Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8970 cluster # 8970       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8970#0 length = 1816 sequences # 3  
consensus_8970#1 length = 910 sequences # 1  
consensus_8970#2 length = 908 sequences # 2  

consensusID : consensus_8970#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1816
fasta sequence
                              [GAATTCCAGGCTGAAGTCGAGATAATTAGTCGTGTGCATCACCGTCATCTGGTATCTCTTGTGGGATATTGCATTTCCAATAACCAAAGGTTACTTGTCTACGACTTTGTGCCTAATAACACCCTTCATTATCATCTTCACGGACACGGGAGGCCTGTTCTAGATTGGTCGGCTAGGGTTAAAATTGCTGCAGGTGCTGCTCGTGGAATAGCGTATCTACATGAAGATTGCCATCCAAGGATAATCCACCGAGACATCAAGTCCTCAAACATTTTGTTGGATAATAACTTTGAGGCACATGTGGCTGATTTTGGTCTTGCGAGGTTGGCTTTGAACGCTGTAACTCATGTAACTACCCGTGTAATGGGGACATTTGGGTACATGGCTCCAGAATATGCATCAAGTGGGAAATTGACTGAGTGATCTGATGTGTTCTCTTTTGGTGTTGTTCTCTTAGAGCTTATCACTGGTAGAAAACCTGTTGATGCATCAAGGCCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGACCATTGCTTACTCAAGCTATTGAGACAGGTAATTTGGAAGAGTTGGTCGA-CCCCAGGCTTGAGAGGAACTTCAATGAAGCTGAAATGTTCCGTATGATTG-AAGCTGCAGCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAGAGGTACTCTACTCATAGCCTCAAGCTCCAGGATCCTGTAGCGTGCAGTAGTTGCTTTCTTTGCTCAGTATTGACTAGTCTATTCTTCTTCACTCACTAAT-CCGGGTTGAATTGGGTATGGAGTGTCCAGTGTAATCCTTACTATGTTAGGGCTAAGCAAAGCGAACTGAATTGATTGTTTGATTGTTATTCGCAGAAGAATAGGGTGGCGAATTGAGTGCTCCCGTAACGTGTAGATCGATCATGTATGTACACATGAACTCATTCTTCTTGTTTGACAAAATTATGGTGTTGGTCAAAGCACAAAAGCACACACGAGATCATTTAAGCTTCTAGATGTTCTCTTTCTCTGAATTTTTGATGTTGACGCCAAGAGGAGGACGACGACGTTAGGGCATCAGCAATGTATCCTTCCCAAGTAGTAAATAAGGTGGGACCAACCAAAAGCAGGTAATTGTTATTCAAGATCTCACAATGTATAGGAGGTAATAAGATAGGTCCCACATGTATATAAAAATCTAAAAGTATACGGTAGTATGGATAGAGAAGAAAGATTCAATACATAGCTGAGAGAATCAATGATTTTTTATTCCTTACTAGCAGGTCATAGCGCTATTGCTTGGTATTTGTTGCTTACTACCTCCACAATGTTTACTACCTGGTATTAAGGCTGTATTTATTGCTTACTACCTAGTTTTTGAGCACATTATGGATGCCCTATGGTCTCATGTGGCGTCTCAACTGAACCACCCACAAGAAACGAAACGTCGTCGTGGTGGTGGCTAACAAGTTACATCATTTTAGAATGGAATAATGCTGCCTGTAAGTGTAACAATTAACGCCGAATGTCTTGCCTGACCAAAAACAAGTGTTCCTGATTTCCAGGCCATCAAATTTGACTATCACACGAGTTCTTTTTAGGTGATCACATCACAAAGAAAGAGCCA]

[+] EMBL CA765135             [GAATTCCAGGCTGAAGTCGAGATAATTAGTCGTGTGCATCACCGTCATCTGGTATCTCTTGTGGGATATTGCATTTCCAATAACCAAAGGTTACTTGTCTACGACTTTGTGCCTAATAACACCCTTCATTATCATCTTCACGGACACGGGAGGCCTGTTCTAGATTGGTCGGCTAGGGTTAAAATTGCTGCAGGTGCTGCTCGTGGAATAGCGTATCTACATGAAGATTGCCATCCAAGGATAATCCACCGAGACATCAAGTCCTCAAACATTTTGTTGGATAATAACTTTGAGGCACATGTGGCTGATTTTGGTCTTGCGAGGTTGGCTTTGAACGCTGTAACTCATGTAACTACCCGTGTAATGGGGACATTTGGGTACATGGCTCCAGAATATGCATCAAGTGGGAAATTGACTGAGTGATCTGATGTGTTCTCTTTTGGTGTTGTTCTCTTAGAGCTTATCACTGGTAGAAAACCTGTTGATGCATCAAGGCCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGACCATTGCTTACTCAAGCTATTGAGACAGGTAATTTGGAAGAGTTGGTCGA CCCCAGGCTTGAGAGGAACTTCAATGAAGCTGAAATGTTCCGTATGATTG AAGCTGCAGCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCANAGGTTANGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK110818             [                                                                                     AAAGGTTACTTGTCTACGACTTTGTGCCTAATAACACCCTTCATTATCATCTTCACGGACAGGGGAGGCCTGTTCTAGATTGGTCGGCTAGGGTTAAAATTGCTGCAGGTGCTGCTCGTGGAATAGCGTATCTACATGAAGATTGCCATCCAAGGATAATCCACCGAGACATCAAGTCCTCAAACATTTTGTTGGATAATAACTTCGAGGCACATGTGGCTGATTTTGGTCTTGCGAGGTTGGCTTTGGACGCTGTAACTCATGTAACTACCCGTGTAATGGGGACATTTGGGTACATGGCTCCAGAGTATGCATCAAGTGGGAAATTGACTGAGAGATCTGATGTGTTCTCTTTTGGTGTTGTTCTCTTAGAGCTTATCACTGGTAGATAACCTGTTGATGCATCAAGGCCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGACCATTGCTTACTCAAGCTATTGAGACAGGTAATTTGGAAGAGTTGGTCGA CCCCAGGCTTGAGAGGAACTTCAATGAAGCTGAAATGTTCCGTATGATTG AAGCTGCAGCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAGAGGTACTCTACTCATAGCCTCAAGCTCCAGGATCCTGTAGCGTGCAGTAGTTGCTTTCTTTGCTCAGTATTGACTAGTCTATTCTTCTTCACTCACTAAT CCGGGTTGAATTGGGTATGGAGTGTCCAGTGTAATCCTTACTATGTTAGGGCTAAGCAAAGCGAACTGAATTGATTGTTTGATTGTTATTCGCAGAAGAATAGGGTGGCGAATTGAGTGCTCCCGTAACGTGTAGATCGATCATGTATGTACACATGAACTCATTCTTCTTGTTTGACAAAATTATGGTGTTGGTCAAAGCACAAAAGCACACACGAGATCATTTAAGCTTCTAGATGTTCTCTTTCTCTGAATTTTTGATGTTGACGCCAAGAGGAGGACGACGACGTTAGGGCATCAGCAATGTATCCTTCCCAAGTAGTAAATAAGGTGGGACCAACCAAAAGCAGGTAATTGTTATTCAAGATCTCACAATGTATAGGAGGTAATAAGATAGGTCCCACATGTATATAAAAATCTAAAAGTATACGGTAGTATGGATAGAGAAGAAAGATTCAATACATAGCTGAGAGAATCAATGATTTTTTATTCCTTACTAGCAGGTCATAGCGCTATTGCTTGGTATTTGTTGCTTACTACCTCCACAATGTTTACTACCTGGTATTAAGGCTGTATTTATTGCTTACTACCTAGTTTTTGAGCACATTATGGATGCCCTATGGTCTCATGTGGCGTCTCAACTGAACCACCCACAAGAAACGAAACGTCGTCGTGGTGGTGGCTAACAAGTTACATCATTTTAGAATGGAATAATGCTGCCTGTAAGTGTAACAATTAACGCCGAATGTCTTGCCTGACCAAAAACAAGTGTTCCTGATTTCCAGGCCATCAAATTTGACTATCACACGAGTTCTTTTTAGGTGATCACATCACAAAGAAAGAGCCA]
[-] EMBL CB966357             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGTAA TTGGAAGAATTGGTCGACCCCCAGGCTTGAGA GAACTTCAATGGAACTGAAATGTTCCGTATGATTGAAATCTTCGGCAGCCTGTGTTCGATACTCCGCATCAAGGAGCCCCAGAATGAGCCAGGTGGTTCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACCAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAGAGGTACTCTACTCATAGCCTCAAGCTCCAGGATCCTGTAGCGTGCAGTAGTTGCTTTCTTTGCTCAGTATTGACTAGTCTATTCTTCTTCACTCACTAATCCCGGGTTGAATT GGTATGGAGTGTCCAGTGTAATCCTTACTATGTTAGGGCTAAGCAAAGCGAACTGAATTGATTGTTTGATTGTTATTCGCAGAAGAATAGGGTGGCGAATTGAGTGCTCCCGTAACGTGTAGATCGATCATGTATGTACACATGAACTCATTCTTCTTGTTTGACAAAATTATGGTGTTGGTCAAAGCACCAAAGCACACACGAGATCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]


>consensus_8970#0 GAATTCCAGGCTGAAGTCGAGATAATTAGTCGTGTGCATCACCGTCATCTGGTATCTCTT GTGGGATATTGCATTTCCAATAACCAAAGGTTACTTGTCTACGACTTTGTGCCTAATAAC ACCCTTCATTATCATCTTCACGGACACGGGAGGCCTGTTCTAGATTGGTCGGCTAGGGTT AAAATTGCTGCAGGTGCTGCTCGTGGAATAGCGTATCTACATGAAGATTGCCATCCAAGG ATAATCCACCGAGACATCAAGTCCTCAAACATTTTGTTGGATAATAACTTTGAGGCACAT GTGGCTGATTTTGGTCTTGCGAGGTTGGCTTTGAACGCTGTAACTCATGTAACTACCCGT GTAATGGGGACATTTGGGTACATGGCTCCAGAATATGCATCAAGTGGGAAATTGACTGAG TGATCTGATGTGTTCTCTTTTGGTGTTGTTCTCTTAGAGCTTATCACTGGTAGAAAACCT GTTGATGCATCAAGGCCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGACCATTGCTT ACTCAAGCTATTGAGACAGGTAATTTGGAAGAGTTGGTCGACCCCAGGCTTGAGAGGAAC TTCAATGAAGCTGAAATGTTCCGTATGATTGAAGCTGCAGCAGCCTGTGTTCGATACTCC GCATCAAGGAGGCCCAGAATGAGCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCGATATT GATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCA GAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGC CAATACGGTTGGAGCAGCAGTCGCCAGTAGAGGTACTCTACTCATAGCCTCAAGCTCCAG GATCCTGTAGCGTGCAGTAGTTGCTTTCTTTGCTCAGTATTGACTAGTCTATTCTTCTTC ACTCACTAATCCGGGTTGAATTGGGTATGGAGTGTCCAGTGTAATCCTTACTATGTTAGG GCTAAGCAAAGCGAACTGAATTGATTGTTTGATTGTTATTCGCAGAAGAATAGGGTGGCG AATTGAGTGCTCCCGTAACGTGTAGATCGATCATGTATGTACACATGAACTCATTCTTCT TGTTTGACAAAATTATGGTGTTGGTCAAAGCACAAAAGCACACACGAGATCATTTAAGCT TCTAGATGTTCTCTTTCTCTGAATTTTTGATGTTGACGCCAAGAGGAGGACGACGACGTT AGGGCATCAGCAATGTATCCTTCCCAAGTAGTAAATAAGGTGGGACCAACCAAAAGCAGG TAATTGTTATTCAAGATCTCACAATGTATAGGAGGTAATAAGATAGGTCCCACATGTATA TAAAAATCTAAAAGTATACGGTAGTATGGATAGAGAAGAAAGATTCAATACATAGCTGAG AGAATCAATGATTTTTTATTCCTTACTAGCAGGTCATAGCGCTATTGCTTGGTATTTGTT GCTTACTACCTCCACAATGTTTACTACCTGGTATTAAGGCTGTATTTATTGCTTACTACC TAGTTTTTGAGCACATTATGGATGCCCTATGGTCTCATGTGGCGTCTCAACTGAACCACC CACAAGAAACGAAACGTCGTCGTGGTGGTGGCTAACAAGTTACATCATTTTAGAATGGAA TAATGCTGCCTGTAAGTGTAACAATTAACGCCGAATGTCTTGCCTGACCAAAAACAAGTG TTCCTGATTTCCAGGCCATCAAATTTGACTATCACACGAGTTCTTTTTAGGTGATCACAT CACAAAGAAAGAGCCA



consensusID : consensus_8970#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 910
fasta sequence
                              [TGGGTTTCGATTCGATTCGAGAGCTCTCTTCCTTCCTTAGTTCCTTGGTTCAGGAGGGTTGGTTGGTTGGTTCACAAGGCAAGGCAGATGAGATGAGGAGGAGGAGGAGAGGAATTGATCGATGATGATGATGGATTCAAGTGCAAGTGCAAGGCGCTGGGTTTGGATCTGAGCTCCCATCGTTACCTCTTGTCTGCCGCCATGGCCAACAAATCGAAATCGGCAGCGGCGTCCCCTTCTTCTTCCTCCTCACCGTCAGTCGCCCTTGGCCTTGCCGCCACCACGCCCACCACCTCCCCACTACCACTAGCACCTGCAGCTGCAGCCTCTTCCTCCAACCCCAATGCCACGCCGGCCGACACCACTCCCACTTCCCCGCCGCCCGCCTCCCCACCTCTACCGTCCGCAACGCCACCGCTTGCTGCCTCGCCACCGCCACCACCACCACCACCGCCACCCAGAAATTCACCATCGCCTCCTAAACCGCCAAGCCAAGCAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAGAGGTACTCTACTCATAGCCTCAAGCTCCAGGATCCTGTAGCGTGCAGTAGTTGCTTTCTTTGCTCAGTATTGACTAGTCTATTCTTCTTCACTCACTAATCCGGGTTGAATTGGGTATGGAGTGTCCAGTGTAATCCTTACTATGTTAGGGCTAAGCAAAGCGAACTGAATTGATTGTTTGATTGTTATTCGCAGAAGAATAGGGTGGCGAATTGAGTGCTCCCGTAACGTGTAGATCGATCATGTATGTACACATGAACTCATTCTTCTTGTTTGACAAAATTATGGTGTTG]

[+] EMBL AK061517             [TGGGTTTCGATTCGATTCGAGAGCTCTCTTCCTTCCTTAGTTCCTTGGTTCAGGAGGGTTGGTTGGTTGGTTCACAAGGCAAGGCAGATGAGATGAGGAGGAGGAGGAGAGGAATTGATCGATGATGATGATGGATTCAAGTGCAAGTGCAAGGCGCTGGGTTTGGATCTGAGCTCCCATCGTTACCTCTTGTCTGCCGCCATGGCCAACAAATCGAAATCGGCAGCGGCGTCCCCTTCTTCTTCCTCCTCACCGTCAGTCGCCCTTGGCCTTGCCGCCACCACGCCCACCACCTCCCCACTACCACTAGCACCTGCAGCTGCAGCCTCTTCCTCCAACCCCAATGCCACGCCGGCCGACACCACTCCCACTTCCCCGCCGCCCGCCTCCCCACCTCTACCGTCCGCAACGCCACCGCTTGCTGCCTCGCCACCGCCACCACCACCACCACCGCCACCCAGAAATTCACCATCGCCTCCTAAACCGCCAAGCCAAGCAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAGAGGTACTCTACTCATAGCCTCAAGCTCCAGGATCCTGTAGCGTGCAGTAGTTGCTTTCTTTGCTCAGTATTGACTAGTCTATTCTTCTTCACTCACTAATCCGGGTTGAATTGGGTATGGAGTGTCCAGTGTAATCCTTACTATGTTAGGGCTAAGCAAAGCGAACTGAATTGATTGTTTGATTGTTATTCGCAGAAGAATAGGGTGGCGAATTGAGTGCTCCCGTAACGTGTAGATCGATCATGTATGTACACATGAACTCATTCTTCTTGTTTGACAAAATTATGGTGTTG]


>consensus_8970#1 TGGGTTTCGATTCGATTCGAGAGCTCTCTTCCTTCCTTAGTTCCTTGGTTCAGGAGGGTT GGTTGGTTGGTTCACAAGGCAAGGCAGATGAGATGAGGAGGAGGAGGAGAGGAATTGATC GATGATGATGATGGATTCAAGTGCAAGTGCAAGGCGCTGGGTTTGGATCTGAGCTCCCAT CGTTACCTCTTGTCTGCCGCCATGGCCAACAAATCGAAATCGGCAGCGGCGTCCCCTTCT TCTTCCTCCTCACCGTCAGTCGCCCTTGGCCTTGCCGCCACCACGCCCACCACCTCCCCA CTACCACTAGCACCTGCAGCTGCAGCCTCTTCCTCCAACCCCAATGCCACGCCGGCCGAC ACCACTCCCACTTCCCCGCCGCCCGCCTCCCCACCTCTACCGTCCGCAACGCCACCGCTT GCTGCCTCGCCACCGCCACCACCACCACCACCGCCACCCAGAAATTCACCATCGCCTCCT AAACCGCCAAGCCAAGCAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGT TCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGA GCAGCAGTCGCCAGTAGAGGTACTCTACTCATAGCCTCAAGCTCCAGGATCCTGTAGCGT GCAGTAGTTGCTTTCTTTGCTCAGTATTGACTAGTCTATTCTTCTTCACTCACTAATCCG GGTTGAATTGGGTATGGAGTGTCCAGTGTAATCCTTACTATGTTAGGGCTAAGCAAAGCG AACTGAATTGATTGTTTGATTGTTATTCGCAGAAGAATAGGGTGGCGAATTGAGTGCTCC CGTAACGTGTAGATCGATCATGTATGTACACATGAACTCATTCTTCTTGTTTGACAAAAT TATGGTGTTG



consensusID : consensus_8970#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 908
fasta sequence
                              [GAGCCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATCGCCTCTGCCCCCGACAACAACCACGACTACGCCTCCGACTGCTCCAGTACCAGCAGCAGCGCCTCCTCCTACTGCTCCCTCCCCTTATTCTGCTCCGTCTCCCACTCCCACTCCCACCCACACCCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAGAGGTACTCTACTCATAGCCTCAAGCTCCAGGATCCTGTAGCGTGCAGTAGTTGCTTTCTTTGCTCAGTATTGACTAGTCTATTCTTCTTCACTCACTAATCCGGGTTGAATTGGGTATGGAGTGTCCAGTGTAATCCTTACTATGTTAGGGCTAAGCAAAGCGAACTGAATTGATTGTTTGATTGTTATTCGCAGAAGAATAGGGTGGCGAATTGAGTGCTCCCGTAACGTGTAGATCGATCATGTATGTACACATGAACTCATTCTTCTTGTTAGAGAGAATTATGGTGTTGGTCAAAG]

[+] EMBL CB646384             [GAGCCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATCGCCTCTGCCCCCGACAACAACCACGACTACGCCTCCGACTGCTCCAGTACCAGCAGCAGCGCCTCCTCCTACTGCTCCCTCCCCTTATTCTGCTCCGTCTCCCACTCCCACTCCCACCCACACCCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAGAGGTACTCTACTCATAGCCTCAAGCTCCAGGATCCTGTAGCGTGCAGTAGTTGCTTTCTTTGCTCAGTATTGACTAGTCTATTCTTCTTCACTCACTAATCCGGGTTGAATTGGGTATGGAGTGTCCAGTGTAATCCTTACTA                                                                                                                                                             ]
[-] EMBL CB646385             [                                                                                                                                                                               GCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATCGCCTCTGCCCCCGACAACAACCACGACTACGCCTCCGACTGCTCCAGTACCAGCAGCAGCGCCTCCTCCTACTGCTCCCTCCCCTTATTCTGCTCCGTCTCCCACTCCCACTCCCACCCACACCCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAGAGGTACTCTACTCATAGCCTCAAGCTCCAGGATCCTGTAGCGTGCAGTAGTTGCTTTCTTTGCTCAGTATTGACTAGTCTATTCTTCTTCACTCACTAATCCGGGTTGAATTGGGTATGGAGTGTCCAGTGTAATCCTTACTATGTTAGGGCTAAGCAAAGCGAACTGAATTGATTGTTTGATTGTTATTCGCAGAAGAATAGGGTGGCGAATTGAGTGCTCCCGTAACGTGTAGATCGATCATGTATGTACACATGAACTCATTCTTCTTGTTAGAGAGAATTATGGTGTTGGTCAAAG]


>consensus_8970#2 GAGCCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAA GCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAG CAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAA AGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTT GTGGGAGAGCAATCGCCTCTGCCCCCGACAACAACCACGACTACGCCTCCGACTGCTCCA GTACCAGCAGCAGCGCCTCCTCCTACTGCTCCCTCCCCTTATTCTGCTCCGTCTCCCACT CCCACTCCCACCCACACCCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGA GCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGC CAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGTTCCAGCGGA TGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGAGCAGCAGTC GCCAGTAGAGGTACTCTACTCATAGCCTCAAGCTCCAGGATCCTGTAGCGTGCAGTAGTT GCTTTCTTTGCTCAGTATTGACTAGTCTATTCTTCTTCACTCACTAATCCGGGTTGAATT GGGTATGGAGTGTCCAGTGTAATCCTTACTATGTTAGGGCTAAGCAAAGCGAACTGAATT GATTGTTTGATTGTTATTCGCAGAAGAATAGGGTGGCGAATTGAGTGCTCCCGTAACGTG TAGATCGATCATGTATGTACACATGAACTCATTCTTCTTGTTAGAGAGAATTATGGTGTT GGTCAAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8970#0      GAATTCCAGGCTGAAGTCGAGATAATTAGTCGTGTGCATCACCGTCATCTGGTATCTCTT 60
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------------------------------------------
                                                                                  

consensus_8970#0      GTGGGATATTGCATTTCCAATAACCAAAGGTTACTTGTCTACGACTTTGTGCCTAATAAC 120
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------------------------------------------
                                                                                  

consensus_8970#0      ACCCTTCATTATCATCTTCACGGACACGGGAGGCCTGTTCTAGATTGGTCGGCTAGGGTT 180
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------------------------------------------
                                                                                  

consensus_8970#0      AAAATTGCTGCAGGTGCTGCTCGTGGAATAGCGTATCTACATGAAGATTGCCATCCAAGG 240
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------TGGGTTTCGATTCGATTCGAGAGCTCTCTTCCTTCC 36
                                                                                  

consensus_8970#0      ATAATCCACCGAGACATCAAGTCCTCAAACATTTTGTTGGATAATAACTTTGAGGCACAT 300
consensus_8970#2      -GAGCCCA--GAGACGAGGAA-----GGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTT 52
consensus_8970#1      TTAGTTCCTTGGTTCAGGAGG------GTTGGTTGGTTGGTTCACAAGGC-AAGGCAGAT 89
                        *   *   *   *                        *   * *       ** *  *

consensus_8970#0      GTGGCTGATTTTGGTCTTGCGAGGTTGGCTTTGAACGCTGTAACTCATGTAACTACCCGT 360
consensus_8970#2      GAAAATAAGCATAGATCCG-GAGATT---CCCAAATAGGTCAACCTTTTGAACTGCCTGC 108
consensus_8970#1      G-AGATGAGGAGGAGGAGGAGAGGAATTGATCGATGATGATGATGGATTCAAGTGCAAGT 148
                      *    * *          * ***          *        *    *  ** * *  * 

consensus_8970#0      GTAATGGGGACATTTGGGTACATGGCTCCAGAATATGCATCAAGTGGGAAATTGACTGAG 420
consensus_8970#2      TGAATCCA------TGAGCA---GGCAAGAGACAACCTGGCGAACTGAAACAT--CTTAG 157
consensus_8970#1      GCAAGGCG-----CTGGGTTTG-GATCTGAGCTCCCATCGTTACCTCTTGTCTGCCGCCA 202
                        **          ** *     *     **           *         *  *    

consensus_8970#0      TGATCTGATGTGTTCTCTTTTGGTGTTGTTCTCTTAGAGCTTATCACTGGTAGAAAACCT 480
consensus_8970#2      TAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCA 217
consensus_8970#1      TGGCCA-ACAAATCGAAATCGGCAGCGGCGTCCCCTTCTTCTTCCTCCTCACCGTCAGTC 261
                      *   *  *                *       *                       *   

consensus_8970#0      GTTGATGCATCAAGGCCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGACCATTGCTT 540
consensus_8970#2      GCC--TAAACCGTGAAAACGGGGTTGTGGGAGAGCAATCGCCTCTGCCC--CCGACAACA 273
consensus_8970#1      GCC-------CTTGGCCTTGCCGCCAC--CACGCCCACCACCTCCCCACTACCACTAGCA 312
                      *         *  *        *       *           *   *    **       

consensus_8970#0      ACTCAAGCTATTGAGACAGGTAATTTGGAAGAGTTGGTCGACCCCAGGCTTGAGAGGAAC 600
consensus_8970#2      ACCACGACTACGCCTCCGACTGCTCCAGTACCAGCAGCAGCGCCTCCTCCTACTGCTCCC 333
consensus_8970#1      CCTGCAGCTGCAGCCTC--TTCCTCCAACCCCAAT-GCCACGCCGGCCGACACCACTCCC 369
                       *     **       *   *  *            *     **               *

consensus_8970#0      TTCAATGAAGCTGAAATGTTCCGTAT----GATTGAAGCTGCAGC-AGCCTGTGTTCGAT 655
consensus_8970#2      TCCCCTTATTCTGCTCCGTCTCCCACTCCCACTCCCACCCACACCCAGCCTGTGTTCGAT 393
consensus_8970#1      ACTTCCC-CGCCGCCCGCCTCCCCAC---CTCTACCGTCCGCAAC--GCCACCGCTTGCT 423
                                * *        *  *       *     *  ** *  ***   * * * *

consensus_8970#0      ACTCCGCATCAAGGAGGCCCAGAATGAGCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCG 715
consensus_8970#2      ACTCCGCATCAAGGAGGCCCAGAATGAGCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCG 453
consensus_8970#1      GCCTCGCCACCGCCACCACCACCACCACC------------GCCACCCAGAAATTCACCA 471
                       *  ***  *    *   ***  *  * *            **     * *  **  ** 

consensus_8970#0      ATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACA 775
consensus_8970#2      ATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACA 513
consensus_8970#1      ----TCGCCTCCTAAAC--CGCCAAGCCAAGC---AGCGAGCTTTTCAATGTGGCGAACA 522
                          *   **   ***   **   ***** *    *************************

consensus_8970#0      CAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACA 835
consensus_8970#2      CAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACA 573
consensus_8970#1      CAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACA 582
                      ************************************************************

consensus_8970#0      TGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAGAGGTACTCTACTCATAGCCTCAAGC 895
consensus_8970#2      TGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAGAGGTACTCTACTCATAGCCTCAAGC 633
consensus_8970#1      TGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAGAGGTACTCTACTCATAGCCTCAAGC 642
                      ************************************************************

consensus_8970#0      TCCAGGATCCTGTAGCGTGCAGTAGTTGCTTTCTTTGCTCAGTATTGACTAGTCTATTCT 955
consensus_8970#2      TCCAGGATCCTGTAGCGTGCAGTAGTTGCTTTCTTTGCTCAGTATTGACTAGTCTATTCT 693
consensus_8970#1      TCCAGGATCCTGTAGCGTGCAGTAGTTGCTTTCTTTGCTCAGTATTGACTAGTCTATTCT 702
                      ************************************************************

consensus_8970#0      TCTTCACTCACTAATCCGGGTTGAATTGGGTATGGAGTGTCCAGTGTAATCCTTACTATG 1015
consensus_8970#2      TCTTCACTCACTAATCCGGGTTGAATTGGGTATGGAGTGTCCAGTGTAATCCTTACTATG 753
consensus_8970#1      TCTTCACTCACTAATCCGGGTTGAATTGGGTATGGAGTGTCCAGTGTAATCCTTACTATG 762
                      ************************************************************

consensus_8970#0      TTAGGGCTAAGCAAAGCGAACTGAATTGATTGTTTGATTGTTATTCGCAGAAGAATAGGG 1075
consensus_8970#2      TTAGGGCTAAGCAAAGCGAACTGAATTGATTGTTTGATTGTTATTCGCAGAAGAATAGGG 813
consensus_8970#1      TTAGGGCTAAGCAAAGCGAACTGAATTGATTGTTTGATTGTTATTCGCAGAAGAATAGGG 822
                      ************************************************************

consensus_8970#0      TGGCGAATTGAGTGCTCCCGTAACGTGTAGATCGATCATGTATGTACACATGAACTCATT 1135
consensus_8970#2      TGGCGAATTGAGTGCTCCCGTAACGTGTAGATCGATCATGTATGTACACATGAACTCATT 873
consensus_8970#1      TGGCGAATTGAGTGCTCCCGTAACGTGTAGATCGATCATGTATGTACACATGAACTCATT 882
                      ************************************************************

consensus_8970#0      CTTCTTGTTTGACAAAATTATGGTGTTGGTCAAAGCACAAAAGCACACACGAGATCATTT 1195
consensus_8970#2      CTTCTTGTTAGAGAGAATTATGGTGTTGGTCAAAG------------------------- 908
consensus_8970#1      CTTCTTGTTTGACAAAATTATGGTGTTG-------------------------------- 910
                      ********* ** * *************                                

consensus_8970#0      AAGCTTCTAGATGTTCTCTTTCTCTGAATTTTTGATGTTGACGCCAAGAGGAGGACGACG 1255
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------------------------------------------
                                                                                  

consensus_8970#0      ACGTTAGGGCATCAGCAATGTATCCTTCCCAAGTAGTAAATAAGGTGGGACCAACCAAAA 1315
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------------------------------------------
                                                                                  

consensus_8970#0      GCAGGTAATTGTTATTCAAGATCTCACAATGTATAGGAGGTAATAAGATAGGTCCCACAT 1375
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------------------------------------------
                                                                                  

consensus_8970#0      GTATATAAAAATCTAAAAGTATACGGTAGTATGGATAGAGAAGAAAGATTCAATACATAG 1435
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------------------------------------------
                                                                                  

consensus_8970#0      CTGAGAGAATCAATGATTTTTTATTCCTTACTAGCAGGTCATAGCGCTATTGCTTGGTAT 1495
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------------------------------------------
                                                                                  

consensus_8970#0      TTGTTGCTTACTACCTCCACAATGTTTACTACCTGGTATTAAGGCTGTATTTATTGCTTA 1555
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------------------------------------------
                                                                                  

consensus_8970#0      CTACCTAGTTTTTGAGCACATTATGGATGCCCTATGGTCTCATGTGGCGTCTCAACTGAA 1615
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------------------------------------------
                                                                                  

consensus_8970#0      CCACCCACAAGAAACGAAACGTCGTCGTGGTGGTGGCTAACAAGTTACATCATTTTAGAA 1675
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------------------------------------------
                                                                                  

consensus_8970#0      TGGAATAATGCTGCCTGTAAGTGTAACAATTAACGCCGAATGTCTTGCCTGACCAAAAAC 1735
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------------------------------------------
                                                                                  

consensus_8970#0      AAGTGTTCCTGATTTCCAGGCCATCAAATTTGACTATCACACGAGTTCTTTTTAGGTGAT 1795
consensus_8970#2      ------------------------------------------------------------
consensus_8970#1      ------------------------------------------------------------
                                                                                  

consensus_8970#0      CACATCACAAAGAAAGAGCCA 1816
consensus_8970#2      ---------------------
consensus_8970#1      ---------------------
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)