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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1171 fasta sequence
[GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCCACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCTTCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGCGGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGATTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGCGGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAGGCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATGGACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTTAAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATAACATTGGTGTTTACAGAAAAAAAAAAAAAGA]
[+] EMBL AK111981 [GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCCACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCTTCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGCGGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGATTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGCGGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAGGCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATGGACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTTAAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATAACATTG ]
[+] EMBL AK111906 [GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCCACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCTTCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGCGGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGATTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGCGGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCGGACGCGAGATTAAAGGCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATGGACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTTAAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATAACAT ]
[+] EMBL CB658030 [GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCCACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCTTCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGCGGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGATTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGCGGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAGGCCC ]
[-] EMBL CB658031 [ GTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAGGCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATGGACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTTAAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATAACATTGGTGTTTACAGAAAAAAAAAAAAAGA]
[+] EMBL OS1166A [ aaGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAAT ]
consensusID : consensus_8993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence
[CGTTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTNTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTAAAAAAAAAAAAAA]
[+] EMBL C98215 [CGTTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTNTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8993#0 GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCC 60
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 ACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCT 120
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 TCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGC 180
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 GGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGA 240
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 TTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGC 300
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 GGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTT 360
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 AGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAG 420
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 ATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAA 480
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 ATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAAT 540
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 GCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCC 600
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 TCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAAC 660
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 CATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAG 720
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 GCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATG 780
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 GACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAA 840
consensus_8993#1 --------------------CGTTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAA 40
**************************************
consensus_8993#0 CGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGG 900
consensus_8993#1 CGGTGCTTGTNTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGG 100
********** *************************************************
consensus_8993#0 CATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGA 960
consensus_8993#1 CATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGA 160
************************************************************
consensus_8993#0 AGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTG 1020
consensus_8993#1 AGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTG 220
************************************************************
consensus_8993#0 GTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTT 1080
consensus_8993#1 GTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTAAAAAAAAAAAAAA- 279
********************************************** * *
consensus_8993#0 AAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATA 1140
consensus_8993#1 ------------------------------------------------------------
consensus_8993#0 ACATTGGTGTTTACAGAAAAAAAAAAAAAGA 1171
consensus_8993#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||