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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1624 fasta sequence
[TCACCCGCCCACGGATCCGATCCGCCTCCACTCCCTCCCCCACCGGCGGGCGGCCGCCCGAGCGGCGCGGTGCTCCTCCTCCCTCCTCGTCGTCGTCGTCGGCGCCGGCGATGGTCGTCTGCAAATGCCGCAAGGCGACAAGGGTTTATTGCTTCGTGCACAAGGTTCCTGTCTGCGGCGAATGCATCTGCTTCCCGGAGCATCAGTTATGCGTGGTTAAAAATTATGCTGAATGGGTTGTTAATCCTGATTATGACTGGCCACAACACTGTTCATCTTGCAATTCTGTTCTGGAAGCTGGAAGCGAAGAAACTACACGATTGGGTTGCTTGCATGTGATGCACACAAGATGTTTGATCTCACACATACAAAGTTATTCAACCCAAACTGCACCAGCTGGATATGTTTGTCCTTCATGTTCTACACCTATATGGCCTCCTTCAACTATTAAAGATACTGGCTCGCGCCTTCACTCTAAACTAAAGGAAGCAATAGCCCAGACTGGATTGGAGAAGAACGTATTTGGAAATCATTTTGTGACAATGCCTAAAGCTGATACTCGCACCCCTCCTGCTTTTGCTTCAGATCCTCTTAAACGTGTATCCATTTCTGGTGATAGAGAATCAAATGGTGCAAACATAATCAATTCTGCTATAGATGCAAATGTGCAATCTGGTGGAATGTATTCTTCTGCTACTGTGGGATCTGGGACACCTAGTCACGTTGAACCAGAAATAGTTGAAATAGATGGTCCAAGTCCAATAACAACTCAGTTCCCTGAACAGGAGTCCAACTTCATCAGAAGTCCTAGCCCACATGGGCCGAGTGCCATGACAAGAAAAGGTGCTAACTATGTTGAGAGACAAAATTCAGAGATTTCTTATTATGCTGATGATGAGGACGCAAACCGCAAGAAGTATACCAAAAGGGGTACATTCCGTCACAAATTTCTAAGGATGCTGCTACCTTTCTGGTCCAGTGCATTGCCAACACTGCCAGTTACAGCACCTCCTAGAAAAGAGAGTGATGCTCCAGAGGGCCGTTCACGACATCAAAAATCATCAAGAATGGATCCTACAAAGATCTTACTTGCATTGGCGATCATGGCATGTATAGCAACAATGGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTTATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTGTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTCTTTGTTATTTACACCTGATGAGAAATCATAGAAATTGCCACCATTTGTTTATTTCCCTCAGGATATTATGAAAATATGGCTGCTTTTTTATGGGGCCTTCAAAACTGTTAAAGATGTTAATTTAATGGTGATTACCCCTTTCCCATAATGGAGTCAAATAGGTTTATCATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK073215 [TCACCCGCCCACGGATCCGATCCGCCTCCACTCCCTCCCCCACCGGCGGGCGGCCGCCCGAGCGGCGCGGTGCTCCTCCTCCCTCCTCGTCGTCGTCGTCGGCGCCGGCGATGGTCGTCTGCAAATGCCGCAAGGCGACAAGGGTTTATTGCTTCGTGCACAAGGTTCCTGTCTGCGGCGAATGCATCTGCTTCCCGGAGCATCAGTTATGCGTGGTTAAAAATTATGCTGAATGGGTTGTTAATCCTGATTATGACTGGCCACAACACTGTTCATCTTGCAATTCTGTTCTGGAAGCTGGAAGCGAAGAAACTACACGATTGGGTTGCTTGCATGTGATGCACACAAGATGTTTGATCTCACACATACAAAGTTATTCAACCCAAACTGCACCAGCTGGATATGTTTGTCCTTCATGTTCTACACCTATATGGCCTCCTTCAACTATTAAAGATACTGGCTCGCGCCTTCACTCTAAACTAAAGGAAGCAATAGCCCAGACTGGATTGGAGAAGAACGTATTTGGAAATCATTTTGTGACAATGCCTAAAGCTGATACTCGCACCCCTCCTGCTTTTGCTTCAGATCCTCTTAAACGTGTATCCATTTCTGGTGATAGAGAATCAAATGGTGCAAACATAATCAATTCTGCTATAGATGCAAATGTGCAATCTGGTGGAATGTATTCTTCTGCTACTGTGGGATCTGGGACACCTAGTCACGTTGAACCAGAAATAGTTGAAATAGATGGTCCAAGTCCAATAACAACTCAGTTCCCTGAACAGGAGTCCAACTTCATCAGAAGTCCTAGCCCACATGGGCCGAGTGCCATGACAAGAAAAGGTGCTAACTATGTTGAGAGACAAAATTCAGAGATTTCTTATTATGCTGATGATGAGGACGCAAACCGCAAGAAGTATACCAAAAGGGGTACATTCCGTCACAAATTTCTAAGGATGCTGCTACCTTTCTGGTCCAGTGCATTGCCAACACTGCCAGTTACAGCACCTCCTAGAAAAGAGGGTGATGCTCCAGAGGGCCGTTCACGACATCAAAAATCATCAAGAATGGATCCTACAAAGATCTTACTTGCATTGGCGATCATGGCATGTATAGCAACAATGGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTTATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTGTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTCTTTGTTATTTACACCTGATGAGAAATCATAGAAATTGCCACCAT ]
[+] EMBL AK099084 [TCACCCGCCCACGGATCCGATCCGCCTCCACTCCCTCCCCCACCGGCGGGCGGCCGCCCGAGCGGCGCGGTGCTCCTCCTCCCTCCTCGTCGTCGTCGTCGGCGCCGGCGATGGTCGTCTGCAAATGCCGCAAGGCGACAAGGGTTTATTGCTTCGTGCACAAGGTTCCTGTCTGCGGCGAATGCATCTGCTTCCCGGAGCATCAGTTATGCGTGGTTAAAAATTATGCTGAATGGGTTGTTAATCCTGATTATGACTGGCCACAACACTGTTCATCTTGCAATTCTGTTCTGGAAGCTGGAAGCGAAGAAACTACACGATTGGGTTGCTTGCATGTGATGCACACAAGATGTTTGATCTCACACATACAAAGTTATTCAACCCAAACTGCACCAGCTGGATATGTTTGTCCTTCATGTTCTACACCTATATGGCCTCCTTCAACTATTAAAGATACTGGCTCGCGCCTTCACTCTAAACTAAAGGAAGCAATAGCCCAGACTGGATTGGAGAAGAACGTATTTGGAAATCATTTTGTGACAATGCCTAAAGCTGATACTCGCACCCCTCCTGCTTTTGCTTCAGATCCTCTTAAACGTGTATCCATTTCTGGTGATAGAGAATCAAATGGTGCAAACATAATCAATTCTGCTATAGATGCAAATGTGCAATCTGGTGGAATGTATTCTTCTGCTACTGTGGGATCTGGGACACCTAGTCACGTTGAACCAGAAATAGTTGAAATAGATGGTCCAAGTCCAATAACAACTCAGTTCCCTGAACAGGAGTCCAACTTCATCAGAAGTCCTAGCCCACATGGGCCGAGTGCCATGACAAGAAAAGGTGCTAACTATGTTGAGAGACAAAATTCAGAGATTTCTTATTATGCTGATGATGAGGACGCAAACCGCAAGAAGTATACCAAAAGGGGTACATTCCGTCACAAATTTCTAAGGATGCTGCTACCTTTCTGGTCCAGTGCATTGCCAACACTGCCAGTTACAGCACCTCCTAGAAAAGAGAGTGATGCTCCAGAGGGCCGTTCACGACATCAAAAATCATCAAGAATGGGTCCTACAAAGATCTTACTTGCATTGGCGATCATGGCATGTATAGCAACAATGGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTTATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTGTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTCTTTGTTATTTACACCTGAT ]
[+] EMBL AK106542 [ CACCCGCCCACGGATCCGATCCGCCTCCACTCCCTCCCCCACCGGCGGGCGGCCGCCCGAGCGGCGCGGTGCTCCTCCTCCCTCCTCGTCGTCGTCGTCGGCGCCGGCGATGGTCGTCTGCAAATGCCGCAAGGCGACAAGGGTTTATTGCTTCGTGCACAAGGTTCCTGTCTGCGGCGAATGCATCTGCTTCCCGGAGCATCAGTTATGCGTGGTTAAAAATTATGCTGAATGGGTTGTTAATCCTGATTATGACTGGCCACAACACTGTTCATCTTGCAATTCTGTTCTGGAAGCTGGAAGCGAAGAAACTACACGATTGGGTTGCTTGCATGTGATGCACACAAGATGTTTGATCTCACACATACAAAGTTATTCAACCCAAACTGCACCAGCTGGATATGTTTGTCCTTCATGTTCTACACCTATATGGCCTCCTTCAACTATTAAAGATACTGGCTCGCGCCTTCACTCTAAACTAAAGGAAGCAATAGCCCAGACTGGATTGGAGAAGAACGTATTTGGAAATCATTTTGTGACAATGCCTAAAGCTGATACTCGCACCCCTCCTGCTTTTGCTTCAGATCCTCTTAAACGTGTATCCATTTCTGGTGATAGAGAATCAAATGGTGCAAACATAATCAATTCTGCTATAGATGCAAATGTGCAATCTGGTGGAATGTATTCTTCTGCTACTGTGGGATCTGGGACACCTAGTCACGTTGAACCAGAAATAGTTGAAATAGATGGTCCAAGTCCAATAACAACTCAGTTCCCTGAACAGGAGTCCAACTTCATCAGAAGTCCTAGCCCACATGGGCCGAGTGCCATGACAAGAAAAGGTGCTAACTATGTTGAGAGACAAAATTCAGAGATTTCTTATTATGCTGATGATGAGGACGCAAACCGCAAGAAGTATACCAAAAGGGGTACATTCCGTCACAAATTTCTAAGGATGCTGCTACCTTTCTGGTCCAGTGCATTGCCAACACTGCCAGTTACAGCACCTCCTAGAAAAGAGAGTGATGCTCCAGAGGGCCGTTCACGACATCAAAAATCATCAAGAATGGATCCTACAAAGATCTTACTTGCATTGGCGATCATGGCATGTATAGCAACAATGGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGT TATGCTGCTGATTCCAAGGGTTTTATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTGTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTCTTTGTTATTTACACCTGATGAGAAATCATAGAAATTGCCACCATTTGTT ]
[+] EMBL CB000234 [ TGCTATAGATGCAAATGTGCAATCTGGTGGACTGTTTTCTTCTGCTACTGTGGGATCTGGGACACCTAGTCACGTTGAACCAGAAATAGTTGAAATAGATGGTCCAAGTCCAATAACAACTCAGTTCCCTGAACAGGAGTCCAACTTCATCAGAAGTCCTAGCCCACATGGGCTGAGTGCCATGACAAGAAAAGGTGCTAACTATGTTGAGAGACAAAATTCAGAGATTTCTTATTATGCTGATGATGAGGACGCAAACCGCAAGAAGTATACCAAAAGGGGTACATTCCGTCACAAATTTCTAAGGATGCTGCTACCTTTCTGGTCCAGTGCATTGCCAACACTGCCAGTTACAGCACCTCCTAGAAAAGAGAGTGATGCTCCAGAGGGCCGTTCACGACATCAAAAATCATCAAGAATGGATCCTACAAAGATCTTACTTGCATTGGCGATCATGGCATGTATAGCAACAATGGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTAATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTGTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTCTTTGTTATTTACACCTGA ]
[-] EMBL CF303705 [ TTTAAACCCCCCTTGTATTTCTTTTCTTCCCCCTTTTTGTGGGGCTTTTTTGGTGGCTGAAATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGGGCATGTTTATGTAACTATAATGCTATAAAATATCCTTTTTGTTATTTACCCCTGATGAGAAATCATAGAAATTGCCCCCATTTGTTTATTTCCCTCAGGATATTATGAAAATATGGCTGCTTTTTTATGGGGCCTTCAAAACTGTTAAAGATGTTAATTTAATGGTGATTACCCCTTTCCCATAATGGAGTCAAATAGGTTTATCATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[AAAAATCATCAAGAATGGATCCTACAAAGATCTTACTTGCATTGTTGCTATACATGCCATGATTGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTAATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTCTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTC]
[+] EMBL CB631550 [AAAAATCATCAAGAATGGATCCTACAAAGATCTTACTTGCATTGTTGCTATACATGCCATGATTGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTAATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTCTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8942#0 TCACCCGCCCACGGATCCGATCCGCCTCCACTCCCTCCCCCACCGGCGGGCGGCCGCCCG 60
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 AGCGGCGCGGTGCTCCTCCTCCCTCCTCGTCGTCGTCGTCGGCGCCGGCGATGGTCGTCT 120
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 GCAAATGCCGCAAGGCGACAAGGGTTTATTGCTTCGTGCACAAGGTTCCTGTCTGCGGCG 180
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 AATGCATCTGCTTCCCGGAGCATCAGTTATGCGTGGTTAAAAATTATGCTGAATGGGTTG 240
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 TTAATCCTGATTATGACTGGCCACAACACTGTTCATCTTGCAATTCTGTTCTGGAAGCTG 300
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 GAAGCGAAGAAACTACACGATTGGGTTGCTTGCATGTGATGCACACAAGATGTTTGATCT 360
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 CACACATACAAAGTTATTCAACCCAAACTGCACCAGCTGGATATGTTTGTCCTTCATGTT 420
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 CTACACCTATATGGCCTCCTTCAACTATTAAAGATACTGGCTCGCGCCTTCACTCTAAAC 480
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 TAAAGGAAGCAATAGCCCAGACTGGATTGGAGAAGAACGTATTTGGAAATCATTTTGTGA 540
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 CAATGCCTAAAGCTGATACTCGCACCCCTCCTGCTTTTGCTTCAGATCCTCTTAAACGTG 600
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 TATCCATTTCTGGTGATAGAGAATCAAATGGTGCAAACATAATCAATTCTGCTATAGATG 660
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 CAAATGTGCAATCTGGTGGAATGTATTCTTCTGCTACTGTGGGATCTGGGACACCTAGTC 720
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 ACGTTGAACCAGAAATAGTTGAAATAGATGGTCCAAGTCCAATAACAACTCAGTTCCCTG 780
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 AACAGGAGTCCAACTTCATCAGAAGTCCTAGCCCACATGGGCCGAGTGCCATGACAAGAA 840
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 AAGGTGCTAACTATGTTGAGAGACAAAATTCAGAGATTTCTTATTATGCTGATGATGAGG 900
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 ACGCAAACCGCAAGAAGTATACCAAAAGGGGTACATTCCGTCACAAATTTCTAAGGATGC 960
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 TGCTACCTTTCTGGTCCAGTGCATTGCCAACACTGCCAGTTACAGCACCTCCTAGAAAAG 1020
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 AGAGTGATGCTCCAGAGGGCCGTTCACGACATCAAAAATCATCAAGAATGGATCCTACAA 1080
consensus_8942#1 ---------------------------------AAAAATCATCAAGAATGGATCCTACAA 27
***************************
consensus_8942#0 AGATCTTACTTGCATTGGCGATCATGGCATGTATAGCAACAATGGGGATACTTTATTACC 1140
consensus_8942#1 AGATCTTACTTGCATTG------TTGCTATACAT-GCCATGATTGGGATACTTTATTACC 80
***************** ** ** ** ** * ** ****************
consensus_8942#0 GTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTG 1200
consensus_8942#1 GTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTG 140
************************************************************
consensus_8942#0 AGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTTATAC 1260
consensus_8942#1 AGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTAATAC 200
******************************************************* ****
consensus_8942#0 CCTCCTTGTATTTCTTTTCTTCTCCCTTTTTGTGGGGCTTTCTTGGTGGCTGAGATGGGT 1320
consensus_8942#1 CCTCCTTGTATTTCTTTTCTTCTCCCTTTTTCTGGGGCTTTCTTGGTGGCTGAGATGGGT 260
******************************* ****************************
consensus_8942#0 AGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGT 1380
consensus_8942#1 AGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGT 320
************************************************************
consensus_8942#0 TTATGTAACTATAATGCTATAAAATATCCTCTTTGTTATTTACACCTGATGAGAAATCAT 1440
consensus_8942#1 TTATGTAACTATAATGCTATAAAATATCCTC----------------------------- 351
*******************************
consensus_8942#0 AGAAATTGCCACCATTTGTTTATTTCCCTCAGGATATTATGAAAATATGGCTGCTTTTTT 1500
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 ATGGGGCCTTCAAAACTGTTAAAGATGTTAATTTAATGGTGATTACCCCTTTCCCATAAT 1560
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 GGAGTCAAATAGGTTTATCATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1620
consensus_8942#1 ------------------------------------------------------------
consensus_8942#0 AAAA 1624
consensus_8942#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||