|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8958#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1880 fasta sequence
[TCTTTTTATTGATCATCAAAAATTTGTCCACTATGTCTCTTCCCGAAATTCTGTACTAGATGGTACATACACTCTCTATGTTTAGCATATGAAAAAACCACACTCACCCCATACATCACTGCTTGCCCACAATCAGTGCTGAATGTAAGCCCAACTGGGTTGCCTATAGCTTCTTTCAACCTATTCATAAACCACTCCCAATTCTCATTTGTTTCTGAGTCAATGACACCAATAGCTACTGGGTACATCCAATTGTGACCATCAACTGCACAAGCTACACACAACCGGCCCCTGAACCTTCCATTTAAAAATGTACTATCTACTGCAAGATATGGCCTACAACCTCATAGGAAACCATCAACACAAGCTTTCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGGTGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAGATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTATTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTCCACCTACAGCCCACATTCTTGCCACTGCAATACACCAGAAGAGGCACTTAATCCTCACACCGAAAAGAAAGCAGCAGCAGCAGAAAAGACGATCCTAGCAGGGCTTCAGCTCCACTCCACAGGCAAAACTCAACTGGGGTCTGAGCCTTGGTCTTCTAACTTCGCCTCCAGCTCAGAAGCACTACACTTCTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACTTCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAGACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTCGCCTCGACCAGTGCGCGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCGATGTTGGGGACAGCCACGGCGCGGCCCGGAGTGGTTGGGAACAGTGGCAAGCGGCGGCCGGAGGTGGCAAAACAGTGGCGGCCTCGATCTTGATGGTGGGAATGGTGCTGCGGGGGTGGAAGGGGAGAACGGAGTGGATGCCGGGGCGCGGCACGACGCGGCGGAGCTTTTGGCGGCGGCGGCGCAGCGCGGCAGCGACGGGAGCGGCGGGAAACGGCGGCGAGCGGCGGAGCGCGGGCTCGCGCGGGGAGTACGGGAGAGGGTGTGAGGGACTCGGGGAGGAGGGGGAAACGGAAGAGGATTGCCCGGGGAAGGTTTATATAGCTCCGGGAGGAGGAAATCGTGGCCGGGCGGGGAGGATTTGAAGGAGGAATGGGCACCAGTGACGTGGGCGAGGTGGAGCTCGAATAGGCGCGAAAATTTGGGGAAAAATGGGGGACGGGGTGGAGGAGTGGGCGGCGACCACGTCCGCACGGTCGGACGTGCGCGCGGGAGGCTGGAGGCGGCGGTTTTAGCGGCGTAGTGGGCGGCAATGGCGGTTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCATTGTTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAGAATTCC]
[+] EMBL CB666025 [TCTTTTTATTGATCATCAAAAATTTGTCCACTATGTCTCTTCCCGAAATTCTGTACTAGATGGTACATACACTCTCTATGTTTAGCATATGAAAAAACCACACTCACCCCATACATCACTGCTTGCCCACAATCAGTGCTGAATGTAAGCCCAACTGGGTTGCCTATAGCTTCTTTCAACCTATTCATAAACCACTCCCAATTCTCATTTGTTTCTGAGTCAATGACACCAATAGCTACTGGGTACATCCAATTGTGACCATCAACTGCACAAGCTACACACAACCGGCCCCTGAACCTTCCATTTAAAAATGTACTATCTACTGCAAGATATGGCCTACAACCTCATAGGAAACCATCAACACAAGCTTTCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGGTGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAGATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTATTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGA ]
[+] EMBL CB666027 [ ATCATCAAAAATTTGTCCACTATGTCTCTTCTCGAAATTCTGTACTAGATGGTACATACACTCTCTATGTTTAGCATATGAAAAAACCACACTCACCCCATACATCACTGCTTGCCCACAATCAGTGCTGAATGTAAGCCCAACTGGGTTGCCTATAGCTTCTTTCAACCTATTCATAAACCACTCCCAATTCTCATTTGTTTCTGAGTCAATGACACCAATAGCTACTGGGTACATCCAATTGTGACCATCAACTGCACAAGCTACACACAACCGGCCCCTGAACCTTCCATTTAAAAATGTACTATCTACTGCAAGATATGGCCTACAACCTCATAGGAAACCATCAACACAAGCTTTCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGGTGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAGATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTATTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTCCACCTACAGCCCACATTCTTGCCACTGCAATACACCAGAAGAG ]
[-] EMBL CB666026 [ CAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAGATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTATTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTCCACCTACAGCCCACATTCTTGCCACTGCAATACACCAGAAGAGGCACTTAATCCTCACACCGAAAAGAAAGCAGCAGCAGCAGAAAAGACGATCCTAGCAGGGCTTCAGCTCCACTCCACAGGCAAAACTCAACTGGGGTCTGAGCCTTGGTCTTCTAACTTCGCCTCCAGCTCAGAAGCACTACACTTCTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACTTCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAGACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTCGCCTCGACCAGTGCGCGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCGATGTT ]
[-] EMBL CB666024 [ TAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAGATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTATTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTCCACCTACAGCCCACATTCTTGCCACTGCAATACACCAGAAGAGGCACTTAATCCTCACACCGAAAAGAAAGCAGCAGCAGCAGAAAAGACGATCCTAGCAGGGCTTCAGCTCCACTCCACAGGCAAAACTCAACTGGGGTCTGAGCCTTGGTCTTCTAACTTCGCCTCCAGCTCAGAAGCACTACACTTCTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACTTCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAGACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTGGCCTCGACCAGTGCGCGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGTTTAGGGGATGTT ]
[-] EMBL CB648272 [ CGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCGATGTTGGGGACAGCCACGGCGCGGCCCGGAGTGGTTGGGAACAGTGGCAAGCGGCGGCCGGAGGTGGCAAAACAGTGGCGGCCTCGATCTTGATGGTGGGAATGGTGCTGCGGGGGTGGAAGGGGAGAACGGAGTGGATGCCGGGGCGCGGCACGACGCGGCGGAGCTTTTGGCGGCGGCGGCGCAGCGCGGCAGCGACGGGAGCGGCGGGAAACGGCGGCGAGCGGCGGAGCGCGGGCTCGCGCGGGGAGTACGGGAGAGGGTGTGAGGGACTCGGGGAGGAGGGGGAAACGGAAGAGGATTGCCCGGGGAAGGTTTATATAGCTCCGGGAGGAGGAAATCGTGGCCGGGCGGGGAGGATTTGAAGGAGGAATGGGCACCAGTGACGTGGGCGAGGTGGAGCTCGAATAGGCGCGAAAATTTGGGGAAAAATGGGGGACGGGGTGGAGGAGTGGGCGGCGACCACGTCCGCACGGTCGGACGTGCGCGCGGGAGGCTGGAGGCGGCGGTTTTAGCGGCGTAGTGGGCGGCAATGGCGGTTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCATTGTTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAGAATTCC]
consensusID : consensus_8958#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence
[TCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGGTGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAAATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTCTTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTCCACCTACAGCCCACATTCTTGCCACTGCAATACACCCTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACTTCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAGACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTCGCCTCGACCAGTGCGCGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCGATGTTGGGGACAGCCACGGCGCGGCCCGGAGTGGTTGGGAACAGTGGCAAGC]
[+] EMBL CB648273 [TCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGGTGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAAATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTCTTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTCCACCTACAGCCCACATTCTTGCCACTGCAATACACCCTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACTTCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAGACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTCGCCTCGACCAGTGCGCGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCGATGTTGGGGACAGCCACGGCGCGGCCCGGAGTGGTTGGGAACAGTGGCAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8958#0 TCTTTTTATTGATCATCAAAAATTTGTCCACTATGTCTCTTCCCGAAATTCTGTACTAGA 60
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 TGGTACATACACTCTCTATGTTTAGCATATGAAAAAACCACACTCACCCCATACATCACT 120
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 GCTTGCCCACAATCAGTGCTGAATGTAAGCCCAACTGGGTTGCCTATAGCTTCTTTCAAC 180
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 CTATTCATAAACCACTCCCAATTCTCATTTGTTTCTGAGTCAATGACACCAATAGCTACT 240
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 GGGTACATCCAATTGTGACCATCAACTGCACAAGCTACACACAACCGGCCCCTGAACCTT 300
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 CCATTTAAAAATGTACTATCTACTGCAAGATATGGCCTACAACCTCATAGGAAACCATCA 360
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 ACACAAGCTTTCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGG 420
consensus_8958#1 ----------TCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGG 50
**************************************************
consensus_8958#0 TGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATAC 480
consensus_8958#1 TGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATAC 110
************************************************************
consensus_8958#0 AGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCT 540
consensus_8958#1 AGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCT 170
************************************************************
consensus_8958#0 AGATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGC 600
consensus_8958#1 AAATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGC 230
* **********************************************************
consensus_8958#0 TATTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAA 660
consensus_8958#1 TCTTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAA 290
* **********************************************************
consensus_8958#0 AACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCG 720
consensus_8958#1 AACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCG 350
************************************************************
consensus_8958#0 TATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTC 780
consensus_8958#1 TATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTC 410
************************************************************
consensus_8958#0 CACCTACAGCCCACATTCTTGCCACTGCAATACACCAGAAGAGGCACTTAATCCTCACAC 840
consensus_8958#1 CACCTACAGCCCACATTCTTGCCACTGCAATACACC------------------------ 446
************************************
consensus_8958#0 CGAAAAGAAAGCAGCAGCAGCAGAAAAGACGATCCTAGCAGGGCTTCAGCTCCACTCCAC 900
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 AGGCAAAACTCAACTGGGGTCTGAGCCTTGGTCTTCTAACTTCGCCTCCAGCTCAGAAGC 960
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 ACTACACTTCTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACT 1020
consensus_8958#1 ---------CTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACT 497
***************************************************
consensus_8958#0 TCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAG 1080
consensus_8958#1 TCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAG 557
************************************************************
consensus_8958#0 ACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTCGCCTCGACCAGTGCG 1140
consensus_8958#1 ACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTCGCCTCGACCAGTGCG 617
************************************************************
consensus_8958#0 CGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCG 1200
consensus_8958#1 CGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCG 677
************************************************************
consensus_8958#0 ATGTTGGGGACAGCCACGGCGCGGCCCGGAGTGGTTGGGAACAGTGGCAAGCGGCGGCCG 1260
consensus_8958#1 ATGTTGGGGACAGCCACGGCGCGGCCCGGAGTGGTTGGGAACAGTGGCAAGC-------- 729
****************************************************
consensus_8958#0 GAGGTGGCAAAACAGTGGCGGCCTCGATCTTGATGGTGGGAATGGTGCTGCGGGGGTGGA 1320
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 AGGGGAGAACGGAGTGGATGCCGGGGCGCGGCACGACGCGGCGGAGCTTTTGGCGGCGGC 1380
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 GGCGCAGCGCGGCAGCGACGGGAGCGGCGGGAAACGGCGGCGAGCGGCGGAGCGCGGGCT 1440
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 CGCGCGGGGAGTACGGGAGAGGGTGTGAGGGACTCGGGGAGGAGGGGGAAACGGAAGAGG 1500
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 ATTGCCCGGGGAAGGTTTATATAGCTCCGGGAGGAGGAAATCGTGGCCGGGCGGGGAGGA 1560
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 TTTGAAGGAGGAATGGGCACCAGTGACGTGGGCGAGGTGGAGCTCGAATAGGCGCGAAAA 1620
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 TTTGGGGAAAAATGGGGGACGGGGTGGAGGAGTGGGCGGCGACCACGTCCGCACGGTCGG 1680
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 ACGTGCGCGCGGGAGGCTGGAGGCGGCGGTTTTAGCGGCGTAGTGGGCGGCAATGGCGGT 1740
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 TGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCATTGTTTCTTCTCCGAG 1800
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 AAAAGAAGTTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTT 1860
consensus_8958#1 ------------------------------------------------------------
consensus_8958#0 CGCCCATTGCGGAGAATTCC 1880
consensus_8958#1 --------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||