cluster # 8977

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Oryza sativa
cluster # 8977 cluster # 8977 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8977#0 length = 818 sequences # 1

consensus_8977#1 length = 646 sequences # 5

consensusID : consensus_8977#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 818
fasta sequence

                              [GGACGAGACAAGGGGCAAGGGCTCAAGTCCACCGCCGGCCTCCCCGTCAGCCGCCGCTCCACCAACTCGGGCTTCGGCAACGTCAGCAATGGCGGAAGGATCAAGTGCATGCAGGTGTGGCCAATTGAGGGCATCAAGAAGTTCGAGACCCTATCGTACCTGCCACCACTCACCGTGGAGGATCTTTTGAAGCAGATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGTCTCGAGTTCAGCAAGGNTGGGTTCGTCTACCGTGAGAACCACAGGTCTCCCGGATACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGNTTTGGGCTATATTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGACCGGNTTTATTGTAAGAGTACTACAATTATCGGTGGGTGAGGATATGTGAAAACAAAGCTNCGGCTATATACACACAAGATATGTNTCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAATGGGTGGNAT]

[+] EMBL CB096380             [GGACGAGACAAGGGGCAAGGGCTCAAGTCCACCGCCGGCCTCCCCGTCAGCCGCCGCTCCACCAACTCGGGCTTCGGCAACGTCAGCAATGGCGGAAGGATCAAGTGCATGCAGGTGTGGCCAATTGAGGGCATCAAGAAGTTCGAGACCCTATCGTACCTGCCACCACTCACCGTGGAGGATCTTTTGAAGCAGATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGTCTCGAGTTCAGCAAGGNTGGGTTCGTCTACCGTGAGAACCACAGGTCTCCCGGATACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGNTTTGGGCTATATTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGACCGGNTTTATTGTAAGAGTACTACAATTATCGGTGGGTGAGGATATGTGAAAACAAAGCTNCGGCTATATACACACAAGATATGTNTCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAATGGGTGGNAT]




>consensus_8977#0
GGACGAGACAAGGGGCAAGGGCTCAAGTCCACCGCCGGCCTCCCCGTCAGCCGCCGCTCC
ACCAACTCGGGCTTCGGCAACGTCAGCAATGGCGGAAGGATCAAGTGCATGCAGGTGTGG
CCAATTGAGGGCATCAAGAAGTTCGAGACCCTATCGTACCTGCCACCACTCACCGTGGAG
GATCTTTTGAAGCAGATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGTCTCGAGTTC
AGCAAGGNTGGGTTCGTCTACCGTGAGAACCACAGGTCTCCCGGATACTACGATGGCAGG
TATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAG
GAGCTCGAGGAGGCCAAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTCGAC
AACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAG
TCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATA
GTATGCAGCTTTGNTTTGGGCTATATTGATGATATATCAATATATAATATGCTATATATT
TTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAA
TAATCTCTTCCCTCCCTCTCCGACCGGNTTTATTGTAAGAGTACTACAATTATCGGTGGG
TGAGGATATGTGAAAACAAAGCTNCGGCTATATACACACAAGATATGTNTCTAGAGCATA
TCTGATAAATTCGTCGACAATAAAAAAATGGGTGGNAT

consensusID : consensus_8977#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 646
fasta sequence

                              [ATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGATTCGTCTACCGTGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCCTACCCCGAATG-CCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACA--AAAAAAAAAAAAAAAAAACACTGTCATGCCGTTA-CGTAGC]

[-] EMBL CF305525             [ATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGATTCGTCTACCGTGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCCTACCCCGAATG CCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCG  A  AAAAAAAAAAAAAAAAAACACTGTCGTGCCGTTA CGTAG ]
[-] EMBL CF295334             [ATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGATTCGTCTACCGTGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGG CCTACCCCG ATGCCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTAAAAGGCCTCTGCTCTTAACAAAAAAATAATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGAAAAACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTAATAAATTCGTCGACAATAAAAAAAAAAAAAAAAAACACTGTCATGCCGGTA C     ]
[-] EMBL CF300799             [                                                                                                                                                                                                                      TCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGCATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGAC   AAAAAAAAAAATAATAAACACTGTCATGCCGTTAGCGTAtc]
[-] EMBL CF293450             [                                                                                                                                                                                                                                           GGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGAC    AAAAAAAAAAAAAAAAACACTGTCATGCCGTTA GGTAGC]
[-] EMBL CF302932             [                                                                                                                                                                                                                                                    AGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAAAAAAAAAAAAACACTGTCATGCCGT         ]




>consensus_8977#1
ATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGATTC
GTCTACCGTGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTGGACCATGTGG
AAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCC
AAGAAGGCCCTACCCCGAATGCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGG
TGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACT
AAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTG
TTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGT
TTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCT
CCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGA
AAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCG
TCGACAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTACGTAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8977#0      GGACGAGACAAGGGGCAAGGGCTCAAGTCCACCGCCGGCCTCCCCGTCAGCCGCCGCTCC 60
consensus_8977#1      ------------------------------------------------------------
                                                                                  

consensus_8977#0      ACCAACTCGGGCTTCGGCAACGTCAGCAATGGCGGAAGGATCAAGTGCATGCAGGTGTGG 120
consensus_8977#1      ------------------------------------------------------------
                                                                                  

consensus_8977#0      CCAATTGAGGGCATCAAGAAGTTCGAGACCCTATCGTACCTGCCACCACTCACCGTGGAG 180
consensus_8977#1      ------------------------------------------------------------
                                                                                  

consensus_8977#0      GATCTTTTGAAGCAGATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGTCTCGAGTTC 240
consensus_8977#1      ---------------ATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGCCTCGAGTTC 45
                                     *********************************** *********

consensus_8977#0      AGCAAGGNTGGGTTCGTCTACCGTGAGAACCACAGGTCTCCCGGATACTACGATGGCAGG 300
consensus_8977#1      AGCAAGGTTGGATTCGTCTACCGTGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGG 105
                      ******* *** ******************************** ***************

consensus_8977#0      TATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAG 360
consensus_8977#1      TATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAG 165
                      ************************************************************

consensus_8977#0      GAGCTCGAGGAGGCCAAGAAGGCC-TACCCCGA-TGCCTTTGTCCGTATCATCGGCTTCG 418
consensus_8977#1      GAGCTCGAGGAGGCCAAGAAGGCCCTACCCCGAATGCCTTTGTCCGTATCATCGGCTTCG 225
                      ************************ ******** **************************

consensus_8977#0      ACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGG 478
consensus_8977#1      ACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGG 285
                      ************************************************************

consensus_8977#0      AGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAA 538
consensus_8977#1      AGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAA 345
                      ************************************************************

consensus_8977#0      TAGTATGCAGCTTTGNTTTGGGCTATATTGATGATATATCAATATATAATATGCTATATA 598
consensus_8977#1      TAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATA 405
                      *************** ********** *********************************

consensus_8977#0      TTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGT 658
consensus_8977#1      TTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGT 465
                      ************************************************************

consensus_8977#0      AATAATCTCTTCCCTCCCTCTCCGACCGGNTTTATTGTAAGAGTACTACAATTATCGGTG 718
consensus_8977#1      AATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTG 525
                      ************************ **** *************************** **

consensus_8977#0      GGTGAGGATATGTGAAAACAAAGCTNCGGCTATATACACACAAGATATGTNTCTAGAGCA 778
consensus_8977#1      GGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCA 585
                      ************************* ************************ *********

consensus_8977#0      TATCTGATAAATTCGTCGACAATAAAAAAATGGGTGGNAT-------------------- 818
consensus_8977#1      TATCTGATAAATTCGTCGACAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTACGTAG 645
                      ********************** *******        *                     

consensus_8977#0      -
consensus_8977#1      C 646