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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1325 fasta sequence
[CTAATCTCGGGTCCGTGTCGAAGAGAGGAGAACACGGTCTCACACTTTTCCCCACCTTTTCACCGTCGGCGAGGGCGCGCCGCCGCTGATGTCGCAGCAGCAGCAGGCGCCGGCGCCGCCGTACCGGCCGTACCGGCAGGTGAGGGCGGCGACCCCGCACAGCCGCGCCGTCTCGTGCGTGAGGTTCTCCCCATGCGGGCGCCTCCTCGCGACGGCGTCCCTCGACGGCACGGTCGCGCTGCTCTCCCCGTCGTCGCTCGCCGCCATCGCCACCCTGCGGGGGCACGCCGACGGCGTGTCCGACATCTCCTGGTCCACGGACTC-GTTCTACCTCTGCTCCGCCTCCGACGACCGCACCCTCCGCATCTGGGACGTCCGCCCCGTCCTCGCCGGCCTCAACCCCGGCAGCGGCGGCGGCGGCGGCGGCGCCCAGCCCGCCGACCCCAACGCCGACCGCTGCATCCGCGTGCTCAAGGGCCACACCAACTTCGTCTTTAGCGCCAACTTCAACCCGCAGACGAACAGCACGGTCGCGTCCGGGGGGTTCGACTGCACCGTGCGCATCTGGGACGTCAAGAGCGGCCGCTGCGTCCGCGCCATCGACGCGCACTCCGAGCCCGTCACCTCCGTCCACTTCATCCGCGACGGCTCCATCATCGTGTCGGGGAGCCATGATGGGACCTGCAAGATTTGGGATGCGGGGACTGGGTCTTGCCTCAAGACGGTCATCGACGAGAAGAAGCCCGCGGTGTCATTCTCCATGTTCTCGCCCAATGGCAAGTTTATCCTCGTCGCCGCGCTCGACGACACACTGAAACTATGCAACTTTGCAAGTGGCAAGTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTCCAGTCCGCGTTTTCCGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGATCTCCAAGGGAAGAACATTCTTCAGAAACTTGAAGGCCATACTGACACTGTCATCTCGGTGTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGTGAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCTTGTGTGAACCTGGACAGCAATAGCTATCTAAAAGAGAAATATGCTTCTACTTTTATGGAGCACTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCACCCGGCACTGCTTTGTTTCAATGTAAACAATCCTTTTGACCTCTGGATATCGGTAGTTCATCTAATCTCATG]
[+] EMBL AK111653 [CTAATCTCGGGTCCGTGTCGAAGAGAGGAGAACACGGTCTCACACTTTTCCCCACCTTTTCACCGTCGGCGAGGGCGCGCCGCCGCTGATGTCGCAGCAGCAGCAGGCGCCGGCGCCGCCGTACCGGCCGTACCGGCAGGTGAGGGCGGCGACCCCGCACAGCCGCGCCGTCTCGTGCGTGAGGTTCTCCCCATGCGGGCGCCTCCTCGCGACGGCGTCCCTCGACGGCACGGTCGCGCTGCTCTCCCCGTCGTCGCTCGCCGCCATCGCCACCCTGCGGGGGCACGCCGACGGCGTGTCCGACATCTCCTGGTCCACGGACTC GTTCTACCCCTGCTCCGCCTCCGACGACCGCACCCTCCGCATCTGGGACGTCCGCCCCGTCCTCGCCGGCCTCAACCCCGGCAGCGGCGGCGGCGGCGGCGGCGCCCAGCCCGCCGACCCCAACGCCGACCGCTGCATCCGCGTGCTCAAGGGCCACACCAACTTCGTCTTTAGCGCCAACTTCAACCCGCAGACGAACAGCACGGTCGCGTCCGGGGGGTTCGACTGCACCGTGCGCATCTGGGACGTCAAGAGCGGCCGCTGCGTCCGCGCCATCGACGCGCACTCCGAGCCCGTCACCTCCGTCCACTTCATCCGCGACGGCTCCATCATCGTGTCGGGGAGCCATGATGGGACCTGCAAGATTTGGGATGCGGGGACTGGGTCTTGCCTCAAGACGGTCATCGACGAGAAGAAGCCCGCGGTGTCATTCTCCATGTTCTCGCCCAATGGCAAGTTTATCCTCGTCGCCGCGCTCGACGACACACTGAAACTATGCAACTTTGCAAGTGGCAAGTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTCCAGTCCGCGTTTTCCGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGATCTCCAAGGGAAGAACATTCTTCAGAAACTTGAAGGCCATACTGACACTGTCATCTCGGTGTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGTGAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCTTGTGTGAACCTGGACAGCAATAGCTATCTAAAAGAGAAATATGCTTCTACTTTTATGGAGCACTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCACCCGGCACTGCTTTGTTTCAATGTAAACAATCCTTTTGACCTCTGGATATCGGTAGTTCATCTAATCTCATG]
[+] EMBL AU164025 [ ccgGTCGGCGAGGGCGCGCCGCCGCTGATGTCGCAGCAGCAGCAGGCGCCGGCGCCGCCGTACCGGCCGTACCGGCAGGTGA GGCGGCGACCCCGCACAGCCGCGCCGTCTCGTGCGTGAGGTTCTCCCCATGCGGGCGCCTCCTCGCGACGGCGTCCCTCGACGGCACGGTCGCGCTGCTCTCCCCGTCGTCGCTCGCCGCCATCGCCACCCTGCGGGGGCACGCCGACGGCGTGTCCGACATCTCCTGGTCCACGGACTC GTTCTACCTCTGCTCCGCCTCCGACGACCGCACCCTCCGCATCTGGGACGTCCGCCCCGTCCTCGCCGGCCTCAACCCCGGCAGCGGCGGCGGCGGCGGCGGCGCCCAGCCCGCCGACCCCAACGCCGACCGCTGCATCCGCGTGCTCAAGGGCCACACCAACTTCGTCTTTAGCGCCAACTTCAACCCGCAGACGAACAGCACGGTCGCGTCCGGGGGGTTCGACTGCACCGTGCGCATCTGG ]
[+] EMBL CB672917 [ GGCGCGCCCCCTCTGATGTCGCAGCAGCAGCAGGCGCCGGCGCCGCCGTACCGGCCGTACCGGCAGGTGAGGGCGGCGACCCCGCACAGCCGCGCCGTCTCGTGCGTGAGGTTCTCCCCATGCGGGCGCCTCCTCGCGACGGCGTCCCTCTACGGCACGGTCGCGCTGCTCTCCCCGTCGTCGCTCGCCGCCATCGCCACCCTGCGGGGGCACGCCGACGGCGTGTCCGACATCTCCTGGTCCACGGACTCAGTTCTACCTCTGCTCCGCCTCCGACGACCGCACCCTCCGCATCTGGGACGTCCGCCCCGTCCTCGCCGGCCTCAACCCCGGCAGCGGCGGCGGCGGCGGCGGCTCCTTCCCCTTCGACCCCAACGCCGACCGCTGCATCGGCATGCTCTAGGGCCACATCAACTTCGTCTTTATCGCCAACTTTGACCCTTACACAAACAGCTCGGTCG ]
[+] EMBL OSC2631 [ GCGCGCCGCCGCTGATGTCGCAGCAGCAGCAGGCGCCGGCGCCGCCGTACCGGCCGTACCGGCAGGTGAGGGCGGCGACCCCGNACAGCCGCGCCGTCTCGTGCGTGAGGTTCTCCCCATGCGGGCGCCTCCTCGNGACGGCGTCCCTNGACGGCACGGTCGCGCTGCTCTCCCCGTCGTCGCTCGCCGCCATCGCCACCCTGCGGGGGCACGCCGACGG TTTNCNGACATCTCCTGGTCCACGGACTC GTTCTACCTCTGCTCCGGCT ]
[-] EMBL CB672918 [ TCGACTGCACCGTGCGCATCTGGGACGTCAAGAGCGGCCGCTGCGTCCGCGCCATCGACGCGCACTCCGAGCCCGTCACCTCCGTCCACTTCATCCGCGACGGCTCCATCATCGTGTCGGGGAGCCATGATGGGACCTGCAAGATTTGGGATGCGGGGACTGGGTCTTGCCTCAAGACGGTCATCGACGAGAAGAAGCCCGCGGTGTCATTCTCCATGTTCTCGCCCAATGGCAAGTTTATCCTCGTCGCCGCGCTCGACGACACACTGAAACTATGCAACTTTGCAAGTGGCAAGTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTCCAGTCCGCGTTTTCCGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGATCTCCAAGGGAAGAACATTCTTCAGAAACTTGAAGGCCATACTGACACTGTCATCTCGGTGTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGTGAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCTTGTGTGAACCTGGCCAGCAATAGCTATCTAAAAGAGAAATATGCTTCTACTTTTATGGAGCACTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCACCCGCCTAAGGGGTGTTTCAATGTAAAC ]
consensusID : consensus_8986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[AGACAAAGGGGCTGGGTCTTGCCTCCACACGGTCATCGACGAGAAGAAGGCCCCGGGGTCATTCTCCGTGTTCTCGCCCAATGGCAAGTTTATTCTTGTCGCCGCGCTCGGCGACACACTGAAACTATGCAACTTTGCAAGTGGCAAGTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTTCAGTCCGCGTTTTCCGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGATCTCCAAGGGAAGAACATTCTTCAGAAACCTGAAGGCCATACTGACACTGTCATCTCGGTGTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGTGAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCTTGTGTGAACCTGGACAGCAATAGTAGCTATCTAAAAGAGAAATATGCTTCTACTTTTATGGAGCCCTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCCCCCGGCCCTGCTTTGTTTCAATGTAAACAATCCTTTTGACCTCTGGAAAAAAAAAAAAAA]
[-] EMBL CA762300 [AGACAAAGGGGCTGGGTCTTGCCTCCACACGGTCATCGACGAGAAGAAGGCCCCGGGGTCATTCTCCGTGTTCTCGCCCAATGGCAAGTTTATTCTTGTCGCCGCGCTCGGCGACACACTGAAACTATGCAACTTTGCAAGTGGCAAGTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTTCAGTCCGCGTTTTCCGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGATCTCCAAGGGAAGAACATTCTTCAGAAACCTGAAGGCCATACTGACACTGTCATCTCGGTGTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGTGAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCTTGTGTGAACCTGGACAGCAATAGTAGCTATCTAAAAGAGAAATATGCTTCTACTTTTATGGAGCCCTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCCCCCGGCCCTGCTTTGTTTCAATGTAAACAATCCTTTTGACCTCTGGAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8986#0 CTAATCTCGGGTCCGTGTCGAAGAGAGGAGAACACGGTCTCACACTTTTCCCCACCTTTT 60
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 CACCGTCGGCGAGGGCGCGCCGCCGCTGATGTCGCAGCAGCAGCAGGCGCCGGCGCCGCC 120
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 GTACCGGCCGTACCGGCAGGTGAGGGCGGCGACCCCGCACAGCCGCGCCGTCTCGTGCGT 180
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 GAGGTTCTCCCCATGCGGGCGCCTCCTCGCGACGGCGTCCCTCGACGGCACGGTCGCGCT 240
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 GCTCTCCCCGTCGTCGCTCGCCGCCATCGCCACCCTGCGGGGGCACGCCGACGGCGTGTC 300
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 CGACATCTCCTGGTCCACGGACTCGTTCTACCTCTGCTCCGCCTCCGACGACCGCACCCT 360
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 CCGCATCTGGGACGTCCGCCCCGTCCTCGCCGGCCTCAACCCCGGCAGCGGCGGCGGCGG 420
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 CGGCGGCGCCCAGCCCGCCGACCCCAACGCCGACCGCTGCATCCGCGTGCTCAAGGGCCA 480
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 CACCAACTTCGTCTTTAGCGCCAACTTCAACCCGCAGACGAACAGCACGGTCGCGTCCGG 540
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 GGGGTTCGACTGCACCGTGCGCATCTGGGACGTCAAGAGCGGCCGCTGCGTCCGCGCCAT 600
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 CGACGCGCACTCCGAGCCCGTCACCTCCGTCCACTTCATCCGCGACGGCTCCATCATCGT 660
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 GTCGGGGAGCCATGATGGGACCTGCAAGATTTGGGATGCGGGGACTGGGTCTTGCCTCAA 720
consensus_8986#1 ---------------------------------AGACAAAGGGGCTGGGTCTTGCCTCCA 27
** *** ************** *
consensus_8986#0 GACGGTCATCGACGAGAAGAAGCCCGCGGTGTCATTCTCCATGTTCTCGCCCAATGGCAA 780
consensus_8986#1 CACGGTCATCGACGAGAAGAAGGCCCCGGGGTCATTCTCCGTGTTCTCGCCCAATGGCAA 87
********************* ** *** ********** *******************
consensus_8986#0 GTTTATCCTCGTCGCCGCGCTCGACGACACACTGAAACTATGCAACTTTGCAAGTGGCAA 840
consensus_8986#1 GTTTATTCTTGTCGCCGCGCTCGGCGACACACTGAAACTATGCAACTTTGCAAGTGGCAA 147
****** ** ************* ************************************
consensus_8986#0 GTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTCCAGTCCGCGTTTTC 900
consensus_8986#1 GTTCTTGAAGATGTACAGTGGACATGTTAACAGAAAGTATTGCCTTCAGTCCGCGTTTTC 207
********************************************* **************
consensus_8986#0 CGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGA 960
consensus_8986#1 CGTTACAAATGGGAAGTATATTGTTAGTGGATCAGAAGACAACTGTGTGTACATATGGGA 267
************************************************************
consensus_8986#0 TCTCCAAGGGAAGAACATTCTTCAGAAACTTGAAGGCCATACTGACACTGTCATCTCGGT 1020
consensus_8986#1 TCTCCAAGGGAAGAACATTCTTCAGAAACCTGAAGGCCATACTGACACTGTCATCTCGGT 327
***************************** ******************************
consensus_8986#0 GTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGT 1080
consensus_8986#1 GTCCTGCCATCCAACGGAGAACAAAATTGCGTCGGGCGGCCTCGACAATGATAGGACTGT 387
************************************************************
consensus_8986#0 GAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCT 1140
consensus_8986#1 GAGACTATGGCTTCAAGATGGCTGATGAATTTGCAGAAGGAATGTGCCTGATACAACTCT 447
************************************************************
consensus_8986#0 TGTGTGAACCTGGACAGCAATAG---CTATCTAAAAGAGAAATATGCTTCTACTTTTATG 1197
consensus_8986#1 TGTGTGAACCTGGACAGCAATAGTAGCTATCTAAAAGAGAAATATGCTTCTACTTTTATG 507
*********************** **********************************
consensus_8986#0 GAGCACTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCACCCG 1257
consensus_8986#1 GAGCCCTCTTGTATGTATCTATCCCTGGAGGGATAAGAAAAGAGCTGTTAATTTCCCCCG 567
**** ************************************************** ****
consensus_8986#0 GCACTGCTTTGTTTCAATGTAAACAATCCTTTTGACCTCTGGATATCGGTAGTTCATCTA 1317
consensus_8986#1 GCCCTGCTTTGTTTCAATGTAAACAATCCTTTTGACCTCTGGAAAAAAAAAAAAAA---- 623
** **************************************** * * *
consensus_8986#0 ATCTCATG 1325
consensus_8986#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||