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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence
[TGTTTGTCTTGGGGGCTACAATGCCCTGAGGTTGAGCTTTCTTTTCTTTAATTTGAGCCATTTGTTTCTGCCTCACAGAGCCCCATTCGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCACGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTGGCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTTGACTAATTACTATCAAAAATTTCATAGCATTTTTTTTATGTTCCATTTGTTTGAATTATATGACCAAGTTATAGAAGTGGTTGTACTCTGATAAAAAAAATGCTGGTCTAGTTAAGTGTTTTTAGTGCATACCCAGTAAGCCAGGATTTGTTCACAAACTGGTCTGCAGGTATCCACAGCTCTTCTTCCTGTGATCAACTCAAGTAGAAAAACCCCAAAACTATAGACATCAGTCTTGGTACTTAGCATGCCTGTTCTTACGTATTCTGGAGCACAGTACCCAAATGTGCCCATCACCCTAGTTGAGACATGT]
[+] EMBL CB672139 [TGTTTGTCTTGGGGGCTACAATGCCCTGAGGTTGAGCTTTCTTTTCTTTAATTTGAGCCATTTGTTTCTGCCTCACAGAGCCCCATTCGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCACGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTGGCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTTGACTAATTACTATCAAAAATTTCATAGCATTTTTTTTATGTTCCATTTGTTTGAATTATATGACCAAGTTATAGAAGTGGTTGTACTCTGATAAAAAAAATGCTGGTCTAGTTAAGTGTTTTTAGTGCATACCCAGTAAGCCAGGATTTGTTCACAAACTGGTCTGCAGGTATCCACAGCTCTTCTTCCTGTGATCAACTCAAGTAGAAAAACCCCAAAACTATAGACATCAGTCTTGGTACTTAGCATGCCTGTTCTTACGTATTCTGGAGCACAGTACCCAAATGTGCCCATCACCCTAGTTGAGACATGT]
consensusID : consensus_8954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence
[TGAATCAGTGAACAATTTGAGACAGGTGAGCTGATTTTATATGAAGAATGTTTGCCACTAATCGTTATTGTGTATACCTGGCCATTTTCAAGCTGTCCCTTGTAGACCCTGCCAAAGCCCCCCTCTCCCAGAAGACGGTCAGAACGGAAGTTATTGGTGGCTGTCGCTAGCTCACGGAACGTGAATTTTTTTCCAGTTCTGGCAGTAACTGGGCTTCCATTGTGTGGTTCAGTATTTGCTGCTGCTTCAGATGATTGCTTGTGGTCTGAGGAGACACATGGCAACTTTTCCGATTCTGCAGTGGCTTGAAGCATGAAAAGCAGCTCATCTTCGTCAATAGCCCCATTCGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCACGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCAGGGTACCTCCTCCGATCATGAAGCATGGGTTTGGCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTGGTAGAAGGGCATCTTATTTGACTAATTACTATCAAAAAAAAGA]
[-] EMBL CB660916 [TGAATCAGTGAACAATTTGAGACAGGTGAGCTGATTTTATATGAAGAATGTTTGCCACTAATCGTTATTGTGTATACCTGGCCATTTTCAAGCTGTCCCTTGTAGACCCTGCCAAAGCCCCCCTCTCCCAGAAGACGGTCAGAACGGAAGTTATTGGTGGCTGTCGCTAGCTCACGGAACGTGAATTTTTTTCCAGTTCTGGCAGTAACTGGGCTTCCATTGTGTGGTTCAGTATTTGCTGCTGCTTCAGATGATTGCTTGTGGTCTGAGGAGACACATGGCAACTTTTCCGATTCTGCAGTGGCTTGAAGCATGAAAAGCAGCTCATCTTCGTCAATAGCCCCATTCGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCACGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCAGGGTACCTCCTCCGATCATGAAGCATGGGTTTGGCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTGGTAGAAGGGCATCTTATTTGACTAATTACTATCAAAAAAAAGA]
consensusID : consensus_8954#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 655 fasta sequence
[TCTGAGAGACCCAAACTTGTTNAAGATGGGACCGTACTAGTGAGATAAGAAGAATGATAATTGCCGCGAGCTCTTCAAAGAGGAGTGAAACTATTATTT-TGG-AAGCCACGGTATCTGATATGTATAACTTGGGGAGAGCCCCATT-CGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCC-ATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCATGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTG-GCCTGTTGACCACAAAC-AATTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTTGACTAATTACTATC-AAAATTTCATAGCATTTTTTTTA------AAAAAAAAATGTTTGAATTATATGACCAAGTTATAGAAGTGGTTGTACTCTGATAAAAAATGCTGGTCTACTTNAGTGTTTTTAGTGCATACCCAGTAAAAAA]
[+] EMBL BM038194 [TCTGAGAGACCCAAACTTGTTNAAGATGGGACCGTACTAGTGAGATAAGAAGAATGATAATTGCCGCGAGCTCTTCAAAGAGGAGTGAAACTATTATTT TGG AAGCCA GGTATCTGATATGTATAACTTGGGGAGAGCCCCATT CGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCC ATGCAACAAC ATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCAT GCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTG GCCTGTTGACCACAGAC AATTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTTGACTAATTACTATC AAAATTTCCCCCCANTTTTTTTACTGTTCAAAAAAAAA ]
[+] EMBL BI811676 [ AGATAAGAAGAATGATAATTGCCGCGAGCTCTTCAAAGAGGAGTGAAACTATTATTTGTGG AAGCCACGGTATCTGATATGTATAACTTGGGGAGAGCCCCATT CGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCC ATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCATGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTG GCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTTGACTAATTACTATCAAAAATTTCATAGCATTTTTTTTA AAAAAAAAA ]
[+] EMBL BM422021 [ AGAGGAGTGAAACTATTATTT TGGAAAGCCCAGGTATCTGATATGTATAACTTGGGGAGAGCCCCATTGCGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCATGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTGCNCCTGTTGACCACACAC AATTCCATGATCAGAAACTTTGTAGAAGGGCATCTTATTNGACTAATTACTATC AAAATTTCATAGCATTTTTTTTA TGTTCCATTTGTTTGAATTATATGACCAAGTTATAGAAGTGGTTGTACTCTGATAAAAAATGCTGGTCTACTTNAGTGTTTTTAGTGCATACCCAGTAAAAAA]
[+] EMBL BI813746 [ CGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCC ATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCATGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTG GCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTTGTAGAAGGCCAaaaaaaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8954#0 ------------------------------------------------------------
consensus_8954#2 ------------------------------------------------------------
consensus_8954#1 TGAATCAGTGAACAATTTGAGACAGGTGAGCTGATTTTATATGAAGAATGTTTGCCACTA 60
consensus_8954#0 ------------------------------------------------------------
consensus_8954#2 ------------------------------------------------------------
consensus_8954#1 ATCGTTATTGTGTATACCTGGCCATTTTCAAGCTGTCCCTTGTAGACCCTGCCAAAGCCC 120
consensus_8954#0 ------------------------------------------------------------
consensus_8954#2 ------------------------------------------------------------
consensus_8954#1 CCCTCTCCCAGAAGACGGTCAGAACGGAAGTTATTGGTGGCTGTCGCTAGCTCACGGAAC 180
consensus_8954#0 ------------------------------------------------------------
consensus_8954#2 --------------TCTGAGAGACCCAAACTTGTTNAAGATGGGACCGTACTAGTGAGAT 46
consensus_8954#1 GTGAATTTTTTTCCAGTTCTGGCAGTAACTGGGCTTCCATTGTGTGGTTCAGTATTTGCT 240
consensus_8954#0 -----------TGTTTGTCTTGGGGGCTACAATGCCCTGAGGTTGAGCTTTCTTTTCTTT 49
consensus_8954#2 AAGAAGAATGATAATTGCCGCGAGCTCTTCAAAG----AGGAGTGAAACTATTATTTTGG 102
consensus_8954#1 GCTGCTTCAGATGATTG-CTTGTGGTCTGAGGAGACACATGGCAACTTTTCCGATTCTGC 299
* *** * * * ** * * * ** *
consensus_8954#0 AAT---TTGAGCCATTTGT--T---TCTGCCTCAC--AGAGCCCCATTCGATGGCCTCAG 99
consensus_8954#2 AAG---CCACGGTATCTGA--TATGTATAACTTGGGGAGAGCCCCATTCGATGGCCTCAG 157
consensus_8954#1 AGTGGCTTGAAGCATGAAAAGCAGCTCATCTTCGTCAATAGCCCCATTCGATGGCCTCAG 359
* ** * * * *********************
consensus_8954#0 CAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAG 159
consensus_8954#2 CAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAG 217
consensus_8954#1 CAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAG 419
************************************************************
consensus_8954#0 GATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTA 219
consensus_8954#2 GATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTA 277
consensus_8954#1 GATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTA 479
************************************************************
consensus_8954#0 CTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTT 279
consensus_8954#2 CTTCTGCGAGGAATCCCA-TGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTT 336
consensus_8954#1 CTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTT 539
****************** *****************************************
consensus_8954#0 CATCTTCTATGCATATCGCTGCCACGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGT 339
consensus_8954#2 CATCTTCTATGCATATCGCTGCCATGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGT 396
consensus_8954#1 CATCTTCTATGCATATCGCTGCCACGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGT 599
************************ ***********************************
consensus_8954#0 CACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTT 399
consensus_8954#2 CACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTT 456
consensus_8954#1 CACCTCTAAGAAGAGGGTCTACCAGCTCAGGGTACCTCCTCCGATCATGAAGCATGGGTT 659
***************************** ******************************
consensus_8954#0 TGGCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTT 459
consensus_8954#2 TGGCCTGTTGACCACAAACAA-TTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTT 515
consensus_8954#1 TGGCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTGGTAGAAGGGCATCTTATTT 719
********************* ****************** *******************
consensus_8954#0 GACTAATTACTATCAAAAATTTCATAGCATTTTTTTTATGTTCCATTTGTTTGAATTATA 519
consensus_8954#2 GACTAATTACTATCAAAA-TTTCATAGCATTTTTTTTAAAAAAAAAATGTTTGAATTATA 574
consensus_8954#1 GACTAATTACTATCAAAAAAAAGA------------------------------------ 743
****************** *
consensus_8954#0 TGACCAAGTTATAGAAGTGGTTGTACTCTGATAAAAAAAATGCTGGTCTAGTTAAGTGTT 579
consensus_8954#2 TGACCAAGTTATAGAAGTGGTTGTACTCTGATAAAAAA--TGCTGGTCTACTTNAGTGTT 632
consensus_8954#1 ------------------------------------------------------------
consensus_8954#0 TTTAGTGCATACCCAGTAAGCCAGGATTTGTTCACAAACTGGTCTGCAGGTATCCACAGC 639
consensus_8954#2 TTTAGTGCATACCCAGTAAAAAA------------------------------------- 655
consensus_8954#1 ------------------------------------------------------------
consensus_8954#0 TCTTCTTCCTGTGATCAACTCAAGTAGAAAAACCCCAAAACTATAGACATCAGTCTTGGT 699
consensus_8954#2 ------------------------------------------------------------
consensus_8954#1 ------------------------------------------------------------
consensus_8954#0 ACTTAGCATGCCTGTTCTTACGTATTCTGGAGCACAGTACCCAAATGTGCCCATCACCCT 759
consensus_8954#2 ------------------------------------------------------------
consensus_8954#1 ------------------------------------------------------------
consensus_8954#0 AGTTGAGACATGT 772
consensus_8954#2 -------------
consensus_8954#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||