cluster # 8974

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Oryza sativa
cluster # 8974 cluster # 8974 Sequences # 6 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8974#0 length = 316 sequences # 6

consensusID : consensus_8974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 316
fasta sequence

                              [ATCAGAATCAAACGAGCTTTTACCCTNTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCNTAGGACACCTGCGTTATCTTTNAACAGATGTNCCGCCNCAGCCAAACTCNNCACCTGACAATGTCTTNCGCCCGGNTCGGCCCGAGGGACTCGGGCGTTTAGAGCCAAAAGGAGGGGCCAGGCCCCGNTTCCGACTNACGGAATAAGTAAAATAACGNTAAAAGTAGT-GGTATTTCACTTGCGCCCGAGGGCTCNCACTTATCNTACACCTNTNAAGTCATTTCACAAAGTCGGACTAGAGTCAAGNTCA]

[+] EMBL AU163181             [ATCAGAATCAAACGAGCTTTTACCCTNTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCNTAGGACACCTGCGTTATCTTTNAACAGATGTNCCGCCNCAGCCAAACTCNNCACCTGACAATGTCTTNCGCCCGGNTCGGCCCGAGGGACTCGGGCG TTAGAGCCAAAAGGAGGGGNCAGGCCCCGTTTCCGACTNACGGAATAAGTAAAATAACGNTAAAAGTAGTNGGTATTT                                                                           ]
[-] EMBL AU161537             [                             GTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCNTAGGACACNTGCGTTATCTTTTAACAGATGTNCCGCNNCAGCCAAACTCNNCACCTGACAATGTCTTNCGCCCGGTTCGGCCCGAGGGACTCGGGCGTTTAGAGCCAAAAGGAGGGGCCAGGCCCCGNTTCCGACTNACGGAATAAGTAAAATAACGNTAAAAGTAGT GGTA                                                                              ]
[+] EMBL AU197484             [                              TTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCNTAGGACACCTGCGTTATCTTTTAACAGATGTNCCGCNNCAGCCAAACTCNNCACCTGACAATGTCTTNCGCCCGGNTCGGCCCGAGGGACTCGGGCGTTTAGAGCCAAAAGGAGGGGCCAGGCCCCGNTTCCGACTNACGGAATAAGNAAAATAACGTTAAAAGTAG                                                                                    ]
[+] EMBL AU161525             [                               TCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTNAACAGATGTNCCGCCNCAGCCAAACTCNNCACCTGACAATGTCTTNCGCCCGGNTCGGCCCGAGGGACTCGGGCGTTTAGAGCCAAAAGGAGGGGCCAGGCCCCGNTTCCGACTCACGGAATAAGTAAAATAACGTTAAAAGTAGT GGTATTTCACTTGCGCCCGAGGGCTCNCACTTATNNTACACCTNTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGNTCA]
[+] EMBL AU163179             [                                                                                                          GCCAAACTCNCCACCTGACAATGTCTTNCGCCCGGTTCGGCCCGAGGGACTCGGGCNTNTAGAGCCAAAAGGAGGGGCCAGGCCCCGNTTCCGACTCACGGAATAAGTAAAATAACGTTAAAAGTAGT GGTATTTCACTTGCGCCCGAGGGCTCNCACTTATCNTACACCTNTNAAGTCATTTCACAAAGTCGGACTAGAGTCAAGNTCA]
[+] EMBL AU163177             [                                                                                                                            CAATGTCTTNCGCCCGGNTCGGCCCGAGGGACTCGGGCNTTTAGAGCCAAAAGGAGGGGCCAGGCCCCNNTTCCGACTCACGGAATAAGTAAAATAACGNTAAAAGTAGT GGTATTTCACTTGCGCCCGAGGGCTCNCACTTATCNNACACCNNTNAAGTCATTTCACAAAGTCGGACTAGAGTCAAGN   ]




>consensus_8974#0
ATCAGAATCAAACGAGCTTTTACCCTNTTGTTCCACACGAGATTTCTGTTCTCGTTGAGC
TCATCNTAGGACACCTGCGTTATCTTTNAACAGATGTNCCGCCNCAGCCAAACTCNNCAC
CTGACAATGTCTTNCGCCCGGNTCGGCCCGAGGGACTCGGGCGTTTAGAGCCAAAAGGAG
GGGCCAGGCCCCGNTTCCGACTNACGGAATAAGTAAAATAACGNTAAAAGTAGTGGTATT
TCACTTGCGCCCGAGGGCTCNCACTTATCNTACACCTNTNAAGTCATTTCACAAAGTCGG
ACTAGAGTCAAGNTCA

clustalw multiple alignements is not computed in this case