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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1279 fasta sequence
[CCCCCGGCGACCACGTGCTGCCGGTGTTCACCGGCGAGTGCGGCGACTGCCGGCACTGCCTGTCGGAGGAGAGCAACCTGTGCGACCTCCTCCGCATCAACACCGACCGTGGCGCCATGATCGGCGACGGCCAGACCAGGTTCACCGCCAGGGG-AGGGCAGCCGGTGTACCACTTCCTCGGCACCTCCACGTTCAGCGAGTACACCGTCGTCCATGTCGGCTGCGTCGCCAAGATCCACCCAGCGGCGCCGCTCGACAAGGTCTGCGTCCTCAGCTGTGGCATCTCCACCGGATTTGGCGCGACTGTGAACGTCGCCAAGCCACCGAAGGGGTGCACAGTAGCCATATTCGGCCTGGGTGCAGTTGGTCTTGCTGCCATGGAAGGTGCAAGGATCTCTGGTGCTTCACGGATTATTGGCGTCGATTTGAACCCGGCCAAATTCGAACT-AGCTAAGAAGTTTGGGTGCACAGACTTTGTGAACCCAAAAGATTACGACAAGCCCGTTCAGCAGGTGATCATCGAGATGACCAACGGCGGCGTGGACCGCAGCGTGGAGTGCACCGGCAACGCCGCCGCCATGATCTCCGCCTTCGAGTGCGTCCACGACGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCGGGCAAGGACGCGGCGTTCAAGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACTACAAGCCTCGCACCGACCTGACCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGCTGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCCAGATCGATGTCGCCGCCGGCGATCGACGGCGGCGGCGACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATGCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACATGGGTGGACACAAATTATATATACTGTGAATTTTCTGAAAATTTACAAGACAAATATGAAATTGCGCAAATTACGATAGCGGATAGCCTTTGGCTCGATCAATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATCTGCTCTCTCTAATGTAATGTGCAATCTATATATAACTAAATTATGAAACATAATGTGCAATCTGTCAATCTACATTCTGGTAT]
[+] EMBL AK101288 [CCCCCGGCGACCACGTGCTGCCGGTGTTCACCGGCGAGTGCGGCGACTGCCGGCACTGCCTGTCGGAGGAGAGCAACCTGTGCGACCTCCTCCGCATCAACACCGACCGTGGCGCCATGATCGGCGACGGCCAGACCAGGTTCACCGCCAGGGG AGGGCAGCCGGTGTACCACTTCCTCGGCACCTCCACGTTCAGCGAGTACACCGTCGTCCATGTCGGCTGCGTCGCCAAGATCCACCCAGCGGCGCCGCTCGACAAGGTCTGCGTCCTCAGCTGTGGCATCTCCACCGGATTTGGCGCGACTGTGAACGTCGCCAAGCCACCGAAGGGGTGCACAGTAGCCATATTCGGCCTGGGTGCAGTTGGTCTTGCTGCCATGGAAGGTGCAAGGATCTCTGGTGCTTCACGGATTATTGGCGTCGATTTGAACCCGGCCAAATTCGAACT AGCTAAGAAGTTTGGGTGCACAGACTTTGTGAACCCAAAAGATTACGACAAGCCCGTTCAGCAGGTGATCATCGAGATGACCAACGGCGGCGTGGACCGCAGCGTGGAGTGCACCGGCAACGCCGCCGCCATGATCTCCGCCTTCGAGTGCGTCCACGACGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCGGGCAAGGACGCGGCGTTCAAGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACTACAAGCCTCGCACCGACCTGACCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGCTGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCCAGATCGATGTCGCCGCCGGCGATCGACGGCGGCGGCGACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATGCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACATGGGTGGACACAAATTATATATACTGTGAATTTTCTGAAAATTTACAAGACAAATATGAAATTGCGCAAATTACGATAGCGGATAGCCTTTGGCTCGATCAATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATCTGCTCTCTCTAATGTAATGTGCAATCTATATATAACTAAATTATGAAACATAATGTGCAATCTGTCAATCTACATTCTGGTAT]
[+] EMBL AU030274 [ ACCGCCAGGGGAAGGGCAGCCGGTGTACCACTTCCTCGGCACCTCCACGTTCAGCGAGTACACCGTCGTCCATGTCGGCTGCGTCGCCAAGATCCACCCAGCGGCGCCGCTCGACAAGGTCTGCGTCCTCAGCTGTGGCATCTCCACCGGATTTGGCGCGACTGTGAACGTCGCCAAGCCACCGAA GGGTGCACAGTAGCCATATTCGGCCTGGGTGCAGTTGGTCTTGCTGCCATGGAAGGTGCAAGGATCTCTGGTGCTTCACGGATTATTGGCGTCGATTTGAACCCGGCCAAATTCGAACTAAGCTAAGAAGTTTGGGTGCACAGACTTTGTGAACCCAAAAGATTACGACAAGCCCGTTCAGCAGGTGATCATCGAGATGA CAACGGCGGCGTTGACCG AACGTTGAGTTCACCGGCAngc ]
[+] EMBL AU101480 [ GGACGCTCAGGGGCACGTTCTTCGGCAACTACAAGCCTCGCACCGACCTGCCCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGCTGGAGAAGTTCATCAC CACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCCAGATCGATGTCGCCGCCGGCGATCGACGGCGGCGGCGACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATGCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACATGGGTGGACACAAATTATATATACTGTGAATTTTCTGAAAATTTACAAGACAAATATGAAATTGCGCAAATTACGATAGCGGATAGCCTTTGGCTCGATCAATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATCTGCTCTCTCTAATGTAATGTGCAATCTATATATAACTAAATTATGAAAaaa ]
consensusID : consensus_8947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 769 fasta sequence
[CGACGTACGCACGCCGTCTCATCCACTCATCCATCATATATATTTTCAGTGATCAGCTGTGTCAATGATCTGAACCCTCTGCACGACGATGTCGCCGTCGACGACGACGACGACGATGCAGGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCCGGCAAGGACGCGGCGTTCAAGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACTACAAGCCTCGCACCGACCTGCCCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGCTGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCC-AGATCGATGTCGCCGCCGGCGATCGACGGCG-GCGGCG-ACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATACCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACAGGGGTGGACACAAATTATAGTACTGTGAATTTTCTGAAAATTTACAAGACAAATAAGAAATTGCGCAAATTACAATAGCGGATTAGCCTTACGCTCGATCGATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATTTGCTCTCTCTAATGTAATGTGCAATCTATATATAATTACATTATGAAACAAAAAAAAGA]
[-] EMBL CB618158 [CGACGTACGCACGCCGTCTCATCCACTCATCCATCATATATATTTTCAGTGATCAGCTGTGTCAATGATCTGAACCCTCTGCACGACGATGTCGCCGTCGACGACGACGACGACGATGCAGGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCCGGCAAGGACGCGGCGTTCAAGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACTACAAGCCTCGCACCGACCTGCCCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGCTGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCC AGATCGATGTCGCCGCCGGCGATCGACGGCG GCGGCG ACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATACCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACAGGGGTGGACACAAATTATAGTACTGTGAATTTTCTGAAAATTTACAAGACAAATAAGAAATTGCGCAAATTACAATAGCGGATTAGCCTTACGCTCGATCGATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATTTGCTCTCTCTAATGTAATGTGCAATCTATATATAATTACATTATGAAACAAAAAAAAGA]
[-] EMBL CB618174 [ TCCATCATATATATTTTCAGTGATCAGCTGTGTCAATGATCTGAACCCTCTGCACGACGATGTCGCCGTCGACGACGACGACGACGATGCAGGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCCGGCAAGGACGCGGCGTTCAAGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACTACAAGCCTCGCACCGACCTGCCCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGCTGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCC AGATCGATGTCGCCGCCGGCGATCGACGGCG GCGGCG ACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATACCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACAGGGGTGGACACAAATTATAGTACTGTGAATTTTCTGAAAATTTACAAGACAAATAAGAAATTGCGCAAATTACAATAGCGGATTAGCCTTACGCTCGATCGATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATTTGCTCTCTCTAATGTAATGTGCAATCTATATATAATTACATTATGAAA ]
[+] EMBL BI810408 [ CAACACGGCGTTCGACCTGATGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCCAAGATCGATGTCGCCGCCGGCGATCGAC GCGTGCGGCGTACTGTATAAACGGAGAAAATAAGAGGCTAAAACTACCTATACCTACAGC ATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTGTTCATGGAGAACAGGGGTGGACACCAATTATAGTACTGTGAATTTTCTGAAAATTTACAAGAC AATATGAAATTGCGCAAATTACAATAGCGGATTAGCCTTAGGCTCGATCGATTTGAGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCC CCTTTCTGTATTGCGCATTTGCTCTCTCTAATGTAATGT CAATCTATATATAATTACATTATGAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8947#0 CCCCCGGCGACCACGTGCTGCCGGTGTTCACCGGCGAGTGCGGCGACTGCCGGCACTGCC 60
consensus_8947#1 ------------------------------------------------------------
consensus_8947#0 TGTCGGAGGAGAGCAACCTGTGCGACCTCCTCCGCATCAACACCGACCGTGGCGCCATGA 120
consensus_8947#1 ------------------------------------------------------------
consensus_8947#0 TCGGCGACGGCCAGACCAGGTTCACCGCCAGGGGAGGGCAGCCGGTGTACCACTTCCTCG 180
consensus_8947#1 ------------------------------------------------------------
consensus_8947#0 GCACCTCCACGTTCAGCGAGTACACCGTCGTCCATGTCGGCTGCGTCGCCAAGATCCACC 240
consensus_8947#1 ------------------------------------------------------------
consensus_8947#0 CAGCGGCGCCGCTCGACAAGGTCTGCGTCCTCAGCTGTGGCATCTCCACCGGATTTGGCG 300
consensus_8947#1 ------------------------------------------------------------
consensus_8947#0 CGACTGTGAACGTCGCCAAGCCACCGAAGGGGTGCACAGTAGCCATATTCGGCCTGGGTG 360
consensus_8947#1 ------------------------------------------------------------
consensus_8947#0 CAGTTGGTCTTGCTGCCATGGAAGGTGCAAGGATCTCTGGTGCTTCACGGATTATTGGCG 420
consensus_8947#1 ------------------------------------------------------------
consensus_8947#0 TCGATTTGAACCCGGCCAAATTCGAACTAGCTAAGAAGTTTGGGTGCACAGACTTTGTGA 480
consensus_8947#1 ------------------------------------------------------CGACGT 6
*
consensus_8947#0 ACCCAAAAGATTACGACAAGCCCGTTCAGCAGGTGATCATCGAGATGACCAACGGCGGCG 540
consensus_8947#1 ACGCACGCCGTCTCATCCA-CTCATCCATCATAT-ATATTTTCAGTGATCAGCTGTGTCA 64
** ** * * * * * * * ** ** * ** * *** ** * * * *
consensus_8947#0 TGGACCGCAGCGTGGAGTGCACCGGCAACGCCGCCGCCATGATCTCCGCCTTCGAGTGCG 600
consensus_8947#1 ATGATCTGAACCCT--CTGCAC-GACGATGTCGCCGTCGACGACGACGACGACGA-TGC- 119
** * * * ***** * * * * ***** * * ** * *** ***
consensus_8947#0 TCCACGACGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCGGGCAAGGACGCGGCGTTCA 660
consensus_8947#1 ------AGGGGTGGGGAGTGGCCGTGCTGGTGGGCGTCGCCGGCAAGGACGCGGCGTTCA 173
* ******************************** *******************
consensus_8947#0 AGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACT 720
consensus_8947#1 AGACGCACCCGACCAACTTCCTCAACGAGAGGACGCTCAGGGGCACGTTCTTCGGCAACT 233
************************************************************
consensus_8947#0 ACAAGCCTCGCACCGACCTGACCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGC 780
consensus_8947#1 ACAAGCCTCGCACCGACCTGCCCGGCGTCGTCGAGATGTACATGAACAAGGAGCTGGAGC 293
******************** ***************************************
consensus_8947#0 TGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGA 840
consensus_8947#1 TGGAGAAGTTCATCACGCACAGCGTGCCCTTCTCCGAGATCAACACGGCGTTCGACCTGA 353
************************************************************
consensus_8947#0 TGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCCAGATCGA 900
consensus_8947#1 TGCTCAGTGGGGAGAGCCTCCGCTGCATCATCAGGATGGAGGACTAGCCATCCAGATCGA 413
************************************************************
consensus_8947#0 TGTCGCCGCCGGCGATCGACGGCGGCGGCGACTGTATAAACGGAGAAAATAAGAGGCTAA 960
consensus_8947#1 TGTCGCCGCCGGCGATCGACGGCGGCGGCGACTGTATAAACGGAGAAAATAAGAGGCTAA 473
************************************************************
consensus_8947#0 AACTACCTATGC-TACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTG 1019
consensus_8947#1 AACTACCTATACCTACAGCAATAAGCTAGCCACGGTTGCAGGAATGCGGTTTCAGGTTTG 533
********** * ***********************************************
consensus_8947#0 TTCATGGAGAACATGGGTGGACACAAATTATATATACTGTGAATTTTCTGAAAATTTACA 1079
consensus_8947#1 TTCATGGAGAACAGGGGTGGACACAAATTATA-GTACTGTGAATTTTCTGAAAATTTACA 592
************* ****************** **************************
consensus_8947#0 AGACAAATATGAAATTGCGCAAATTACGATAGCGGAT-AGCCTTTGGCTCGATCAATTTG 1138
consensus_8947#1 AGACAAATAAGAAATTGCGCAAATTACAATAGCGGATTAGCCTTACGCTCGATCGATTTG 652
********* ***************** ********* ****** ******** *****
consensus_8947#0 AGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATCTG 1198
consensus_8947#1 AGCCTATATATGCTGGCTCCACCGCTACACTGTTTGCCGCCTTTCTGTATTGCGCATTTG 712
********************************************************* **
consensus_8947#0 CTCTCTCTAATGTAATGTGCAATCTATATATAACTAAATTATGAAACATAATGTGCAATC 1258
consensus_8947#1 CTCTCTCTAATGTAATGTGCAATCTATATATAATTACATTATGAAACAAAAAAAAGA--- 769
********************************* ** *********** ** *
consensus_8947#0 TGTCAATCTACATTCTGGTAT 1279
consensus_8947#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||