These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1325 fasta sequence [CTAATCTCGGGTCCGTGTCGAAGAGAGGAGAACACGGTCTCACACTTTTCCCCACCTTTTCACCGTCGGCGAGGGCGCGCCGCCGCTGATGTCGCAGCAGCAGCAGGCGCCGGCGCCGCCGTACCGGCCGTACCGGCAGGTGAGGGCGGCGACCCCGCACAGCCGCGCCGTCTCGTGCGTGAGGTTCTCCCCATGCGGGCGCCTCCTCGCGACGGCGTCCCTCGACGGCACGGTCGCGCTGCTCTCCCCGTCGTCGCTCGCCGCCATCGCCACCCTGCGGGGGCACGCCGACGGCGTGTCCGACATCTCCTGGTCCACGGACTC-GTTCTACCTCTGCTCCGCCTCCGACGACCGCACCCTCCGCATCTGGGACGTCCGCCCCGTCCTCGCCGGCCTCAACCCCGGCAGCGGCGGCGGCGGCGGCGGCGCCCAGCCCGCCGACCCCAACGCCGACCGCTGCATCCGCGTGCTCAAGGGCCACACCAACTTCGTCTTTAGCGCCAACTTCAACCCGCAGACGAACAGCACGGTCGCGTCCGGGGGGTTCGACTGCACCGTGCGCATCTGGGACGTCAAGAGCGGCCGCTGCGTCCGCGCCATCGACGCGCACTCCGAGCCCGTCACCTCCGTCCACTTCATCCGCGACGGCTCCATCATCGTGTCGGGGAGCCATGATGGGACCTGCAAGATTTGGGATGCGGGGACTGGGTCTTGCCTCAAGACGGTCATCGACGAGAAGAAGCCCGCGGTGTCATTCTCCATGTTCTCGCCCAATGGCAAGTTTATCCTCGTCGCCGCGCTCGACGACACACTGAAACTATGCAACTTTGCAAGTGGCAAGTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTCCAGTCCGCGTTTTCCGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGATCTCCAAGGGAAGAACATTCTTCAGAAACTTGAAGGCCATACTGACACTGTCATCTCGGTGTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGTGAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCTTGTGTGAACCTGGACAGCAATAGCTATCTAAAAGAGAAATATGCTTCTACTTTTATGGAGCACTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCACCCGGCACTGCTTTGTTTCAATGTAAACAATCCTTTTGACCTCTGGATATCGGTAGTTCATCTAATCTCATG] [+] EMBL AK111653 [CTAATCTCGGGTCCGTGTCGAAGAGAGGAGAACACGGTCTCACACTTTTCCCCACCTTTTCACCGTCGGCGAGGGCGCGCCGCCGCTGATGTCGCAGCAGCAGCAGGCGCCGGCGCCGCCGTACCGGCCGTACCGGCAGGTGAGGGCGGCGACCCCGCACAGCCGCGCCGTCTCGTGCGTGAGGTTCTCCCCATGCGGGCGCCTCCTCGCGACGGCGTCCCTCGACGGCACGGTCGCGCTGCTCTCCCCGTCGTCGCTCGCCGCCATCGCCACCCTGCGGGGGCACGCCGACGGCGTGTCCGACATCTCCTGGTCCACGGACTC GTTCTACCCCTGCTCCGCCTCCGACGACCGCACCCTCCGCATCTGGGACGTCCGCCCCGTCCTCGCCGGCCTCAACCCCGGCAGCGGCGGCGGCGGCGGCGGCGCCCAGCCCGCCGACCCCAACGCCGACCGCTGCATCCGCGTGCTCAAGGGCCACACCAACTTCGTCTTTAGCGCCAACTTCAACCCGCAGACGAACAGCACGGTCGCGTCCGGGGGGTTCGACTGCACCGTGCGCATCTGGGACGTCAAGAGCGGCCGCTGCGTCCGCGCCATCGACGCGCACTCCGAGCCCGTCACCTCCGTCCACTTCATCCGCGACGGCTCCATCATCGTGTCGGGGAGCCATGATGGGACCTGCAAGATTTGGGATGCGGGGACTGGGTCTTGCCTCAAGACGGTCATCGACGAGAAGAAGCCCGCGGTGTCATTCTCCATGTTCTCGCCCAATGGCAAGTTTATCCTCGTCGCCGCGCTCGACGACACACTGAAACTATGCAACTTTGCAAGTGGCAAGTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTCCAGTCCGCGTTTTCCGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGATCTCCAAGGGAAGAACATTCTTCAGAAACTTGAAGGCCATACTGACACTGTCATCTCGGTGTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGTGAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCTTGTGTGAACCTGGACAGCAATAGCTATCTAAAAGAGAAATATGCTTCTACTTTTATGGAGCACTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCACCCGGCACTGCTTTGTTTCAATGTAAACAATCCTTTTGACCTCTGGATATCGGTAGTTCATCTAATCTCATG] [+] EMBL AU164025 [ ccgGTCGGCGAGGGCGCGCCGCCGCTGATGTCGCAGCAGCAGCAGGCGCCGGCGCCGCCGTACCGGCCGTACCGGCAGGTGA GGCGGCGACCCCGCACAGCCGCGCCGTCTCGTGCGTGAGGTTCTCCCCATGCGGGCGCCTCCTCGCGACGGCGTCCCTCGACGGCACGGTCGCGCTGCTCTCCCCGTCGTCGCTCGCCGCCATCGCCACCCTGCGGGGGCACGCCGACGGCGTGTCCGACATCTCCTGGTCCACGGACTC GTTCTACCTCTGCTCCGCCTCCGACGACCGCACCCTCCGCATCTGGGACGTCCGCCCCGTCCTCGCCGGCCTCAACCCCGGCAGCGGCGGCGGCGGCGGCGGCGCCCAGCCCGCCGACCCCAACGCCGACCGCTGCATCCGCGTGCTCAAGGGCCACACCAACTTCGTCTTTAGCGCCAACTTCAACCCGCAGACGAACAGCACGGTCGCGTCCGGGGGGTTCGACTGCACCGTGCGCATCTGG ] [+] EMBL CB672917 [ GGCGCGCCCCCTCTGATGTCGCAGCAGCAGCAGGCGCCGGCGCCGCCGTACCGGCCGTACCGGCAGGTGAGGGCGGCGACCCCGCACAGCCGCGCCGTCTCGTGCGTGAGGTTCTCCCCATGCGGGCGCCTCCTCGCGACGGCGTCCCTCTACGGCACGGTCGCGCTGCTCTCCCCGTCGTCGCTCGCCGCCATCGCCACCCTGCGGGGGCACGCCGACGGCGTGTCCGACATCTCCTGGTCCACGGACTCAGTTCTACCTCTGCTCCGCCTCCGACGACCGCACCCTCCGCATCTGGGACGTCCGCCCCGTCCTCGCCGGCCTCAACCCCGGCAGCGGCGGCGGCGGCGGCGGCTCCTTCCCCTTCGACCCCAACGCCGACCGCTGCATCGGCATGCTCTAGGGCCACATCAACTTCGTCTTTATCGCCAACTTTGACCCTTACACAAACAGCTCGGTCG ] [+] EMBL OSC2631 [ GCGCGCCGCCGCTGATGTCGCAGCAGCAGCAGGCGCCGGCGCCGCCGTACCGGCCGTACCGGCAGGTGAGGGCGGCGACCCCGNACAGCCGCGCCGTCTCGTGCGTGAGGTTCTCCCCATGCGGGCGCCTCCTCGNGACGGCGTCCCTNGACGGCACGGTCGCGCTGCTCTCCCCGTCGTCGCTCGCCGCCATCGCCACCCTGCGGGGGCACGCCGACGG TTTNCNGACATCTCCTGGTCCACGGACTC GTTCTACCTCTGCTCCGGCT ] [-] EMBL CB672918 [ TCGACTGCACCGTGCGCATCTGGGACGTCAAGAGCGGCCGCTGCGTCCGCGCCATCGACGCGCACTCCGAGCCCGTCACCTCCGTCCACTTCATCCGCGACGGCTCCATCATCGTGTCGGGGAGCCATGATGGGACCTGCAAGATTTGGGATGCGGGGACTGGGTCTTGCCTCAAGACGGTCATCGACGAGAAGAAGCCCGCGGTGTCATTCTCCATGTTCTCGCCCAATGGCAAGTTTATCCTCGTCGCCGCGCTCGACGACACACTGAAACTATGCAACTTTGCAAGTGGCAAGTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTCCAGTCCGCGTTTTCCGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGATCTCCAAGGGAAGAACATTCTTCAGAAACTTGAAGGCCATACTGACACTGTCATCTCGGTGTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGTGAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCTTGTGTGAACCTGGCCAGCAATAGCTATCTAAAAGAGAAATATGCTTCTACTTTTATGGAGCACTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCACCCGCCTAAGGGGTGTTTCAATGTAAAC ] consensusID : consensus_8986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [AGACAAAGGGGCTGGGTCTTGCCTCCACACGGTCATCGACGAGAAGAAGGCCCCGGGGTCATTCTCCGTGTTCTCGCCCAATGGCAAGTTTATTCTTGTCGCCGCGCTCGGCGACACACTGAAACTATGCAACTTTGCAAGTGGCAAGTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTTCAGTCCGCGTTTTCCGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGATCTCCAAGGGAAGAACATTCTTCAGAAACCTGAAGGCCATACTGACACTGTCATCTCGGTGTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGTGAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCTTGTGTGAACCTGGACAGCAATAGTAGCTATCTAAAAGAGAAATATGCTTCTACTTTTATGGAGCCCTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCCCCCGGCCCTGCTTTGTTTCAATGTAAACAATCCTTTTGACCTCTGGAAAAAAAAAAAAAA] [-] EMBL CA762300 [AGACAAAGGGGCTGGGTCTTGCCTCCACACGGTCATCGACGAGAAGAAGGCCCCGGGGTCATTCTCCGTGTTCTCGCCCAATGGCAAGTTTATTCTTGTCGCCGCGCTCGGCGACACACTGAAACTATGCAACTTTGCAAGTGGCAAGTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTTCAGTCCGCGTTTTCCGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGATCTCCAAGGGAAGAACATTCTTCAGAAACCTGAAGGCCATACTGACACTGTCATCTCGGTGTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGTGAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCTTGTGTGAACCTGGACAGCAATAGTAGCTATCTAAAAGAGAAATATGCTTCTACTTTTATGGAGCCCTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCCCCCGGCCCTGCTTTGTTTCAATGTAAACAATCCTTTTGACCTCTGGAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8986#0 CTAATCTCGGGTCCGTGTCGAAGAGAGGAGAACACGGTCTCACACTTTTCCCCACCTTTT 60 consensus_8986#1 ------------------------------------------------------------ consensus_8986#0 CACCGTCGGCGAGGGCGCGCCGCCGCTGATGTCGCAGCAGCAGCAGGCGCCGGCGCCGCC 120 consensus_8986#1 ------------------------------------------------------------ consensus_8986#0 GTACCGGCCGTACCGGCAGGTGAGGGCGGCGACCCCGCACAGCCGCGCCGTCTCGTGCGT 180 consensus_8986#1 ------------------------------------------------------------ consensus_8986#0 GAGGTTCTCCCCATGCGGGCGCCTCCTCGCGACGGCGTCCCTCGACGGCACGGTCGCGCT 240 consensus_8986#1 ------------------------------------------------------------ consensus_8986#0 GCTCTCCCCGTCGTCGCTCGCCGCCATCGCCACCCTGCGGGGGCACGCCGACGGCGTGTC 300 consensus_8986#1 ------------------------------------------------------------ consensus_8986#0 CGACATCTCCTGGTCCACGGACTCGTTCTACCTCTGCTCCGCCTCCGACGACCGCACCCT 360 consensus_8986#1 ------------------------------------------------------------ consensus_8986#0 CCGCATCTGGGACGTCCGCCCCGTCCTCGCCGGCCTCAACCCCGGCAGCGGCGGCGGCGG 420 consensus_8986#1 ------------------------------------------------------------ consensus_8986#0 CGGCGGCGCCCAGCCCGCCGACCCCAACGCCGACCGCTGCATCCGCGTGCTCAAGGGCCA 480 consensus_8986#1 ------------------------------------------------------------ consensus_8986#0 CACCAACTTCGTCTTTAGCGCCAACTTCAACCCGCAGACGAACAGCACGGTCGCGTCCGG 540 consensus_8986#1 ------------------------------------------------------------ consensus_8986#0 GGGGTTCGACTGCACCGTGCGCATCTGGGACGTCAAGAGCGGCCGCTGCGTCCGCGCCAT 600 consensus_8986#1 ------------------------------------------------------------ consensus_8986#0 CGACGCGCACTCCGAGCCCGTCACCTCCGTCCACTTCATCCGCGACGGCTCCATCATCGT 660 consensus_8986#1 ------------------------------------------------------------ consensus_8986#0 GTCGGGGAGCCATGATGGGACCTGCAAGATTTGGGATGCGGGGACTGGGTCTTGCCTCAA 720 consensus_8986#1 ---------------------------------AGACAAAGGGGCTGGGTCTTGCCTCCA 27 ** *** ************** * consensus_8986#0 GACGGTCATCGACGAGAAGAAGCCCGCGGTGTCATTCTCCATGTTCTCGCCCAATGGCAA 780 consensus_8986#1 CACGGTCATCGACGAGAAGAAGGCCCCGGGGTCATTCTCCGTGTTCTCGCCCAATGGCAA 87 ********************* ** *** ********** ******************* consensus_8986#0 GTTTATCCTCGTCGCCGCGCTCGACGACACACTGAAACTATGCAACTTTGCAAGTGGCAA 840 consensus_8986#1 GTTTATTCTTGTCGCCGCGCTCGGCGACACACTGAAACTATGCAACTTTGCAAGTGGCAA 147 ****** ** ************* ************************************ consensus_8986#0 GTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTCCAGTCCGCGTTTTC 900 consensus_8986#1 GTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTTCAGTCCGCGTTTTC 207 ********************************************* ************** consensus_8986#0 CGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGA 960 consensus_8986#1 CGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGA 267 ************************************************************ consensus_8986#0 TCTCCAAGGGAAGAACATTCTTCAGAAACTTGAAGGCCATACTGACACTGTCATCTCGGT 1020 consensus_8986#1 TCTCCAAGGGAAGAACATTCTTCAGAAACCTGAAGGCCATACTGACACTGTCATCTCGGT 327 ***************************** ****************************** consensus_8986#0 GTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGT 1080 consensus_8986#1 GTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGT 387 ************************************************************ consensus_8986#0 GAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCT 1140 consensus_8986#1 GAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCT 447 ************************************************************ consensus_8986#0 TGTGTGAACCTGGACAGCAATAG---CTATCTAAAAGAGAAATATGCTTCTACTTTTATG 1197 consensus_8986#1 TGTGTGAACCTGGACAGCAATAGTAGCTATCTAAAAGAGAAATATGCTTCTACTTTTATG 507 *********************** ********************************** consensus_8986#0 GAGCACTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCACCCG 1257 consensus_8986#1 GAGCCCTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCCCCCG 567 **** ************************************************** **** consensus_8986#0 GCACTGCTTTGTTTCAATGTAAACAATCCTTTTGACCTCTGGATATCGGTAGTTCATCTA 1317 consensus_8986#1 GCCCTGCTTTGTTTCAATGTAAACAATCCTTTTGACCTCTGGAAAAAAAAAAAAAA---- 623 ** **************************************** * * * consensus_8986#0 ATCTCATG 1325 consensus_8986#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||