cluster # 898

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Oryza sativa
cluster # 898 cluster # 898 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_898#0 length = 606 sequences # 1

consensus_898#1 length = 605 sequences # 1

consensusID : consensus_898#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [CAATCGTACTATTTGTGTACGATTCCTCAGACTGCTACTCGTCTCTCATCAACAAACACCAACTTCAACTGTTAAACCGCCCACAAAGTCAAACAACATCTGGACATAATAGTGATCAGCATTTAATCAATGCCCAATTAACTCTACGGACACAACTCGAGCAAACACTCTTACTAATACCGACGCCAAAACCAACCACCTGTGATCTAACGTATATTCCAGGCATAAACGGTTGGCCCCAGTTTCTCACATCGATTGGCCTCGAACAAGCCTATGATACGTATTCGGATTTTGTGAATCGTCGTTTAAATCCAGAAGTGTCATTTCATTTACCGCATATATATGCTCAATGTGGCACCGATTGGCCGGAAACATGGCACGAAGCACCATGCTCAAATGAGAATGAAATCCAACAGAACATCTTTCGTGATCGATGCCCAAACACTCCACAGAAAATATACTTAAACAAGACCCTTCGCATCGCTCACGCCAGGCAATTATCAAAGCTTTACCACCAGAACAAAAGCTCGATGCCAAATTCCATCATCCAGACCGAGCCCACCGTTTAACAACCATCATCGCATCATCATCATCATCGCAGAAAAC]

[+] EMBL CA755009             [CAATCGTACTATTTGTGTACGATTCCTCAGACTGCTACTCGTCTCTCATCAACAAACACCAACTTCAACTGTTAAACCGCCCACAAAGTCAAACAACATCTGGACATAATAGTGATCAGCATTTAATCAATGCCCAATTAACTCTACGGACACAACTCGAGCAAACACTCTTACTAATACCGACGCCAAAACCAACCACCTGTGATCTAACGTATATTCCAGGCATAAACGGTTGGCCCCAGTTTCTCACATCGATTGGCCTCGAACAAGCCTATGATACGTATTCGGATTTTGTGAATCGTCGTTTAAATCCAGAAGTGTCATTTCATTTACCGCATATATATGCTCAATGTGGCACCGATTGGCCGGAAACATGGCACGAAGCACCATGCTCAAATGAGAATGAAATCCAACAGAACATCTTTCGTGATCGATGCCCAAACACTCCACAGAAAATATACTTAAACAAGACCCTTCGCATCGCTCACGCCAGGCAATTATCAAAGCTTTACCACCAGAACAAAAGCTCGATGCCAAATTCCATCATCCAGACCGAGCCCACCGTTTAACAACCATCATCGCATCATCATCATCATCGCAGAAAAC]




>consensus_898#0
CAATCGTACTATTTGTGTACGATTCCTCAGACTGCTACTCGTCTCTCATCAACAAACACC
AACTTCAACTGTTAAACCGCCCACAAAGTCAAACAACATCTGGACATAATAGTGATCAGC
ATTTAATCAATGCCCAATTAACTCTACGGACACAACTCGAGCAAACACTCTTACTAATAC
CGACGCCAAAACCAACCACCTGTGATCTAACGTATATTCCAGGCATAAACGGTTGGCCCC
AGTTTCTCACATCGATTGGCCTCGAACAAGCCTATGATACGTATTCGGATTTTGTGAATC
GTCGTTTAAATCCAGAAGTGTCATTTCATTTACCGCATATATATGCTCAATGTGGCACCG
ATTGGCCGGAAACATGGCACGAAGCACCATGCTCAAATGAGAATGAAATCCAACAGAACA
TCTTTCGTGATCGATGCCCAAACACTCCACAGAAAATATACTTAAACAAGACCCTTCGCA
TCGCTCACGCCAGGCAATTATCAAAGCTTTACCACCAGAACAAAAGCTCGATGCCAAATT
CCATCATCCAGACCGAGCCCACCGTTTAACAACCATCATCGCATCATCATCATCATCGCA
GAAAAC

consensusID : consensus_898#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [CAATCGAACTATTTGAGTACGATTCCTCAGACAGCTACTCGTCTCTCATCAACAAACACCAATTCGGCTGTTAAACCGTCGACGAATTCGAAAAACAATGGAGTTAATAGTGATCAGCATTTAATCAATGCCAAATTAGCTCTACGGAAACAACTCGAGCAAACACTCTTACAAATACCGACGCCAAAACCAACGACCTGTGATCTAACGTATATTCCAGGCATAAACGGTTGGGCAGAGTTTCTCACATCGATTGGCCTCGAACAAGCCTATAATACGTATTCGGATTTTGTGAATCGTCGTTTAAATCCAGAAGTGTCATTTCATTTACCGCATATATGTGCTCAATGTGGTACCGATTGGTCGGTAACATGGCATGAAGTATCATGTTCAAATGAGAATGAAATCGAAGAAGAAATCTTTTGTGATCGATGTCGAAAGAGTTCACAGAAAAAAATACTTAAACAAGACCATTCGAATCGTTTACGTCAGGCATTTATGAAAGCTTTACNNACAGAAAAAGAGCTCGATGCCAAATTTCAATCATCAGGATCGAGCACAACCCGTTAACAACCATCATCATCATCATCATCATCATCGCAAAA]

[+] EMBL CA754877             [CAATCGAACTATTTGAGTACGATTCCTCAGACAGCTACTCGTCTCTCATCAACAAACACCAATTCGGCTGTTAAACCGTCGACGAATTCGAAAAACAATGGAGTTAATAGTGATCAGCATTTAATCAATGCCAAATTAGCTCTACGGAAACAACTCGAGCAAACACTCTTACAAATACCGACGCCAAAACCAACGACCTGTGATCTAACGTATATTCCAGGCATAAACGGTTGGGCAGAGTTTCTCACATCGATTGGCCTCGAACAAGCCTATAATACGTATTCGGATTTTGTGAATCGTCGTTTAAATCCAGAAGTGTCATTTCATTTACCGCATATATGTGCTCAATGTGGTACCGATTGGTCGGTAACATGGCATGAAGTATCATGTTCAAATGAGAATGAAATCGAAGAAGAAATCTTTTGTGATCGATGTCGAAAGAGTTCACAGAAAAAAATACTTAAACAAGACCATTCGAATCGTTTACGTCAGGCATTTATGAAAGCTTTACNNACAGAAAAAGAGCTCGATGCCAAATTTCAATCATCAGGATCGAGCACAACCCGTTAACAACCATCATCATCATCATCATCATCATCGCAAAA]




>consensus_898#1
CAATCGAACTATTTGAGTACGATTCCTCAGACAGCTACTCGTCTCTCATCAACAAACACC
AATTCGGCTGTTAAACCGTCGACGAATTCGAAAAACAATGGAGTTAATAGTGATCAGCAT
TTAATCAATGCCAAATTAGCTCTACGGAAACAACTCGAGCAAACACTCTTACAAATACCG
ACGCCAAAACCAACGACCTGTGATCTAACGTATATTCCAGGCATAAACGGTTGGGCAGAG
TTTCTCACATCGATTGGCCTCGAACAAGCCTATAATACGTATTCGGATTTTGTGAATCGT
CGTTTAAATCCAGAAGTGTCATTTCATTTACCGCATATATGTGCTCAATGTGGTACCGAT
TGGTCGGTAACATGGCATGAAGTATCATGTTCAAATGAGAATGAAATCGAAGAAGAAATC
TTTTGTGATCGATGTCGAAAGAGTTCACAGAAAAAAATACTTAAACAAGACCATTCGAAT
CGTTTACGTCAGGCATTTATGAAAGCTTTACNNACAGAAAAAGAGCTCGATGCCAAATTT
CAATCATCAGGATCGAGCACAACCCGTTAACAACCATCATCATCATCATCATCATCATCG
CAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_898#0      CAATCGTACTATTTGTGTACGATTCCTCAGACTGCTACTCGTCTCTCATCAACAAACACC 60
consensus_898#1      CAATCGAACTATTTGAGTACGATTCCTCAGACAGCTACTCGTCTCTCATCAACAAACACC 60
                     ****** ******** **************** ***************************

consensus_898#0      AACTTCAACTGTTAAACCGCCCACAAAGTCAAACAACATCTGGACATAATAGTGATCAGC 120
consensus_898#1      AA-TTCGGCTGTTAAACCGTCGACGAATTCGAAAAACAA-TGGAGTTAATAGTGATCAGC 118
                     ** ***  *********** * ** ** ** ** ****  ****  **************

consensus_898#0      ATTTAATCAATGCCCAATTAACTCTACGGACACAACTCGAGCAAACACTCTTACTAATAC 180
consensus_898#1      ATTTAATCAATGCCAAATTAGCTCTACGGAAACAACTCGAGCAAACACTCTTACAAATAC 178
                     ************** ***** ********* *********************** *****

consensus_898#0      CGACGCCAAAACCAACCACCTGTGATCTAACGTATATTCCAGGCATAAACGGTTGGCCCC 240
consensus_898#1      CGACGCCAAAACCAACGACCTGTGATCTAACGTATATTCCAGGCATAAACGGTTGGGCAG 238
                     **************** *************************************** *  

consensus_898#0      AGTTTCTCACATCGATTGGCCTCGAACAAGCCTATGATACGTATTCGGATTTTGTGAATC 300
consensus_898#1      AGTTTCTCACATCGATTGGCCTCGAACAAGCCTATAATACGTATTCGGATTTTGTGAATC 298
                     *********************************** ************************

consensus_898#0      GTCGTTTAAATCCAGAAGTGTCATTTCATTTACCGCATATATATGCTCAATGTGGCACCG 360
consensus_898#1      GTCGTTTAAATCCAGAAGTGTCATTTCATTTACCGCATATATGTGCTCAATGTGGTACCG 358
                     ****************************************** ************ ****

consensus_898#0      ATTGGCCGGAAACATGGCACGAAGCACCATGCTCAAATGAGAATGAAATCCAACAGAACA 420
consensus_898#1      ATTGGTCGGTAACATGGCATGAAGTATCATGTTCAAATGAGAATGAAATCGAAGAAGAAA 418
                     ***** *** ********* **** * **** ****************** ** *  * *

consensus_898#0      TCTTTCGTGATCGATGCCCAAACACTCCACAGAAAATA-TACTTAAACAAGACCCTTCGC 479
consensus_898#1      TCTTTTGTGATCGATGTCGAAAGAGTTCACAGAAAAAAATACTTAAACAAGACCATTCGA 478
                     ***** ********** * *** * * ********* * *************** **** 

consensus_898#0      ATCGCTCACGCCAGGCAATTATCAAAGCTTTACCACCAGAACAAAAGCTCGATGCCAAAT 539
consensus_898#1      ATCGTTTACGTCAGGCATTTATGAAAGCTTTACNNACAGAAAAAGAGCTCGATGCCAAAT 538
                     **** * *** ****** **** **********   ***** ** ***************

consensus_898#0      TCCA-TCATCCAGACCGAGCCCA-CCGTTTAACAACCATCATCG-CATCATCATCATCAT 596
consensus_898#1      TTCAATCATCAGGATCGAGCACAACCCGTTAACAACCATCATCATCATCATCATCATCAT 598
                     * ** *****  ** ***** ** **  ***************  ***************

consensus_898#0      CGCAGAAAAC 606
consensus_898#1      CGCAAAA--- 605
                     **** **