These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8978#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1081 fasta sequence [TTTCCTTTGATAATTGTAGTACTCTTACAATAAAACCGGCCGGACAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCCTCTCCGGCCGGTTTAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAG-CTTAG-TTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACT-GCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGATCGAAGCAGGTACTCGATCTGCTTCAAAAGATCCTCCAGGTGAGTGGTGGCAGGTACGATAGGGTCTCGAACTTCTTGATGCCCTCAATGTGGCACACCTGCATGCACTTGATCCTTCCGCCATNGCTGACGTATGCCGAAGCCCGAGTGGTGGAAGCGGAGGATGACGGGGANGCCGGGGAGGACTTGAGCCTTGGAATGGAGCACGGGAGGGGGCGAAGAGGCAACAGGGGGGGGCAAACAAGTAGACGTAGATACAACGGGAAGAGAAAAGCACGACNGGCGAAATCGGAACCGACGCCNCGGTTGCAACGCAAAGCCAAAGACAG] [+] EMBL CB685465 [TTTCCTTTGATAATTGTAGTACTCTTACAATAAAACCGGCCGGACAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCCTCTCCGGCCGGTTTAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAG CTTAG TTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACT GCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGGCAAGGCAC ] [-] EMBL BM037966 [ tttttttttTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGACTTAGATTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTATCCGGGAGACCTGTGGTTCTCACGGTAGACGAACCCAACCTTGCTGAACTCGAGACAAGGCACCCACTTGGATCGAAGCAGGTACTCGATCTGCTTCAAAAGATCCTCCAGGTGAGTGGTGGCAGGTACGATAGGGTCTCGAACTTCTTGATGCCCTCAATGTGGCACACCTGCATGCACTTGATCCTTCCGCCATNGCTGACGTATGCCGAAGCCCGAGTGGTGGAAGCGGAGGATGACGGGGANGCCGGGGAGGACTTGAGCCTTGGAATGGAGCACGGGAGGGGGCGAAGAGGCAACAGGGGGGGGCAAACAAGTAGACGTAGATACAACGGGAAGAGAAAAGCACGACNGGCGAAATCGGAACCGACGCCNCGGTTGCAACGCAAAGCCAAAGACAG] consensusID : consensus_8978#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 460 fasta sequence [TTTTTTTTTGGTCTCTCAAAAAGAAATACATTCGTTTACTAATTAACTTACACAAATAATTATGTCAGATCCTATATTCACAATACATTCGGTTAAACATAGAAACAAACATTGCAAACAAATACTTAAAAACAAACATAATTACGTGATACCATCCATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATG] [+] EMBL CF317390 [TTTTTTTTTGGTCTCTCAAAAAGAAATACATTCGTTTACTAATTAACTTACACAAATAATTATGTCAGATCCTATATTCACAATACATTCGGTTAAACATAGAAACAAACATTGCAAACAAATACTTAAAAACAAACATAATTACGTGATACCATCCATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGAT ] [+] EMBL CF301686 [ ttttTTTACTAATTAACTTACACAAATAATTATGTCAGATCCTATATTCACAATACATTCGGTTAAACATAGAAACAAACATTGCAAACAAATACTTAAAAACAAACATAATTACGTGATACCATCCATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATG] consensusID : consensus_8978#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 247 fasta sequence [ATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTNTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATCACGTAATTATGTTTGTTTTTAAGTATTTGTTTGCAAAAAAAAAAAA] [+] EMBL AU162864 [ATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTNTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATCACGTAATTATGTTTGTTTTTAAGTATTTGTTTGCAAAAAAAAAAAA] [+] EMBL AU197433 [ATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTNTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATCACGTAATTATGTTTGTTTTTAAGTATTTGTTTGCAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8978#0 -TTTCCTTTGATAATTGTAGTACTCTTACAATAAAACCGGCCGGACAGGGAGGGA-AGAG 58 consensus_8978#1 TTTTTTTTTGGTCTCTCAAAAA-----GAAATACATTCGTTTACTAATTAACTTACACAA 55 consensus_8978#2 ------------------------------------------------------------ consensus_8978#0 ATTATTACAT-ATGTGTTAAGAGCAGAGGCCATTGAGATGG-TACATAACCAAAC--TGT 114 consensus_8978#1 ATAATTATGTCAGATCCTATATTCACAATACATTCGGTTAAACATAGAAACAAACATTGC 115 consensus_8978#2 ------------------------------------------------------------ consensus_8978#0 AAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAG 174 consensus_8978#1 AAACAAATACTTAAAAACAAACATAATTACGTGATACCATCCATTTTTTTTATTGTCGAC 175 consensus_8978#2 ------------------------------------------------------------ consensus_8978#0 CTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTG 234 consensus_8978#1 GAATTTATCAGATATGCTCTAGATACATATCTTGTGTG-TATATAGCCGGAGCTTTGTTT 234 consensus_8978#2 --ATGTACCATCTCAATGGCCTCTGCTC--TTAACACA-TATGTAAT----AATCTCTTC 51 ** * * * * ** consensus_8978#0 CCACCC-TCTCCGGCCGGTT-TAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGG 292 consensus_8978#1 TCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGG 294 consensus_8978#2 CCTCCC-TNTCCGGCCGGTT-TTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATA 109 * * * * ** * ****** * * ****** * * *** consensus_8978#0 AGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGC-CATTGAGATGGTACATAACCA 351 consensus_8978#1 AGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGC-CATTGAGATGGTACATAACCA 353 consensus_8978#2 TGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAA 169 * *** * * * * * * * * * *** ** *** ** * * * consensus_8978#0 AACTGT--AAAATAAAAATA-TATAGCATATTATATATTGATATAT-CATCAACATAGCC 407 consensus_8978#1 AACTGT--AAAATAAAAATA-TATAGCATATTATATATTGATATAT-CATCAACATAGCC 409 consensus_8978#2 ATTCGTCGACAATAAAAAAAATGGATGGTATCACGTAATTATGTTTGTTTTTAAGTATTT 229 * ** * ******** * * * *** * ** * ** * * * * ** consensus_8978#0 CAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTT 467 consensus_8978#1 CAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATG--------- 460 consensus_8978#2 GTTTGCAAAAAAAAAAAA------------------------------------------ 247 **** * * consensus_8978#0 AGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAA 527 consensus_8978#1 ------------------------------------------------------------ consensus_8978#2 ------------------------------------------------------------ consensus_8978#0 CTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTT 587 consensus_8978#1 ------------------------------------------------------------ consensus_8978#2 ------------------------------------------------------------ consensus_8978#0 CTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAG 647 consensus_8978#1 ------------------------------------------------------------ consensus_8978#2 ------------------------------------------------------------ consensus_8978#0 CTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTA 707 consensus_8978#1 ------------------------------------------------------------ consensus_8978#2 ------------------------------------------------------------ consensus_8978#0 GACGAATCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGATCGAAGCAGGTACTC 767 consensus_8978#1 ------------------------------------------------------------ consensus_8978#2 ------------------------------------------------------------ consensus_8978#0 GATCTGCTTCAAAAGATCCTCCAGGTGAGTGGTGGCAGGTACGATAGGGTCTCGAACTTC 827 consensus_8978#1 ------------------------------------------------------------ consensus_8978#2 ------------------------------------------------------------ consensus_8978#0 TTGATGCCCTCAATGTGGCACACCTGCATGCACTTGATCCTTCCGCCATNGCTGACGTAT 887 consensus_8978#1 ------------------------------------------------------------ consensus_8978#2 ------------------------------------------------------------ consensus_8978#0 GCCGAAGCCCGAGTGGTGGAAGCGGAGGATGACGGGGANGCCGGGGAGGACTTGAGCCTT 947 consensus_8978#1 ------------------------------------------------------------ consensus_8978#2 ------------------------------------------------------------ consensus_8978#0 GGAATGGAGCACGGGAGGGGGCGAAGAGGCAACAGGGGGGGGCAAACAAGTAGACGTAGA 1007 consensus_8978#1 ------------------------------------------------------------ consensus_8978#2 ------------------------------------------------------------ consensus_8978#0 TACAACGGGAAGAGAAAAGCACGACNGGCGAAATCGGAACCGACGCCNCGGTTGCAACGC 1067 consensus_8978#1 ------------------------------------------------------------ consensus_8978#2 ------------------------------------------------------------ consensus_8978#0 AAAGCCAAAGACAG 1081 consensus_8978#1 -------------- consensus_8978#2 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||