|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1891 fasta sequence
[CCTCCTCCTCGTCACCTCACCTGCACCTGCACCAACGCGAGAGATCATGGCGAAGAGATCGTCTCCTGATCCCGCATCATCTTCTCCATCTGCATCATCCTCGCCGTCGTCTCCTTCCTCCTCTTCCTCCGAGGATTCCTCTTCGCCCATGTCGATGCCCTGCAAGAGGAGGGCGAGGCCGAGGACGGACAAGAGCACCGGCAAGGCCAAGAGGCCCAAGAAGGAGAGCAAGGAGGTGGTTGATCCTTCTTCCAATGGCGGTGGCGGCGGCGGCGGCGGCAAGAGGAGTTCTATCTACAGGGGAGTCACCAGGTATGCGTCTCTGCATGGCATCGGTGGACTGGCAGATTTGAGGCCCATCTGTGGGACAAGAATTGCTCCACTTCACTTCAGAACAAGAAGAAAGGGAGGCAAGTCTATTTGGGGGCTTATGATAGTGAAGAGGCAGCTGCTCGTGCATATGACCTTGCAGCTCTTAAGTACTGGGGTCCTGAGACAGTGCTCAATTTCCCACTGGAGGAATATGAGAAGGAGAGGTCGGAGATGGAGGGTGTGTCGAGGGAGGAGTACCTGGCCTCCCTCCGCCGCCGGAGCAGCGGTTTCTCCAGGGGTGTCTCCAAGTACAGAGGCGTTGCCAGGCATCACCACAATGGGCGGTGGGAGGCACGGATAGGGCGGGTCCTGGGGAACAAGTACCTCTACCTGGGTACTTTCGATACTCAAGAGGAGGCAGCCAAGGCC-TATGATCTTGCT-GCAATTGAATACCGAGGTGCCAATGCGGTAACCAACTTCGACATCAGCTGCTACCTGGACCAGCCACAGTTACTGGCACAGCTGCAACAGGAACCACAGTTACTGGCACAACTGCAACAAGAGCTACAGGTGGTGCCAGCATTACATGAAGAGCCTCAAGATGATGACCGAAGTGAGAATGCAGTCCAAGAGCTCAGTTCCAGTGAAGCAAATACATCAAGTGACAACAATGAGCCACTTGCAGCCGATGACAGCGCTGAATGCATGAATGAACCCCTTCCAATTGTTGATGGCATTGAAGAAAGCCTCTGGAGCCCTTGCTTGGATTATGAATTGGATACAATGCCTGGGGCTTACTTCAGCAACTCGATGAATTTCAGTGAATGGTTCAATGATGAGGCTTTCGAAGGCGGCATGGAGTACCTATTTGAAGGGTGCTCCAGTATAACTGAAGGCGGCAACAGCATGGATAACTCAGGTGTGACAGAATACAATTTGTTTGAGGAATGCAATATGTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGATTTTTTAGATAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGTGTGTTTCTGGGTGTTGAAAATCTTGAGATATACA-GGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTCTCTGTCCAATGGCACTGCCACA-AAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGAAGA-TTCATA-TGCTTCTCCCTATGGTCCTAGTCTCCTAGAAA-CCC-AAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAATACCCACAAGGCTGATTGATTAACTAGGGAGAC-ATTTTCTCCCTTACCCTAGATTGAGCTAGTTAATTCTGATTACTCAAAAAATTGAATGCTTGAGTAGTACTATAGGTATTCCCACAAGAAAACTCTGGGTAGTTCACAGTTTTATAAGGTAATGGAGCATATGTTATACAGAAATCACAATATGTAAATCTATCTAACTTTCAGAATAAACTATACTATACATCTTGGTTGAGGC]
[+] EMBL AK112088 [CCTCCTCCTCGTCACCTCACCTGCACCTGCACCAACGCGAGAGATCATGGCGAAGAGATCGTCTCCTGATCCCGCATCATCTTCTCCATCTGCATCATCCTCGCCGTCGTCTCCTTCCTCCTCTTCCTCCGAGGATTCCTCTTCGCCCATGTCGATGCCCTGCAAGAGGAGGGCGAGGCCGAGGACGGACAAGAGCACCGGCAAGGCCAAGAGGCCCAAGAAGGAGAGCAAGGAGGTGGTTGATCCTTCTTCCAATGGCGGTGGCGGCGGCGGCGGCGGCAAGAGGAGTTCTATCTACAGGGGAGTCACCAGGTATGCGTCTCTGCATGGCATCGGTGGACTGGCAGATTTGAGGCCCATCTGTGGGACAAGAATTGCTCCACTTCACTTCAGAACAAGAAGAAAGGGAGGCAAGTCTATTTGGGGGCTTATGATAGTGAAGAGGCAGCTGCTCGTGCATATGACCTTGCAGCTCTTAAGTACTGGGGTCCTGAGACAGTGCTCAATTTCCCACTGGAGGAATATGAGAAGGAGAGGTCGGAGATGGAGGGTGTGTCGAGGGAGGAGTACCTGGCCTCCCTCCGCCGCCGGAGCAGCGGTTTCTCCAGGGGTGTCTCCAAGTACAGAGGCGTTGCCAGGCATCACCACAATGGGCGGTGGGAGGCACGGATAGGGCGGGTCCTGGGGAACAAGTACCTCTACCTGGGTACTTTCGATACTCAAGAGGAGGCAGCCAAGGCC TATGATCTTGCT GCAATTGAATACCGAGGTGCCAATGCGGTAACCAACTTCGACATCAGCTGCTACCTGGACCAGCCACAGTTACTGGCACAGCTGCAACAGGAACCACAGTTACTGGCACAACTGCAACAAGAGCTACAGGTGGTGCCAGCATTACATGAAGAGCCTCAAGATGATGACCGAAGTGAGAATGCAGTCCAAGAGCTCAGTTCCAGTGAAGCAAATACATCAAGTGACAACAATGAGCCACTTGCAGCCGATGACAGCGCTGAATGCATGAATGAACCCCTTCCAATTGTTGATGGCATTGAAGAAAGCCTCTGGAGCCCTTGCTTGGATTATGAATTGGATACAATGCCTGGGGCTTACTTCAGCAACTCGATGAATTTCAGTGAATGGTTCAATGATGAGGCTTTCGAAGGCGGCATGGAGTACCTATTTGAAGGGTGCTCCAGTATAACTGAAGGCGGCAACAGCATGGATAACTCAGGTGTGACAGAATACAATTTGTTTGAGGAATGCAATATGTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGATTTTTTAGATAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTC TGTGTGTGTTTCTGGGTGTTGAAAATCTTGAGATATACA GGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTCTCTGTCCAATGGCACTGCCACA AAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGAAGA TTCATA TGCTTCTCCCTATGGTCCTAGTCTCCTAGAAA CCCAAAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAATACCCCCAAGGCTGATTGATTAACTAGGGAGACAATTTTCTCCCTTACCCTAGATTGAGCTAGTTAATTCTGATTACTCAGAATCTTGAATGCTTGAGTAGTACTATAGGTATTCCCACAAGAAAACTCTGGGTAGTTCACAGTTTTATAAGGTAATGGAGCATATGTTATACAGAAATCACAATATGTAAATCTATCTAACTTTCAGAATAAACTATACTATACATCTTGGTTGAGGC]
[-] EMBL CA756117 [ aGATACTCAAGAGGAGGCAGCCAAGGCCTTATGATC TGCTGGCAATCGAATACCGAGGTGCCAATGCGGTAACCAACTTCGACATCAGCTGGTACCTGGACCAGCCACAGTTACTGGCACAGCTGCAACAGGAACCACAGTTATTGGCACAACTGCAACAAGAGCCACAGGTGGTGCCAGCATTACATGAAGAGCCTCAAGATGATGACCGAAGTGAGAATGCAGTCCAAGAGCTCAGTTCCAGTGAAGCAAATACATCAAGTGACAACAATGAGCCACTTGCAGCCGATGACAGCGCCGAATGCATGAATGAACCCCTTCCAATTGTTGATGGCATTGAAGAAAGCCTCTGGAGCCCTTGCTTGGATTATGAATTGGATACAATGCCTGGGGCTTACTTCAGCAACTCGATGAATTTCAGTGAATGGTTCAATGATGAGGCATTCGAAGGCGGCATGGAGTACCTATTTGAAGGGTGCTCCAGTATAACTGAAGGCGGCAACAGCATGGATAACTCAGGTATGGCAGAATACAATTTGTTTGAGGAATGCAATATGTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGA ]
[+] EMBL BI804619 [ CAACAGCATGGATAACTCAGGTGTGACAGAATAC ATTTGTTTGAGGAATGC ATATGTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGATTTTTTAGATAAGGACATTTCAATTTCAGATGGGGAGCGAATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGTGTGTTTCTGGGTGTTGAAAATCTTGAGATATACA GGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTCTCTGTCCAATGGCACTGCCACACAAGAAGC AAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGAAGA TTCATA TGCTTCTCCCTATGGTCCTAGTCTCCTAGAAA CCC AAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAATACCCACAAGGCTGATTGATTAACTAGGGAGAC ATTTTCTCCCTTACCCTAaaaaa ]
[+] EMBL BI804289 [ ATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGTGTGTTTCTGGGTGTTGAAAATCTTGAGATATACACGGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTCTCTGTCC ATGGCACTGCCACA AAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGAAGACTTCATA TGCTTCTCCCTATGGTCCTAGTCTCCTAGAAACCCC AAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAATACCCACAAGGCTGATTGATTAACTAGGGAGAC ATTTTCTCCCTTACCCTAGATTGAGCTAGTTAATTCTGATTACTCAAAAAA ]
[+] EMBL BI803906 [ ATATCTCCTCAAGC AACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGTGTGTTTCTGGGTGTTGAAAATCTTGAGATATACA GGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTCTCTGTCC ATGGCACTGCCACA AAGAAGC AAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGAAGACTTCATACTGCTTCTCCCTATGGTCCTAGTCTCCTAGAAA CCC AAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAATACCCACAAGGCTGATTGATTAACTAGGGAGAC ATTTTCTCCCTTACCCTAGCTTGAGCTAGTTAATTCTGATTACTCAAAAAA ]
consensusID : consensus_8997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[AGGGTGCTCCAGTATAACTGAAGGCGGCAACAGCATGGATAACTCAGGTATGGCAGAATACAATTTGTTTGAGGAATGCAATATTTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGACTTTTTAGACAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGCGTGTTTCTGGGTGTTGAAAATCTTGAGATATACAGGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTTTCTGTCTAATGGCACTGCCACAAAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGGAAGATTCATATGCTTCTCCCTATGGTCCTAGTCTCCTAGAAACCCAAAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAAAAAAAAAAAAAAA]
[+] EMBL CF307768 [AGGGTGCTCCAGTATAACTGAAGGCGGCAACAGCATGGATAACTCAGGTATGGCAGAATACAATTTGTTTGAGGAATGCAATATTTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGACTTTTTAGACAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGCGTGTTTCTGGGTGTTGAAAATCTTGAGATATACAGGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTTTCTGTCTAATGGCACTGCCACAAAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGGAAGATTCATATGCTTCTCCCTATGGTCCTAGTCTCCTAGAAACCCAAAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8997#0 CCTCCTCCTCGTCACCTCACCTGCACCTGCACCAACGCGAGAGATCATGGCGAAGAGATC 60
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 GTCTCCTGATCCCGCATCATCTTCTCCATCTGCATCATCCTCGCCGTCGTCTCCTTCCTC 120
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 CTCTTCCTCCGAGGATTCCTCTTCGCCCATGTCGATGCCCTGCAAGAGGAGGGCGAGGCC 180
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 GAGGACGGACAAGAGCACCGGCAAGGCCAAGAGGCCCAAGAAGGAGAGCAAGGAGGTGGT 240
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 TGATCCTTCTTCCAATGGCGGTGGCGGCGGCGGCGGCGGCAAGAGGAGTTCTATCTACAG 300
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 GGGAGTCACCAGGTATGCGTCTCTGCATGGCATCGGTGGACTGGCAGATTTGAGGCCCAT 360
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 CTGTGGGACAAGAATTGCTCCACTTCACTTCAGAACAAGAAGAAAGGGAGGCAAGTCTAT 420
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 TTGGGGGCTTATGATAGTGAAGAGGCAGCTGCTCGTGCATATGACCTTGCAGCTCTTAAG 480
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 TACTGGGGTCCTGAGACAGTGCTCAATTTCCCACTGGAGGAATATGAGAAGGAGAGGTCG 540
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 GAGATGGAGGGTGTGTCGAGGGAGGAGTACCTGGCCTCCCTCCGCCGCCGGAGCAGCGGT 600
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 TTCTCCAGGGGTGTCTCCAAGTACAGAGGCGTTGCCAGGCATCACCACAATGGGCGGTGG 660
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 GAGGCACGGATAGGGCGGGTCCTGGGGAACAAGTACCTCTACCTGGGTACTTTCGATACT 720
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 CAAGAGGAGGCAGCCAAGGCCTATGATCTTGCTGCAATTGAATACCGAGGTGCCAATGCG 780
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 GTAACCAACTTCGACATCAGCTGCTACCTGGACCAGCCACAGTTACTGGCACAGCTGCAA 840
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 CAGGAACCACAGTTACTGGCACAACTGCAACAAGAGCTACAGGTGGTGCCAGCATTACAT 900
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 GAAGAGCCTCAAGATGATGACCGAAGTGAGAATGCAGTCCAAGAGCTCAGTTCCAGTGAA 960
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 GCAAATACATCAAGTGACAACAATGAGCCACTTGCAGCCGATGACAGCGCTGAATGCATG 1020
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 AATGAACCCCTTCCAATTGTTGATGGCATTGAAGAAAGCCTCTGGAGCCCTTGCTTGGAT 1080
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 TATGAATTGGATACAATGCCTGGGGCTTACTTCAGCAACTCGATGAATTTCAGTGAATGG 1140
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 TTCAATGATGAGGCTTTCGAAGGCGGCATGGAGTACCTATTTGAAGGGTGCTCCAGTATA 1200
consensus_8997#1 --------------------------------------------AGGGTGCTCCAGTATA 16
****************
consensus_8997#0 ACTGAAGGCGGCAACAGCATGGATAACTCAGGTGTGACAGAATACAATTTGTTTGAGGAA 1260
consensus_8997#1 ACTGAAGGCGGCAACAGCATGGATAACTCAGGTATGGCAGAATACAATTTGTTTGAGGAA 76
********************************* ** ***********************
consensus_8997#0 TGCAATATGTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGATTTTTTA 1320
consensus_8997#1 TGCAATATTTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGACTTTTTA 136
******** ******************************************** ******
consensus_8997#0 GATAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCC 1380
consensus_8997#1 GACAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCC 196
** *********************************************************
consensus_8997#0 TGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGTGTGTTTCTGGGTG 1440
consensus_8997#1 TGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGCGTGTTTCTGGGTG 256
********************************************** *************
consensus_8997#0 TTGAAAATCTTGAGATATACAGGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTCTCT 1500
consensus_8997#1 TTGAAAATCTTGAGATATACAGGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTTTCT 316
******************************************************** ***
consensus_8997#0 GTCCAATGGCACTGCCACAAAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGG-A 1559
consensus_8997#1 GTCTAATGGCACTGCCACAAAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGGA 376
*** ****************************************************** *
consensus_8997#0 AGATTCATATGCTTCTCCCTATGGTCCTAGTCTCCTAGAAACCCAA-GGCATTCAACTTG 1618
consensus_8997#1 AGATTCATATGCTTCTCCCTATGGTCCTAGTCTCCTAGAAACCCAAAGGCATTCAACTTG 436
********************************************** *************
consensus_8997#0 GCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAATACCCACAAGGCTGATTGATTAACT 1678
consensus_8997#1 GCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAAAAAAAAAAAAAAA------------ 484
*********************************** * * **
consensus_8997#0 AGGGAGACATTTTCTCCCTTACCCTAGATTGAGCTAGTTAATTCTGATTACTCAAAAAAT 1738
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 TGAATGCTTGAGTAGTACTATAGGTATTCCCACAAGAAAACTCTGGGTAGTTCACAGTTT 1798
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 TATAAGGTAATGGAGCATATGTTATACAGAAATCACAATATGTAAATCTATCTAACTTTC 1858
consensus_8997#1 ------------------------------------------------------------
consensus_8997#0 AGAATAAACTATACTATACATCTTGGTTGAGGC 1891
consensus_8997#1 ---------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||