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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 887 fasta sequence
[AAAAACTCCAGAACCAACCAAAAGGCGCGCGAACACACGAGTCGGCGGCGGCGCGGCGATGGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAAGCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAGCATCGGAGGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAAAGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAATAC-TTTGTGAGGAAGCTAATATTCCT-TACATATA-TGTGCCATCAAAAGAGGATCTT-GCTACTGCCG-GGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACATCTTTCTATATGTATTATGTGAACATGAAGGTTGCTCTACTAGTTTACCCCTGTCGGATCATGCTGTTTCTCTGTTGATTAGCATAAGCTAGTCAATTGTAATGAAACCTGGTGAGCTGATCATTTACTCTCCAGTAAGAAGT-CCCTGTCCC-AGGCCCAGATATGC-ATACCTGGGCACCCCAGATCAGAAAACTCACCAAAGTCATGAGGTATTGTGTGTTAAGTTGCTCGTGGTTATGTTCATATCCTGTATCCATTTTTCCAATTGGTCGATCCTGAAAAATGCGGCAAAAGATTCTTGTTAAAAAA]
[+] EMBL AK063054 [AAAAACTCCAGAACCAACCAAAAGGCGCGCGAACACACGAGTCGGCGGCGGCGCGGCGATGGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAAGCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAGCATCGGAGGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAAAGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAATAC TTTGTGAGGAAGCTAATATTCCT TACATATA TGTGCCATCAAAAGAGGATCTT GCTACTGCCG GGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACATCTTTCTATATGTATTATGTGAACATGAAGGTTGCTCTACTAGTTTACCCCTGTCGGATCATGCTGTTTCTCTGTTGATTAGCATAAGCTAGTCAATTGTAATGAAACCTGGTGAGCTGATCATTTACT ]
[+] EMBL D43343 [ CGCGGCGATGGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCG CCATCGCGAAG CTCTCGCCGNCAAGAAGCTCTNCAAGCGAACCCTCAAGCTCGTCCGGCGAGCATCGGAGGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCNTCGTGGGAACAAAGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAATACTTTTGTNAGGAAGCTAATATTCCT TACATATATTNTGCCATNAAAAGNGGNTCTTNGCTACTGNCGTGGACTACTAATAGGn ]
[+] EMBL BP184724 [ CGATGGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAAGCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAGCATCGGAGGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAAAGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAATAC TTTGTGAGGAAGCTAATATTCCT TACATATA TGTGCCATCAAAAGAGGATCTT GCTACTGCCG GGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACATCTTTCTATATGTATTATGTGAACATGAAGGTTGCTCTACTAGTTTACCCCTGTCGGATCATGCTGTTTCTCTGTTGATTAGCATAAGCTAGTCAATTGTAATGAAACCTGGTGAG ]
[+] EMBL BM037743 [ TCCTATCGATGTGATTACACATGTTCCAATAC TTTGTGAGGAAACTAATATTCCTGTACATATA TGTGCCATCAAAAGAGGATCTT GCTACTGCCG GGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACATCTTTCTATATGTATTATGTGAACATGAAGGTTGCTCTACTAGTTTACCCCTGTCGGATCATGCTGTTTCTCTGTTGATTAGCATAAGCTAGTCAATTGTAATGAAACCTGGTGAGCTGATCATTTACTCTCCAGTAAGAAGTCCCCTGTCCC AGGCCCAGATATGC ATACCTGGGCACCCCAGATCAGAAAACTCACCA ]
[-] EMBL CF315218 [ AAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACATCTTTCTATATGTATTATGTGAACATGAAGGTTGCTCTACTAGTTTACCCCTGTCGGATCATGCTGTTTCTCTGTTGATTAGCATAAGCTAGTCAATTGTAATGAAACCTGGTGAGCTGATCATTTACTCTCCAGTAAGAAGT CCCTGTCCCAAGGCCCAGATATGCAATACCTGGGCACCCCAGATCAGAAAACTCACCAAAGTCATGAGGTATTGTGTGTTAAGTTGCTCGTGGTTATGTTCATATCCTGTATCCATTTTTCCAATTGGTCGATCCTGAAAAATGCGGCAAAAGATTCTTGTTAAAAAA]
consensusID : consensus_8945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[AGTCGGCGGCGGCGCGGCGATGGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAAGCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAGGTTCCTGAGAGACTTTTTTTTTTTAATTTCGGGCCGCCAAATTCCAATCCCTGTTGGTTTCTTTTGCAGTTTAAGGTTTTTTTATCATGCTTTTGGTCGTTCCTATGTTTTCTTTCCCAGCATCGGAGGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAAAGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAATACTTTGTGAGGAAGCTAATATTCCTTACATATATGTGCCATCAAAAGAGGATCTTGCTACTGCCGGGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACAT]
[+] EMBL CF315217 [AGTCGGCGGCGGCGCGGCGATGGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAAGCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAGGTTCCTGAGAGACTTTTTTTTTTTAATTTCGGGCCGCCAAATTCCAATCCCTGTTGGTTTCTTTTGCAGTTTAAGGTTTTTTTATCATGCTTTTGGTCGTTCCTATGTTTTCTTTCCCAGCATCGGAGGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAAAGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAATACTTTGTGAGGAAGCTAATATTCCTTACATATATGTGCCATCAAAAGAGGATCTTGCTACTGCCGGGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8945#0 AAAAACTCCAGAACCAACCAAAAGGCGCGCGAACACACGAGTCGGCGGCGGCGCGGCGAT 60
consensus_8945#1 ---------------------------------------AGTCGGCGGCGGCGCGGCGAT 21
*********************
consensus_8945#0 GGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAA 120
consensus_8945#1 GGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAA 81
************************************************************
consensus_8945#0 GCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAG------- 173
consensus_8945#1 GCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAGGTTCCTG 141
*****************************************************
consensus_8945#0 ------------------------------------------------------------
consensus_8945#1 AGAGACTTTTTTTTTTTAATTTCGGGCCGCCAAATTCCAATCCCTGTTGGTTTCTTTTGC 201
consensus_8945#0 -----------------------------------------------------CATCGGA 180
consensus_8945#1 AGTTTAAGGTTTTTTTATCATGCTTTTGGTCGTTCCTATGTTTTCTTTCCCAGCATCGGA 261
*******
consensus_8945#0 GGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAA 240
consensus_8945#1 GGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAA 321
************************************************************
consensus_8945#0 AGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAAT 300
consensus_8945#1 AGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAAT 381
************************************************************
consensus_8945#0 ACTTTGTGAGGAAGCTAATATTCCTTACATATATGTGCCATCAAAAGAGGATCTTGCTAC 360
consensus_8945#1 ACTTTGTGAGGAAGCTAATATTCCTTACATATATGTGCCATCAAAAGAGGATCTTGCTAC 441
************************************************************
consensus_8945#0 TGCCGGGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGG 420
consensus_8945#1 TGCCGGGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGG 501
************************************************************
consensus_8945#0 GGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGA 480
consensus_8945#1 GGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGA 561
************************************************************
consensus_8945#0 AGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTA 540
consensus_8945#1 AGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTA 621
************************************************************
consensus_8945#0 AATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACATCTTTCTATATGTATTATGTGA 600
consensus_8945#1 AATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACAT--------------------- 660
***************************************
consensus_8945#0 ACATGAAGGTTGCTCTACTAGTTTACCCCTGTCGGATCATGCTGTTTCTCTGTTGATTAG 660
consensus_8945#1 ------------------------------------------------------------
consensus_8945#0 CATAAGCTAGTCAATTGTAATGAAACCTGGTGAGCTGATCATTTACTCTCCAGTAAGAAG 720
consensus_8945#1 ------------------------------------------------------------
consensus_8945#0 TCCCTGTCCCAGGCCCAGATATGCATACCTGGGCACCCCAGATCAGAAAACTCACCAAAG 780
consensus_8945#1 ------------------------------------------------------------
consensus_8945#0 TCATGAGGTATTGTGTGTTAAGTTGCTCGTGGTTATGTTCATATCCTGTATCCATTTTTC 840
consensus_8945#1 ------------------------------------------------------------
consensus_8945#0 CAATTGGTCGATCCTGAAAAATGCGGCAAAAGATTCTTGTTAAAAAA 887
consensus_8945#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||