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Oryza sativa
cluster # 8998 cluster # 8998       Sequences # 6       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8998#0 length = 1814 sequences # 5  
 consensus_8998#1 length = 784 sequences # 1  
consensusID : consensus_8998#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1814
fasta sequence 
                              [CCGCCGGCCACCGGCCACCGGCCACCGTGAAACCAACGAGCAAACGGCGGCGCCTCCAGAGAGATCGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGTTCGGCCATGGAGACGAGCAGCAGCCGGGGACGGAGCGGGAGCGCGGGATTGAAGCGCCGCAGGGGCCCCGGCGGCGGCGGCGGCGGGTCGGGGTCGACGGCGCAGGCGCTGAACGACGACACCCTCCGCTCCGTCTTCTCCCGCCTCGACGACCACTTCGACCTCGCCCGCTGCTCCACCGTCTGCAACTCATGGAATAGAGTTATTGACACAGCTCATCTGATGAGGGATCTATATTACAAGAGGAATCCACAAGCAAGAAGTTCAGGGTCTAATACTTCAATAAAGAGTTACTTCAAGGAGCTTGCACTTGATGAACATGCATCGTCTTTCTCTAGAGGTCCTGCTGAAGTTTATCAGTGGATTGGTCATCCTAACCAGGCCACCATATGCCGCATGAAGAGTGGTTCAATCTTAACTGGAGTTGGAGATAAGACTCTCCGACTTTGGTCTGCTGAAAGTTGCAAATACATGAATGAGTACATTGTTCCAAGTTCTAAAATGCTGGTCAACTTTGATTTTGATGAAAATAAGATTGTAGGTTTGACTAGCTCCCAGCTTTGCATATGGAGACGTAGTGAGCCGAGAAGTATTTTTCAATCTCGTGGAGCCTCATTCAACCGTGGCTTATGTATGAGTTATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGGTAGAGCATTTGTATATGATATGTACAGCAGGAGTTGCTCAAGCATCTACCGGCTTCACTCTTCTCCCTTGACATGCTTGACAATAACAGATGACCAGCTCATTGCTGCTGGTTCTACATTTGGAAATGTAGCTATTGCAGATCAAACCTCTGGACAAAAGTTAGGTGTTCTGAAATCAGCTTTTGCACCAACAGCAATAAGATGCTTGTCATTCAGCACAAGTGGCCATTTGATATTCGCGGGCTCATCTGCTGGTTATGCGCACTGCTGGGACTTGAGGACCCTGAGGCCTCTCTGGGAAAAGAGAGTTAGCCCAAATGTCATCTACAGCGCACATCACTTGCCAGGTGACACAGCAACACTGGCAGTCGGCGGTATTGACGGTGTGCTTCGCTTGATATGCCAAAGAACCGGTGAAACCATCCGAAGTTTCATAGTTAATGCAGACCGCCCAGCAGCATCCAGTTCCCATCAGCAAGTCGAAAAGAAAAGCGTCCGCCAGGTTGCTCCAAATGCGCGGCTTGACAACATCCCCACACGCCTGCGCCCTCAGATCACTTGCCTGGCAGTAGGCATGAAGAAAATTGTGACCACACATGGCGAAAACTACATCCGTGTCTGGAAGTTTCGCCCGAAGAGTTCTTAGAATGATCATCCGGAGCCAGACACTTTGTTATGATGCTTAACGACCCCCCTTTTTGTAAAATTAGACGAAAATATGTTCTGCATCTGTCAATGCCAGATAGTATGCCATGCTGTTGTGTTGTGCAAAAATATTTGTTGTATCAGGAGTTATGTTGAATTAATCTCATACCTTTACAAATTATTGTTGGTTGTTTCAGTTCTCACAGGATACTCAAGTTGTAGGTGCACTCAAATATCAATATTAGCAGGTTCTTTTTTTCATTTTGAGTGGAGGATTAGAAGGTTCCTTAAACTGGTGGCTTGCCACACTAACAGTACGATTTCTCAAAAGACTTTTTCCTACTGCATTGTTTTGATTATATGATCATGATGTTAAGATATATGCTAAG]

[+] EMBL AK112089             [CCGCCGGCCACCGGCCACCGGCCACCGTGAAACCAACGAGCAAACGGCGGCGCCTCCAGAGAGATCGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGTTCGGCCATGGAGACGAGCAGCAGCCGGGGACGGAGCGGGAGCGCGGGATTGAAGCGCCGCAGGGGCCCCGGCGGCGGCGGCGGCGGGTCGGGGTCGACGGCGCAGGCGCTGAACGACGACACCCTCCGCTCCGTCTTCTCCCGCCTCGACGACCACTTCGACCTCGCCCGCTGCTCCACCGTCTGCAACTCATGGAATAGAGTTATTGACACAGCTCATCTGATGAGGGATCTATATTACAAGAGGAATCCACAAGCAAGAAGTTCAGGGTCTAATACTTCAATAAAGAGTTACTTCAAGGAGCTTGCACTTGATGAACATGCATCGTCTTTCTCTAGAGGTCCTGCTGAAGTTTATCAGTGGATTGGTCATCCTAACCAGGCCACCATATGCCGCATGAAGAGTGGTTCAATCTTAACTGGAGTTGGAGATAAGACTCTCCGACTTTGGTCTGCTGAAAGTTGCAAATACATGAATGAGTACATTGTTCCAAGTTCTAAAATGCTGGTCAACTTTGATTTTGATGAAAATAAGATTGTAGGTTTGACTAGCTCCCAGCTTTGCATATGGAGACGTAGTGAGCCGAGAAGTATTTTTCAATCTCGTGGAGCCTCATTCAACCGTGGCTTATGTATGAGTTATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGGTAGAGCATTTGTATATGATATGTACAGCAGGAGTTGCTCAAGCATCTACCGGCTTCACTCTTCTCCCTTGACATGCTTGACAATAACAGATGACCAGCTCATTGCTGCTGGTTCTACATTTGGAAATGTAGCTATTGCAGATCAAACCTCTGGACAAAAGTTAGGTGTTCTGAAATCAGCTTTTGCACCAACAGCAATAAGATGTTTGTCATTCAGCACAAGTGGCCATTTGATATTCGCGGGCTCATCTGCTGGTTATGCGCACTGCTGGGACTTGAGGACCCTGAGGCCTCTCTGGGAAAAGAGAGTTAGCCCAAATGTCATCTACAGCGCACATCACTTGCCAGGTGACACAGCAACACTGGCAGTCGGCGGTATTGACGGTGTGCTTCGCTTGATATGCCAAAGAACCGGTGAAACCATCCGAAGTTTCATAGTTAATGCAGACCGCCCAGCAGCATCCAGTTCCCATCAGCAAGTCGAAAAGAAAAGCGTCCGCCAGGTTGCTCCAAATGCGCGGCTTGACAACATCCCCACACGCCTGCGCCCTCAGATCACTTGCCTGGCAGTAGGCATGAAGAAAATTGTGACCACACATGGCGAAAACTACATCCGTGTCTGGAAGTTTCGCCCGAAGAGTTCTTAGAATGATCATCCGGAGCCAGACACTTTGTTATGATGCTTAACGACCCCCCTTTTTGTAAAATTAGACGAAAATATGTTCTGCATCTGTCAATGCCAGATAGTATGCCATGCTGTTGTGTTGTGCAAAAATATTTGTTGTATCAGGAGTTATGTTGAATTAATCTCATACCTTTACAAATTATTGTTGGTTGTTTCAGTTCTCACAGGATACTCAAGTTGTAGGTGCACTCAAATATCAATATTAGCAGGTTCTTTTTTTCATTTTGAGTGGAGGATTAGAAGGTTCCTTAAACTGGTGGCTTGCCACACTAACAGTACGATTTCTCAAAAGACTTTTTCCTACTGCATTGTTTTGATTATATGATCATGATGTTAAGATATATGCTAAG]
[+] EMBL CB644748             [           CGGCCACCGGCCACCGTGAAACCAACGAGCAAACGGCGGCGCCTCCAGAGAGATCGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGTTCGGCCATGGAGACGAGCAGCAGCCGGGGACGGAGCGGGAGCGCGGGATTGAAGCGCCGCAGGGGCCCCGGCGGCGGCGGCGGCGGGTCGGGGTCGACGGCGCAGGCGCTGAACGACGACACCCTCCGCTCCGTCTTCTCCCGCCTCGACGACCACTTCGACCTCGCCCGCTGCTCCACCGTCTGCAACTCATGGAATAGAGTTATTGACACAGCTCATCTGATGAGGGATCTATATTACAAGAGGAATCCACAAGCAAGAAGTTCAGGGTCTAATACTTCAATAAAGAGTTACTTCAAGGAGCTTGCACTTGATGAACATGCATCGTCTTTCTCTAGAGGTCCTGCTGAAGTTTATCAGTGGATTGGTCATCCTAACCAGGCCACCATATGCCGCATGAAGAGTGGTTCAATCTTAACTGGAGTTGGAGATAAGACTCTCCGACTTTGGTCTGCTGAAAGTTGCAAATACATGAATGAGTACATTGTTCCAAGTTCTAAAATGCTGGTCAACTTTGATTTTGATGAAAATAAGATTGTAGGTTTGACTAGCTCCCAGCTTTGCATATGGAGACGTAGTGAGCCGAGAAGTATTTTTCAATCTCGTGGAGCCTCATTCAACCGTGGCTTATGTATGAGTTATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGGTAGAGCATTTGTATATGATATGTACAGCAGGAGTTGCTCAAGCATCTACCGGCTTCACTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB663553             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GAGATAAGACTCTCCGACTTTGGTCTGCTGAAAGTTGCAAATACATGAATGAGTACATTGTTCCAAGTTCTAAAATGCTGGTCAACTTTGATTTTGATGAAAATAAGATTGTAGGTTTGACTAGCTCCCAGCTTTGCATATGGAGACGTAGTGAGCCGAGAAGTATTTTTCAATCTCGTGGAGCCTCATTCAACCGTGGCTTATGTATGAGTTATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGGTAGAGCATTTGTATATGATATGTACAGCAGGAGTTGCTCAAGCATCTACCGGCTTCACTCTTCTCCCTTGACATGCTTGACAATAACAGATGACCAGCTCATTGCTGCTGGTTCTACATTTGGAAATGTAGCTATTGCAGATCAAACCTCTGGACAAAAGTTAGGTGTTCTGAAATCAGCTTTTGCACCAACAGCAATAAGATGCTTGTCATTCAGCACAAGTGGCCATTTGATATTCGCGGGCTCATCTGCTGGTTATGCGCACTGCTGGGACTTGAGGACCCTGAGGCCTCTCTGGGAAAAGAGAGTTAGCCCAAATGTCATCTACAGCGCACATCACTTGCCAGGTGACACAGCAACACTGGCAGTCGGCGGTATTGACGGTGTGCTTCGCTTGATATGCCAAAGAACCGGTGAAACCATCCGAAGTTTCATAGTTAATGCAGACCGCCCAGCAGCATCCAGTTCCCATCAGCAAGTCGAAAAGAAAAGCGTCCGCCAGGTTGCTCCAAATGCGCGGCTTGACAACATCCCCACACGCCTGCGCCCTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB663554             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGTAGCTATTGCAGATCAAACCTCTGGACAAAAGTTAGGTGTTCTGAAATCAGCTTTTGCACCAACAGCAATAAGATGCTTGTCATTCAGCACAAGTGGCCATTTGATATTCGCGGGCTCATCTGCTGGTTATGCGCACTGCTGGGACTTGAGGACCCTGAGGCCTCTCTGGGAAAAGAGAGTTAGCCCAAATGTCATCTACAGCGCACATCACTTGCCAGGTGACACAGCAACACTGGCAGTCGGCGGTATTGACGGTGTGCTTCGCTTGATATGCCAAAGAACCGGTGAAACCATCCGAAGTTTCATAGTTAATGCAGACCGCCCAGCAGCATCCAGTTCCCATCAGCAAGTCGAAAAGAAAAGCGTCCGCCAGGTTGCTCCAAATGCGCGGCTTGACAACATCCCCACACGCCTGCGCCCTCAGATCACTTGCCTGGCAGTAGGCATGAAGAAAATTGTGACCACACATGGCGAAAACTACATCCGTGTCTGGAAGTTTCGCCCGAAGAGTTCTTAGAATGATCATCCGGAGCCAGACACTTTGTTATGATGCTTAACGACCCCCCTTTTTGTAAAATTAGACGAAAATATGTTCTGCATCTGTCAATGCCAGATAGTATGCCATGCTGTTGTGTTGTGCAAAAATATTTGTTGTATCAGGAGTTATGTTGAATTAATCTCATACCTTTACAAATTATTGTTGGTTGTTTCAGTTCTCACAGGATACTCAAGTTGTAGGTGCACTCAAATATCAATATTAGCAGGTT                                                                                                                                          ]
[-] EMBL CB644749             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGCGGGCTCATCTGCTGGTTATGCGCACTGCTGGGACTTGAGGACCCTGAGGCCTCTCTGGGAAAAGAGAGTTAGCCCAAATGTCATCTACAGCGCACATCACTTGCCAGGTGACACAGCAACACTGGCAGTCGGCGGTATTGACGGTGTGCTTCGCTTGATATGCCAAAGAACCGGTGAAACCATCCGAAGTTTCATAGTTAATGCAGACCGCCCAGCAGCATCCAGTTCCCATCAGCAAGTCGAAAAGAAAAGCGTCCGCCAGGTTGCTCCAAATGCGCGGCTTGACAACATCCCCACACGCCTGCGCCCTCAGATCACTTGCCTGGCAGTAGGCATGAAGAAAATTGTGACCACACATGGCGAAAACTACATCCGTGTCTGGAAGTTTCGCCCGAAGAGTTCTTAGAATGATCATCCGGAGCCAGACACTTTGTTATGATGCTTAACGACCCCCCTTTTTGTAAAATTAGACGAAAATATGTTCTGCATCTGTCAATGCCAGATAGTATGCCATGCTGTTGTGTTGTGCAAAAATATTTGTTGTATCAGGAGTTATGTTGAATTAATCTCATACCTTTACAAATTATTGTTGGTTGTTTCAGTTCTCACAGGATACTCAAGTTGTAGGTGCACTCAAATATCAATATTAGCAGGTTCTTTTTTTCATTTTGAGTGGAGGATTAGAAGGTTCCTTAAACTGGTGGCTTGCCACAGTAACAGTACGATTTCTCAAAAGACTTTTTCCTAaataaaaga                                      ]




>consensus_8998#0
CCGCCGGCCACCGGCCACCGGCCACCGTGAAACCAACGAGCAAACGGCGGCGCCTCCAGA
GAGATCGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGTTCGGCCATGGAGACGAG
CAGCAGCCGGGGACGGAGCGGGAGCGCGGGATTGAAGCGCCGCAGGGGCCCCGGCGGCGG
CGGCGGCGGGTCGGGGTCGACGGCGCAGGCGCTGAACGACGACACCCTCCGCTCCGTCTT
CTCCCGCCTCGACGACCACTTCGACCTCGCCCGCTGCTCCACCGTCTGCAACTCATGGAA
TAGAGTTATTGACACAGCTCATCTGATGAGGGATCTATATTACAAGAGGAATCCACAAGC
AAGAAGTTCAGGGTCTAATACTTCAATAAAGAGTTACTTCAAGGAGCTTGCACTTGATGA
ACATGCATCGTCTTTCTCTAGAGGTCCTGCTGAAGTTTATCAGTGGATTGGTCATCCTAA
CCAGGCCACCATATGCCGCATGAAGAGTGGTTCAATCTTAACTGGAGTTGGAGATAAGAC
TCTCCGACTTTGGTCTGCTGAAAGTTGCAAATACATGAATGAGTACATTGTTCCAAGTTC
TAAAATGCTGGTCAACTTTGATTTTGATGAAAATAAGATTGTAGGTTTGACTAGCTCCCA
GCTTTGCATATGGAGACGTAGTGAGCCGAGAAGTATTTTTCAATCTCGTGGAGCCTCATT
CAACCGTGGCTTATGTATGAGTTATGCCGATCCAGAGGTTATAATTGGTTGTGAGGATGG
TAGAGCATTTGTATATGATATGTACAGCAGGAGTTGCTCAAGCATCTACCGGCTTCACTC
TTCTCCCTTGACATGCTTGACAATAACAGATGACCAGCTCATTGCTGCTGGTTCTACATT
TGGAAATGTAGCTATTGCAGATCAAACCTCTGGACAAAAGTTAGGTGTTCTGAAATCAGC
TTTTGCACCAACAGCAATAAGATGCTTGTCATTCAGCACAAGTGGCCATTTGATATTCGC
GGGCTCATCTGCTGGTTATGCGCACTGCTGGGACTTGAGGACCCTGAGGCCTCTCTGGGA
AAAGAGAGTTAGCCCAAATGTCATCTACAGCGCACATCACTTGCCAGGTGACACAGCAAC
ACTGGCAGTCGGCGGTATTGACGGTGTGCTTCGCTTGATATGCCAAAGAACCGGTGAAAC
CATCCGAAGTTTCATAGTTAATGCAGACCGCCCAGCAGCATCCAGTTCCCATCAGCAAGT
CGAAAAGAAAAGCGTCCGCCAGGTTGCTCCAAATGCGCGGCTTGACAACATCCCCACACG
CCTGCGCCCTCAGATCACTTGCCTGGCAGTAGGCATGAAGAAAATTGTGACCACACATGG
CGAAAACTACATCCGTGTCTGGAAGTTTCGCCCGAAGAGTTCTTAGAATGATCATCCGGA
GCCAGACACTTTGTTATGATGCTTAACGACCCCCCTTTTTGTAAAATTAGACGAAAATAT
GTTCTGCATCTGTCAATGCCAGATAGTATGCCATGCTGTTGTGTTGTGCAAAAATATTTG
TTGTATCAGGAGTTATGTTGAATTAATCTCATACCTTTACAAATTATTGTTGGTTGTTTC
AGTTCTCACAGGATACTCAAGTTGTAGGTGCACTCAAATATCAATATTAGCAGGTTCTTT
TTTTCATTTTGAGTGGAGGATTAGAAGGTTCCTTAAACTGGTGGCTTGCCACACTAACAG
TACGATTTCTCAAAAGACTTTTTCCTACTGCATTGTTTTGATTATATGATCATGATGTTA
AGATATATGCTAAG

consensusID : consensus_8998#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 784
fasta sequence 
                              [AGGGGTTCTAATTGGTTGTGAGGATGGTAGAGCATTTGTATATGATATGTACAGCAGGAGTTGTTCAGGCATCTACCGGTGAGTACACTGAAACATAACATATGAATACGGTTCCTTTCAGTTGTTTGATTCTTATCATCAAACTGCAATATAAGCTTTAGTTCACTTCTGAGGAATTATATAATTTGATATAAGTATATAACCTTACCTAATAACCATTTCAGCTGGTATAATTTCGTCTTGTTTATCAATGCATGTCTGCACCTCATGAAGTTTTTTCCCCTTGAATGTTTTACATAGTTTTAAAGTCAAATGAGATTGTGCTGAGGTTTAGAAGGAAGATTCTAAAGGTGTATCTAATTTGATATTTATATGGGCCTCCAGTGGATGCAGAAAAGTTGAGAAGCAACACTTATTTGGATACAATTGATCTTTGAGAATGACATAGTGTACATATTTAAGAAATTTTTGAAGGATGAATAATTACAAATGCAGAAAAAAAGAGACAATTTTGCCCCTGTGATGTACAGTTCTGCATTCTATATTAGTATGTCCTGCAGCTGATGCCTATTTAACTGTGTTATACAGGCTTCACTCTTCTCCCTTGACATGCTTGACAATAACAGATGACCAGCTCATTGCTGCTGGTTCTACATTTGGGAAATGTAGCTATTGCAGATCAAACCTCTGGACAAAAGTTAGGTGTTCTGAAATCAGCTTTTGCACCAACAGGTAACCAACCCCTCAGCTGATCCTGAATAAGCATGATGGACTGNCAATTGCT]

[+] EMBL CA766090             [AGGGGTTCTAATTGGTTGTGAGGATGGTAGAGCATTTGTATATGATATGTACAGCAGGAGTTGTTCAGGCATCTACCGGTGAGTACACTGAAACATAACATATGAATACGGTTCCTTTCAGTTGTTTGATTCTTATCATCAAACTGCAATATAAGCTTTAGTTCACTTCTGAGGAATTATATAATTTGATATAAGTATATAACCTTACCTAATAACCATTTCAGCTGGTATAATTTCGTCTTGTTTATCAATGCATGTCTGCACCTCATGAAGTTTTTTCCCCTTGAATGTTTTACATAGTTTTAAAGTCAAATGAGATTGTGCTGAGGTTTAGAAGGAAGATTCTAAAGGTGTATCTAATTTGATATTTATATGGGCCTCCAGTGGATGCAGAAAAGTTGAGAAGCAACACTTATTTGGATACAATTGATCTTTGAGAATGACATAGTGTACATATTTAAGAAATTTTTGAAGGATGAATAATTACAAATGCAGAAAAAAAGAGACAATTTTGCCCCTGTGATGTACAGTTCTGCATTCTATATTAGTATGTCCTGCAGCTGATGCCTATTTAACTGTGTTATACAGGCTTCACTCTTCTCCCTTGACATGCTTGACAATAACAGATGACCAGCTCATTGCTGCTGGTTCTACATTTGGGAAATGTAGCTATTGCAGATCAAACCTCTGGACAAAAGTTAGGTGTTCTGAAATCAGCTTTTGCACCAACAGGTAACCAACCCCTCAGCTGATCCTGAATAAGCATGATGGACTGNCAATTGCT]




>consensus_8998#1
AGGGGTTCTAATTGGTTGTGAGGATGGTAGAGCATTTGTATATGATATGTACAGCAGGAG
TTGTTCAGGCATCTACCGGTGAGTACACTGAAACATAACATATGAATACGGTTCCTTTCA
GTTGTTTGATTCTTATCATCAAACTGCAATATAAGCTTTAGTTCACTTCTGAGGAATTAT
ATAATTTGATATAAGTATATAACCTTACCTAATAACCATTTCAGCTGGTATAATTTCGTC
TTGTTTATCAATGCATGTCTGCACCTCATGAAGTTTTTTCCCCTTGAATGTTTTACATAG
TTTTAAAGTCAAATGAGATTGTGCTGAGGTTTAGAAGGAAGATTCTAAAGGTGTATCTAA
TTTGATATTTATATGGGCCTCCAGTGGATGCAGAAAAGTTGAGAAGCAACACTTATTTGG
ATACAATTGATCTTTGAGAATGACATAGTGTACATATTTAAGAAATTTTTGAAGGATGAA
TAATTACAAATGCAGAAAAAAAGAGACAATTTTGCCCCTGTGATGTACAGTTCTGCATTC
TATATTAGTATGTCCTGCAGCTGATGCCTATTTAACTGTGTTATACAGGCTTCACTCTTC
TCCCTTGACATGCTTGACAATAACAGATGACCAGCTCATTGCTGCTGGTTCTACATTTGG
GAAATGTAGCTATTGCAGATCAAACCTCTGGACAAAAGTTAGGTGTTCTGAAATCAGCTT
TTGCACCAACAGGTAACCAACCCCTCAGCTGATCCTGAATAAGCATGATGGACTGNCAAT
TGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8998#0      CCGCCGGCCACCGGCCACCGGCCACCGTGAAACCAACGAGCAAACGGCGGCGCCTCCAGA 60
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      GAGATCGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGTTCGGCCATGGAGACGAG 120
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      CAGCAGCCGGGGACGGAGCGGGAGCGCGGGATTGAAGCGCCGCAGGGGCCCCGGCGGCGG 180
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      CGGCGGCGGGTCGGGGTCGACGGCGCAGGCGCTGAACGACGACACCCTCCGCTCCGTCTT 240
consensus_8998#1      -----AGGGGTTCTAATTGGTTGTGAGGATGGTAGA-------GCATTTGTATATGATAT 48
                             ****     * *   * *  *  * *  *        *  *    *  *   *

consensus_8998#0      CTCCCGCCTCGACGACCACTTCGACCTCGCCCGCTGC-TCCACCGTC-TGCAACTCATGG 298
consensus_8998#1      GTACAGC---AGGAGTTGTTCAGGCATCTACCGGTGAGTACACTGAAACATAACATATG- 104
                       * * **            *  * * **  *** **  * *** *      ***  *** 

consensus_8998#0      AATAGAGTTATTGACA-CAGCTCA--TCTGATGAGGGATCTATATTACAAGAGG-AATCC 354
consensus_8998#1      AATACGGTTCCTTTCAGTTGTTTGATTCTTATCATCAAACTGCAATATAAGCTTTAGTTC 164
                      ****  ***  *  **   * *    *** ** *   * **  * ** ***    * * *

consensus_8998#0      ACAAGCAAGAAGTT-CAGGGTCTAATACTTCAATAAAGAGTTACTTCAAGGAGCTTGCAC 413
consensus_8998#1      ACTTCTGAGGAATTATATAATTTGATATAAGTATATAACCTTACCTAATAACCATTTCAG 224
                      **     ** * **  *   * * ***     *** *   **** * *      ** ** 

consensus_8998#0      TTGATGAACATGCATCGTCTTTCTCTAGAGGTCCTGCTGAAGTTTATCAGTGGATTGGTC 473
consensus_8998#1      CTGGTATAATTTCGTCTTGTTTATC--AATGCATGTCTGCACCTCATGAA--GTTTTTTC 280
                       ** *  *  * * ** * *** **   * *     *** *  * ** *   * **  **

consensus_8998#0      ATCCTAACCAGGCCACCATATGCCGCATGAAGAGTGGTTCAATCTTAACTGGAGTTGGAG 533
consensus_8998#1      CCCTTGAATGTTTTAC-ATAGTTT---TAAAGTCAAATGAGATTGTGCTGAGGTTTAGAA 336
                        * * *       ** ***       * ***     *   **  *     *  ** ** 

consensus_8998#0      ATAAGACTCTCCGACTTTGGTCTGCTGAAAGTTGCAAATACATGAATGAGTACATTGTTC 593
consensus_8998#1      GGAAGATTCTAAA-----GGTGTATCTAATTTGATATTTATATGGGCCTCCA-GTGGATG 390
                        **** ***        *** *    **  *   *  ** ***       *  * * * 

consensus_8998#0      CAAGTTCTAAAATGCTGGTCAACTTTGATTTTGATGAAAATAAGATTGTAGGTTTGACTA 653
consensus_8998#1      CAGAA---AAGTTGAGAAGCAACACTTATTTGGATACAATTGATCTTTGAGAATGACATA 447
                      **      **  **     ****  * **** ***  ** * *  **  **  *    **

consensus_8998#0      GCTCCCAGCTTTGCATATGGAGACGTAGTGAGCCGAGAAGTATTTTTCAATCTCGTGGAG 713
consensus_8998#1      GTGTACATATTT-------AAGAAATTTTTGAAGGATGAATAATTACAAATGCAGAAAAA 500
                      *    **  ***        ***  *  *     **  * ** **   ***   *   * 

consensus_8998#0      CCTCATTCAACCGTGGCTTATGTATGAGTTATGCCGATCCAGAGGTTATAATTGGTTGTG 773
consensus_8998#1      ----AAGAGACAAT--TTTGCCCCTGTGATGTACAGTTCTGCATTCTATATTAGTATGT- 553
                          *    **  *   **     ** * * * * * **   *   **** * *  *** 

consensus_8998#0      AGGATGGTAGAGCATTTGTATATGATATGTACAGCAGGAGTTGCTCAAGCATCTACCGGC 833
consensus_8998#1      --------------CCTGCAGCTGATGCCTAT--------TTAACTGTGT-TATACAGGC 590
                                      ** *  ****   **         **      *  * *** ***

consensus_8998#0      TTCACTCTTCTCCCTTGACATGCTTGACAATAACAGATGACCAGCTCATTGCTGCTGGTT 893
consensus_8998#1      TTCACTCTTCTCCCTTGACATGCTTGACAATAACAGATGACCAGCTCATTGCTGCTGGTT 650
                      ************************************************************

consensus_8998#0      CTACATTTGG-AAATGTAGCTATTGCAGATCAAACCTCTGGACAAAAGTTAGGTGTTCTG 952
consensus_8998#1      CTACATTTGGGAAATGTAGCTATTGCAGATCAAACCTCTGGACAAAAGTTAGGTGTTCTG 710
                      ********** *************************************************

consensus_8998#0      AAATCAGCTTTTGCACCAACAG-CAATAAGATGCTTGTC--ATTCAGCACAAG--TGGCC 1007
consensus_8998#1      AAATCAGCTTTTGCACCAACAGGTAACCAACCCCTCAGCTGATCCTGAATAAGCATGATG 770
                      **********************  **  *    **   *  ** * * * ***  **   

consensus_8998#0      ATTTGATATTCGCGGGCTCATCTGCTGGTTATGCGCACTGCTGGGACTTGAGGACCCTGA 1067
consensus_8998#1      GACTGNCAATTGCT---------------------------------------------- 784
                         **  * * **                                               

consensus_8998#0      GGCCTCTCTGGGAAAAGAGAGTTAGCCCAAATGTCATCTACAGCGCACATCACTTGCCAG 1127
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      GTGACACAGCAACACTGGCAGTCGGCGGTATTGACGGTGTGCTTCGCTTGATATGCCAAA 1187
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      GAACCGGTGAAACCATCCGAAGTTTCATAGTTAATGCAGACCGCCCAGCAGCATCCAGTT 1247
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      CCCATCAGCAAGTCGAAAAGAAAAGCGTCCGCCAGGTTGCTCCAAATGCGCGGCTTGACA 1307
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      ACATCCCCACACGCCTGCGCCCTCAGATCACTTGCCTGGCAGTAGGCATGAAGAAAATTG 1367
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      TGACCACACATGGCGAAAACTACATCCGTGTCTGGAAGTTTCGCCCGAAGAGTTCTTAGA 1427
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      ATGATCATCCGGAGCCAGACACTTTGTTATGATGCTTAACGACCCCCCTTTTTGTAAAAT 1487
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      TAGACGAAAATATGTTCTGCATCTGTCAATGCCAGATAGTATGCCATGCTGTTGTGTTGT 1547
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      GCAAAAATATTTGTTGTATCAGGAGTTATGTTGAATTAATCTCATACCTTTACAAATTAT 1607
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      TGTTGGTTGTTTCAGTTCTCACAGGATACTCAAGTTGTAGGTGCACTCAAATATCAATAT 1667
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      TAGCAGGTTCTTTTTTTCATTTTGAGTGGAGGATTAGAAGGTTCCTTAAACTGGTGGCTT 1727
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      GCCACACTAACAGTACGATTTCTCAAAAGACTTTTTCCTACTGCATTGTTTTGATTATAT 1787
consensus_8998#1      ------------------------------------------------------------
                                                                                  

consensus_8998#0      GATCATGATGTTAAGATATATGCTAAG 1814
consensus_8998#1      ---------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)