These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 532 fasta sequence [TTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAAACCCGGGGCCCTTACATTACACAAATTTTTTCCTTGATACCCCCCTAATCCCCCAAACCACCCACTGTTTAATTAATCCATAACCCCCGGGTTTAATTTACCAATTTTTAGCCCCCCCCCAAACCCCCCTTTTTTGGGGTGGGTTTTTTTGGGGGCCAATTAAGGGGGGGGACCCCCCCGGGGGGAAGGTTCGGGTGCTTTTGGAATTTACTTGCCCCACTTGCAATCGGGGCAAGAACCATTGGGGCCCCACTTTCAACCCCCGTTTTCCTTCCCGGGGGGGACCTCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACCCCCTAACTGGGACCTTTTTTTACCCCCTGGGTTTTTTTAACACAATCCCAATTGCCCCACTTTTCCCACATGGGCCAAAATTTAATTACCCTAGGGGGGGGGGAGTTAATCCCCTGGGGGGGTTATGCCTTTT] [+] EMBL CF316065 [TTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAAACCCGGGGCCCTTACATTACACAAATTTTTTCCTTGATACCCCCCTAATCCCCCAAACCACCCACTGTTTAATTAATCCATAACCCCCGGGTTTAATTTACCAATTTTTAGCCCCCCCCCAAACCCCCCTTTTTTGGGGTGGGTTTTTTTGGGGGCCAATTAAGGGGGGGGACCCCCCCGGGGGGAAGGTTCGGGTGCTTTTGGAATTTACTTGCCCCACTTGCAATCGGGGCAAGAACCATTGGGGCCCCACTTTCAACCCCCGTTTTCCTTCCCGGGGGGGACCTCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACCCCCTAACTGGGACCTTTTTTTACCCCCTGGGTTTTTTTAACACAATCCCAATTGCCCCACTTTTCCCACATGGGCCAAAATTTAATTACCCTAGGGGGGGGGGAGTTAATCCCCTGGGGGGGTTATGCCTTTT] [+] EMBL CF315117 [TTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAAAACCCGGGGCCCTTACATTACACAAATTTTTTCCTTGATACCCCCCTAATCCCCCAAACGACCCACTGTTTAATTAATCGATAACCCCCGGGTTTAATTTCGCATTATTTAGCCCCCCCCCAAACCCCCCTTTTTTGGGG GGGTTTTATTGGGGACCAATTAAGGGAGGGGACCCCCCCGGGGGGAAGGTTCGGTTGCTTTGGGAATTTACTTGCCCCACTTGC ] consensusID : consensus_8944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [CCCCAAATACCCAAATGATTAATTTCACTGAAAAAAACCCGGGGTCCTTACATTACACAAATTTATACCTTGATACCCCCCTAATTGCCAAAACAACCCCCTTTTTAATTAATTAATAACCCCCGGGTTTAATTCAACAATAATTAACCCCCCCCCAAACCCCCCTTTTTTGGGGGGGTTTTTTTGGGGACTAATTAAGGGGGGGGACCCCCCCGGGGGAAAGGTTCGGGTGCTTTCTGAATTCACTTGCCCCACTTTCAATCGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTCCTTCCCGGGGGGAACCTCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACCCCCTAACTGGGACCTTTTTTTACCCCCTGGGTTTTTTCAACACAATCCCAATTGCCCCCCTTTTCCCACCTGGGCGAAAATTTAATTTCCTAAGGGAGGGAAAAATTAATCCCTT] [+] EMBL BI305724 [CCCCAAATACCCAAATGATTAATTTCACTGAAAAAAACCCGGGGTCCTTACATTACACAAATTTATACCTTGATACCCCCCTAATTGCCAAAACAACCCCCTTTTTAATTAATTAATAACCCCCGGGTTTAATTCAACAATAATTAACCCCCCCCCAAACCCCCCTTTTTTGGGGGGGTTTTTTTGGGGACTAATTAAGGGGGGGGACCCCCCCGGGGGAAAGGTTCGGGTGCTTTCTGAATTCACTTGCCCCACTTTCAATCGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTCCTTCCCGGGGGGAACCTCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACCCCCTAACTGGGACCTTTTTTTACCCCCTGGGTTTTTTCAACACAATCCCAATTGCCCCCCTTTTCCCACCTGGGCGAAAATTTAATTTCCTAAGGGAGGGAAAAATTAATCCCTT] consensusID : consensus_8944#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 436 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGAAATTCCATTGGGTATGAAAAACCTTTTTTCTTGGGAAACCCCCCCAATACCCCATTGGTTAATTTCCCTGGAAATAGCCCGGGGCCCTTACATTACACAAATTTTTACCTTGATACCCCCCTAATCCCCCAAACCACCAACTGTTTAATTAATCCATAACCCCCGGGTTTAATTCACCAATTATTAGCCCCCCCCCAAACCCCCCTCTTTTGGGGGGGTTTTATTGGGGACCAATTAAGGGGGGGGACTCCCCCGGGGGGAAGGTTCGGGTGCTTTTTGAATTTACTTGCCCCACTTTCAATTGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTTCTCTCCGGGGGGGAACTCCTTGAAAGGGGTTTT] [+] EMBL CF313340 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGAAATTCCATTGGGTATGAAAAACCTTTTTTCTTGGGAAACCCCCCCAATTCCCCATTGGTTAATTTCCCTGGAAATAGCCCGGGGCCCTTCCATTACACAAATTCATACCTTGATACCCCCCTAATCCCCCAAACCACCCTTTTTTTAATTAAACCATAACCCCCGGGTTTAATTTCCCCATTATTAGCCCCCCCCCAAACCCCCCTCTTTTGGGGGGGTTTTATTGGGGACCAATTAAGGGGGGGGACTCCCCCGGGGGGAAGGTTCGGGTGCTTTTTGAATTTACTTGCCCCACTTTCAATTGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTTCTCTCCGGGGGGGAACTCCTTGAAAGGGGTTTT] [+] EMBL CF316328 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TGAAATTCCATTGGGTTTTAAAAACCTTTTTTCTTGGGAAACCCCCCCAATACCCCATTGGTTAATTTCCCTGGAAATAACCCGGGGCCCTTACATTACCCAAATTTTTTCCTTGATACCCCCCTAATCCCCCAAACCACCAACTGTTTAATTAATCCATAACCCCCGGGTTTAATTCACCAATTTTTACCCCCCCCCCCAACCCCCCTCTTTTGGGGGGGTTTTTTTGGGGACCAATTAAGGGGGGGGACCCCCCCGCGGGGAAGGTTCGGGTGCTTTTGGAATTTACTTGCCCCACTTTCAATCGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTTCTTCCCGGGGGGGAACTCCTTAAAAGGGGT ] [+] EMBL CF316644 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAAATTCCATTGGGTATGAAAAACCTTTTTTCTAGGGAAACCCCCCCAATACCCCATTGGTTAATTTCCCTGGAAATAGCCCGGGGCCCTTACATTACACAAATTTTTACCTTGATACCCCCATAATCCCCCAAACGACCAACTGTTTAATTAATCGATAACCCCCGGGTTTAATTCACCAATAATTAGCCCCCCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8944#0 ------------------------------------------------------------ consensus_8944#1 ------------------------------------------------------------ consensus_8944#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGAAA 60 consensus_8944#0 TTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_8944#1 --------------------------------------CCCCAAATACCCAAATGATTAA 22 consensus_8944#2 TTCCATTGGGTATGAAAAACCTTTTTTCTTGGGAAACCCCCCCAATACCCCATTGGTTAA 120 * * ** consensus_8944#0 TTTTTTTGAAAAAAACCCGGGGCCCTTACATTACACAAATTTTTTCCTTGATACCCCCCT 120 consensus_8944#1 TTTCACTGAAAAAAACCCGGGGTCCTTACATTACACAAATTTATACCTTGATACCCCCCT 82 consensus_8944#2 TTTCCCTGGAAATAGCCCGGGGCCCTTACATTACACAAATTTTTACCTTGATACCCCCCT 180 *** ** *** * ******* ******************* * *************** consensus_8944#0 AATCCCCCAAACCACCCACTGTTTAATTAATCCATAACCCCCGGGTTTAATTTACCAATT 180 consensus_8944#1 AATTGCCAAAACAACCCCCTTTTTAATTAATTAATAACCCCCGGGTTTAATTCAACAATA 142 consensus_8944#2 AATCCCCCAAACCACCAACTGTTTAATTAATCCATAACCCCCGGGTTTAATTCACCAATT 240 *** ** **** *** ** ********** ******************* * **** consensus_8944#0 TTTAGCCCCCCCCCAAACCCCCCTTTTTTGGGGTGGGTTTTTTTGGGGGCCAATTAAGGG 240 consensus_8944#1 ATTAACCCCCCCCCAAACCCCCCTTTTTTGGGG-GGGTTTTTTTGGGGACTAATTAAGGG 201 consensus_8944#2 ATTAGCCCCCCCCCAAACCCCCCTCTTTTGGGG-GGGTTTTATTGGGGACCAATTAAGGG 299 *** ******************* ******** ******* ****** * ********* consensus_8944#0 GGGGGACCCCCCCGGGGGGAAGGTTCGGGTGCTTTTGGAATTTACTTGCCCCACTTGCAA 300 consensus_8944#1 GGGGGACCCCCCCGGGGGAAAGGTTCGGGTGCTTTCTGAATTCACTTGCCCCACTTTCAA 261 consensus_8944#2 GGGGGACTCCCCCGGGGGGAAGGTTCGGGTGCTTTTTGAATTTACTTGCCCCACTTTCAA 359 ******* ********** **************** ***** ************* *** consensus_8944#0 TCGGGGCAAGAACCATTGGGGCCCCACTTTCAACCCCCGTTTTCCTTCCCGGGGGGGACC 360 consensus_8944#1 TCGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTCCTTCCCGGGGGGAACC 321 consensus_8944#2 TTGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTTCTCTCCGGGGGGGAAC 419 * *********** * *************************** ** ******** * * consensus_8944#0 TCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACCCCCTAACTGGGACCTTTTTTT 420 consensus_8944#1 TCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACCCCCTAACTGGGACCTTTTTTT 381 consensus_8944#2 TCCTTGAAAGGGGTTTT------------------------------------------- 436 ***** *********** consensus_8944#0 ACCCCCTGGGTTTTTTTAACACAATCCCAATTGCCCCACTTTTCCCACATGGGCCAAAAT 480 consensus_8944#1 ACCCCCTGGGTTTTTTCAACACAATCCCAATTGCCCCCCTTTTCCCACCTGGGCGAAAAT 441 consensus_8944#2 ------------------------------------------------------------ consensus_8944#0 TTAATTACCCTAGGGGGGGGGGAGTTAATCCCCTGGGGGGGTTATGCCTTTT 532 consensus_8944#1 TTAATTTCCTAAGGGAGGGAAAAATTAATCCCTT------------------ 475 consensus_8944#2 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||