cluster # 9013

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Oryza sativa
cluster # 9013 cluster # 9013 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9013#0 length = 2682 sequences # 1
consensus_9013#1 length = 903 sequences # 2

consensus_9013#2 length = 805 sequences # 2
consensus_9013#3 length = 113 sequences # 1

consensusID : consensus_9013#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2682
fasta sequence

                              [TGGTATTATTTTCTATAGTGACAACCTGTACTAATTACAGATCTAATATTGTGCCTCAACCTCACATGTTGAATATGTTGGCTTACGTCAGTTAGACCTCTACGTAGAAAGCATCAATGGTTGTGAGGCCTACTGATTTCTCTCTCACTCTAAGTCCGAGAAAAATATTGTCGTGTTGATGCTACTTCCAAATTTGAGCATACTAAGATGCACTGATGAACATGGTACTGTTACATTACTCTAAGATGTGATTTCAGGCTCATGGTTCTTCGTATGGTATAAGTTGCAGGTATTGAAGTGCTGGGCTGGAAATTCTCACAAATGCTAGGTATGTGGGCACTCCAGAACATGGGTTTTAGCATAGCGTCCGGATAACATTTTTCCAATGTTTATTTGCCTAAAAGTGATCTTTAATTACTTGTATAGTTTTTACCGCCCCTTGTATATTGTGTGGGTTATGATTACATCTTTTCAATTCGCATGTGTTACATGTGCTCCCTTAGAATGGTTTTTAATTTCTTGTAGTTTCTGCAGGGCTAAATCACATGTGTGCCCCTGGAAAGCATTTTCAGCTGTTTGAATCTTGCTTTTTCTCATCTTAATGAACGTCTGCATTTAATTTTTTTTTAGGCATTCATGCTTCCACACAACGGTTGTGCATTTTCCCTGACTTGTTTGATTGCAGGACACCCAGCAGCACTGCCACAACAAGTCAGCAATCAAAGTCTCCATGCGCATGTGCATGCTGGTAACCTCTACCACTATGTGCATACATAATAAATTAAATTTACTTTTGCCACTTGAAACCTATAAACACAGGCAACTATTTTTTTTCTTTTTCATTTCCAAAGGTTTGTTTCAGTGTTAACCTTGGTATTTTTTTTCCTATCAAACTATCCAAGCTGAATGAGTGCAAGGATATTTTTGAGGCTTTGTACAAATTATTTATGATCTACGCACCTACTTGAAGCCACATGTAAGAATCTTGAACTTTTTTAAACCACTCATTTAATTTTTATTTTTGGCTATAACATTGATATAACCTTTTGTTGTATAGATTGCCATTCTTGATAGTGTGACCATGAGTGGTATAGCCGAGATGTTTCCACTCCTATAACATTTTACATTGCCACTAAAAACAATGTGATTGATCAGTTAATAGGTGCAACCTTGGATGAGAAAAATACTTTTTGGATTTTCTCCTGATCTGTTTTGTCATAATTGTCATGTTAACCTTTGAAATCTAATCTTGGGATGGAGAGTTAATGGCTTGTATGGTAGGATGTGTTGCTGCTCGTGTGCACACTACACAGTAGGTGGGGGGTGTGAAGGGGTCATATATTTTTGTCTGGTAGCTTTGCTCGTGGGCCACAAAACACCTCTTGTCATTGCTTCTGTTGATGCATATGCTACTGCAAACAGCTATGATTATGTTCAGGCTGTGATTTGTTAGTGGACAGTTGCCCCTGTCCAAACGGGTCCTCTGAATGTCCAAAATTTCTTTTACTGTTTTGTTGAGCCTTTTTATTTGTGGGATGGGATTTATATCTAGGTAATATTAACTACCACAATGTATTGGTTGCTAGCTGTTGGGGAGTATTTTTCATCTGTCAGTCAGTGGAACTCAGGTCTGCAGTAAGTTTGTTCATGATTGAGAGCATATAGCTTATATCTCACCCAGCTGCTGACTTCAGGCAGATAGAAACAATTACACTTTTTTTGTGGTATCTGTGTAACATACTGCTATCCCCTCTGTTTTTGTCTGGTAGCTTTGCTGCCCATTTTTAGATCTATCTTGCTTGTCATGTTTTCTCTACTTTATTTTTTAACAACACTTTGCAATGCGTTCCGTTTTGGCAATTATATGATATATATTTTTCTGCTTATTAATCTTAACAGGTTGAAATTAATATATTGATGTTGTATCATCACAGAGGCGGTCTTTCTTAGTCTTCAATATTTTCTTAGAGCTAAACGGTTATATTTTTTTTGGTGTCTACTTAGCAACAATGCCATCTCTTCAGTTATTGCAACTGACAGAGCATGGACACAACCTTTTGTCTTTGAGAAGGTGTGCTGTTTTAACATTATATTTCTAAATTTTAGTAAGCCGATCATTTAGTTCTTATCTCATGTTCCTTATTCTTTACAAATATCAACATGAGAGCTCTTGCAGTTGTTTCTGGTGTATTACTTGCGGGTGGAACTTTAGCGTATGCTCAGTCAGCTCGGCGCCAAAAATGTCAGGAAGAATATTCTCATAGTGATGCAAATACATAGACCACGAGTAATCAGATCATTTGTCAAAATGGTGTTGATGGTAAATTGGTAAAATCAAGGAAAAAGAAAGATGGCTCCTCCCATTGAATTCAAGTGTTGAAATATGTGATTCAAGTATTCTGATTGAATACTTAAATTCAAGTATTCAAAGGTCTTACCAACATGTTATCTGAAAGAGCACTGAATCTAAACCATAGAACTTTATCATTTGAAGGTTGTTCAAGTTACTATGAGACCTGCCAAGCAATCTGCGCTGGTGCTACAAGATTGCATATCCACATGTTTATGTAGTTCACATTTGTTTCCCAAGTGGTGAAGATATTCAAATCTATATGTCGTTACTACACAGAATTGTTCAAGTCAGTAGTGTAAAACTAGCTAATTATATTCAACCAGCTTCAA]

[+] EMBL AK120084             [TGGTATTATTTTCTATAGTGACAACCTGTACTAATTACAGATCTAATATTGTGCCTCAACCTCACATGTTGAATATGTTGGCTTACGTCAGTTAGACCTCTACGTAGAAAGCATCAATGGTTGTGAGGCCTACTGATTTCTCTCTCACTCTAAGTCCGAGAAAAATATTGTCGTGTTGATGCTACTTCCAAATTTGAGCATACTAAGATGCACTGATGAACATGGTACTGTTACATTACTCTAAGATGTGATTTCAGGCTCATGGTTCTTCGTATGGTATAAGTTGCAGGTATTGAAGTGCTGGGCTGGAAATTCTCACAAATGCTAGGTATGTGGGCACTCCAGAACATGGGTTTTAGCATAGCGTCCGGATAACATTTTTCCAATGTTTATTTGCCTAAAAGTGATCTTTAATTACTTGTATAGTTTTTACCGCCCCTTGTATATTGTGTGGGTTATGATTACATCTTTTCAATTCGCATGTGTTACATGTGCTCCCTTAGAATGGTTTTTAATTTCTTGTAGTTTCTGCAGGGCTAAATCACATGTGTGCCCCTGGAAAGCATTTTCAGCTGTTTGAATCTTGCTTTTTCTCATCTTAATGAACGTCTGCATTTAATTTTTTTTTAGGCATTCATGCTTCCACACAACGGTTGTGCATTTTCCCTGACTTGTTTGATTGCAGGACACCCAGCAGCACTGCCACAACAAGTCAGCAATCAAAGTCTCCATGCGCATGTGCATGCTGGTAACCTCTACCACTATGTGCATACATAATAAATTAAATTTACTTTTGCCACTTGAAACCTATAAACACAGGCAACTATTTTTTTTCTTTTTCATTTCCAAAGGTTTGTTTCAGTGTTAACCTTGGTATTTTTTTTCCTATCAAACTATCCAAGCTGAATGAGTGCAAGGATATTTTTGAGGCTTTGTACAAATTATTTATGATCTACGCACCTACTTGAAGCCACATGTAAGAATCTTGAACTTTTTTAAACCACTCATTTAATTTTTATTTTTGGCTATAACATTGATATAACCTTTTGTTGTATAGATTGCCATTCTTGATAGTGTGACCATGAGTGGTATAGCCGAGATGTTTCCACTCCTATAACATTTTACATTGCCACTAAAAACAATGTGATTGATCAGTTAATAGGTGCAACCTTGGATGAGAAAAATACTTTTTGGATTTTCTCCTGATCTGTTTTGTCATAATTGTCATGTTAACCTTTGAAATCTAATCTTGGGATGGAGAGTTAATGGCTTGTATGGTAGGATGTGTTGCTGCTCGTGTGCACACTACACAGTAGGTGGGGGGTGTGAAGGGGTCATATATTTTTGTCTGGTAGCTTTGCTCGTGGGCCACAAAACACCTCTTGTCATTGCTTCTGTTGATGCATATGCTACTGCAAACAGCTATGATTATGTTCAGGCTGTGATTTGTTAGTGGACAGTTGCCCCTGTCCAAACGGGTCCTCTGAATGTCCAAAATTTCTTTTACTGTTTTGTTGAGCCTTTTTATTTGTGGGATGGGATTTATATCTAGGTAATATTAACTACCACAATGTATTGGTTGCTAGCTGTTGGGGAGTATTTTTCATCTGTCAGTCAGTGGAACTCAGGTCTGCAGTAAGTTTGTTCATGATTGAGAGCATATAGCTTATATCTCACCCAGCTGCTGACTTCAGGCAGATAGAAACAATTACACTTTTTTTGTGGTATCTGTGTAACATACTGCTATCCCCTCTGTTTTTGTCTGGTAGCTTTGCTGCCCATTTTTAGATCTATCTTGCTTGTCATGTTTTCTCTACTTTATTTTTTAACAACACTTTGCAATGCGTTCCGTTTTGGCAATTATATGATATATATTTTTCTGCTTATTAATCTTAACAGGTTGAAATTAATATATTGATGTTGTATCATCACAGAGGCGGTCTTTCTTAGTCTTCAATATTTTCTTAGAGCTAAACGGTTATATTTTTTTTGGTGTCTACTTAGCAACAATGCCATCTCTTCAGTTATTGCAACTGACAGAGCATGGACACAACCTTTTGTCTTTGAGAAGGTGTGCTGTTTTAACATTATATTTCTAAATTTTAGTAAGCCGATCATTTAGTTCTTATCTCATGTTCCTTATTCTTTACAAATATCAACATGAGAGCTCTTGCAGTTGTTTCTGGTGTATTACTTGCGGGTGGAACTTTAGCGTATGCTCAGTCAGCTCGGCGCCAAAAATGTCAGGAAGAATATTCTCATAGTGATGCAAATACATAGACCACGAGTAATCAGATCATTTGTCAAAATGGTGTTGATGGTAAATTGGTAAAATCAAGGAAAAAGAAAGATGGCTCCTCCCATTGAATTCAAGTGTTGAAATATGTGATTCAAGTATTCTGATTGAATACTTAAATTCAAGTATTCAAAGGTCTTACCAACATGTTATCTGAAAGAGCACTGAATCTAAACCATAGAACTTTATCATTTGAAGGTTGTTCAAGTTACTATGAGACCTGCCAAGCAATCTGCGCTGGTGCTACAAGATTGCATATCCACATGTTTATGTAGTTCACATTTGTTTCCCAAGTGGTGAAGATATTCAAATCTATATGTCGTTACTACACAGAATTGTTCAAGTCAGTAGTGTAAAACTAGCTAATTATATTCAACCAGCTTCAA]




>consensus_9013#0
TGGTATTATTTTCTATAGTGACAACCTGTACTAATTACAGATCTAATATTGTGCCTCAAC
CTCACATGTTGAATATGTTGGCTTACGTCAGTTAGACCTCTACGTAGAAAGCATCAATGG
TTGTGAGGCCTACTGATTTCTCTCTCACTCTAAGTCCGAGAAAAATATTGTCGTGTTGAT
GCTACTTCCAAATTTGAGCATACTAAGATGCACTGATGAACATGGTACTGTTACATTACT
CTAAGATGTGATTTCAGGCTCATGGTTCTTCGTATGGTATAAGTTGCAGGTATTGAAGTG
CTGGGCTGGAAATTCTCACAAATGCTAGGTATGTGGGCACTCCAGAACATGGGTTTTAGC
ATAGCGTCCGGATAACATTTTTCCAATGTTTATTTGCCTAAAAGTGATCTTTAATTACTT
GTATAGTTTTTACCGCCCCTTGTATATTGTGTGGGTTATGATTACATCTTTTCAATTCGC
ATGTGTTACATGTGCTCCCTTAGAATGGTTTTTAATTTCTTGTAGTTTCTGCAGGGCTAA
ATCACATGTGTGCCCCTGGAAAGCATTTTCAGCTGTTTGAATCTTGCTTTTTCTCATCTT
AATGAACGTCTGCATTTAATTTTTTTTTAGGCATTCATGCTTCCACACAACGGTTGTGCA
TTTTCCCTGACTTGTTTGATTGCAGGACACCCAGCAGCACTGCCACAACAAGTCAGCAAT
CAAAGTCTCCATGCGCATGTGCATGCTGGTAACCTCTACCACTATGTGCATACATAATAA
ATTAAATTTACTTTTGCCACTTGAAACCTATAAACACAGGCAACTATTTTTTTTCTTTTT
CATTTCCAAAGGTTTGTTTCAGTGTTAACCTTGGTATTTTTTTTCCTATCAAACTATCCA
AGCTGAATGAGTGCAAGGATATTTTTGAGGCTTTGTACAAATTATTTATGATCTACGCAC
CTACTTGAAGCCACATGTAAGAATCTTGAACTTTTTTAAACCACTCATTTAATTTTTATT
TTTGGCTATAACATTGATATAACCTTTTGTTGTATAGATTGCCATTCTTGATAGTGTGAC
CATGAGTGGTATAGCCGAGATGTTTCCACTCCTATAACATTTTACATTGCCACTAAAAAC
AATGTGATTGATCAGTTAATAGGTGCAACCTTGGATGAGAAAAATACTTTTTGGATTTTC
TCCTGATCTGTTTTGTCATAATTGTCATGTTAACCTTTGAAATCTAATCTTGGGATGGAG
AGTTAATGGCTTGTATGGTAGGATGTGTTGCTGCTCGTGTGCACACTACACAGTAGGTGG
GGGGTGTGAAGGGGTCATATATTTTTGTCTGGTAGCTTTGCTCGTGGGCCACAAAACACC
TCTTGTCATTGCTTCTGTTGATGCATATGCTACTGCAAACAGCTATGATTATGTTCAGGC
TGTGATTTGTTAGTGGACAGTTGCCCCTGTCCAAACGGGTCCTCTGAATGTCCAAAATTT
CTTTTACTGTTTTGTTGAGCCTTTTTATTTGTGGGATGGGATTTATATCTAGGTAATATT
AACTACCACAATGTATTGGTTGCTAGCTGTTGGGGAGTATTTTTCATCTGTCAGTCAGTG
GAACTCAGGTCTGCAGTAAGTTTGTTCATGATTGAGAGCATATAGCTTATATCTCACCCA
GCTGCTGACTTCAGGCAGATAGAAACAATTACACTTTTTTTGTGGTATCTGTGTAACATA
CTGCTATCCCCTCTGTTTTTGTCTGGTAGCTTTGCTGCCCATTTTTAGATCTATCTTGCT
TGTCATGTTTTCTCTACTTTATTTTTTAACAACACTTTGCAATGCGTTCCGTTTTGGCAA
TTATATGATATATATTTTTCTGCTTATTAATCTTAACAGGTTGAAATTAATATATTGATG
TTGTATCATCACAGAGGCGGTCTTTCTTAGTCTTCAATATTTTCTTAGAGCTAAACGGTT
ATATTTTTTTTGGTGTCTACTTAGCAACAATGCCATCTCTTCAGTTATTGCAACTGACAG
AGCATGGACACAACCTTTTGTCTTTGAGAAGGTGTGCTGTTTTAACATTATATTTCTAAA
TTTTAGTAAGCCGATCATTTAGTTCTTATCTCATGTTCCTTATTCTTTACAAATATCAAC
ATGAGAGCTCTTGCAGTTGTTTCTGGTGTATTACTTGCGGGTGGAACTTTAGCGTATGCT
CAGTCAGCTCGGCGCCAAAAATGTCAGGAAGAATATTCTCATAGTGATGCAAATACATAG
ACCACGAGTAATCAGATCATTTGTCAAAATGGTGTTGATGGTAAATTGGTAAAATCAAGG
AAAAAGAAAGATGGCTCCTCCCATTGAATTCAAGTGTTGAAATATGTGATTCAAGTATTC
TGATTGAATACTTAAATTCAAGTATTCAAAGGTCTTACCAACATGTTATCTGAAAGAGCA
CTGAATCTAAACCATAGAACTTTATCATTTGAAGGTTGTTCAAGTTACTATGAGACCTGC
CAAGCAATCTGCGCTGGTGCTACAAGATTGCATATCCACATGTTTATGTAGTTCACATTT
GTTTCCCAAGTGGTGAAGATATTCAAATCTATATGTCGTTACTACACAGAATTGTTCAAG
TCAGTAGTGTAAAACTAGCTAATTATATTCAACCAGCTTCAA

consensusID : consensus_9013#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 903
fasta sequence

                              [CCCCCCCATGTATTTGCTTCTACCTTTGGGGAGTATTTGTCATCTGCTCAGTCCAGTGGGAATCTCAGTCTCCAGTAAGTTTGGTCATGATTGAGAGCACTATAGCCTTATATCTCACCCCAGCTGCTTGACTTCAGCCAGATAGAAACAATTACACTTTTTTTGTGGTATCTGTGTAACATACTGCTACTCCCCTCTCTGTTTTTGTCTGGTAGCTTTGCTGCCCACTTTTTAGATCTATCTTGCTTGTCATGTTTTCTCTACTTTAGTTCTTTAACAACACCTTCTGCAATGCGTTCCGTTTTGGCAATTATATGATATATATGTTTTCTGCTTATTAATCTTGAACCAGGTTGAAATTAATATATTGATGTTGTATCATCACCAGA-GCGGTCTTTCTTAGTCTGTCAATATCTTTCTTAGAGCTAAACAGTTATATTCTTTTTTGGTGTCTACTTAGCAACAATGCCATCTCTTCAGTTATTGCAACTGACAGAGCATGGACACAACCTTTTGTCTTTGAGAAGGTGTGCTGTTTTAACATTATATTTCTAAATTTTAGTAAGCCGATCATTTAGTTCTTATCTCATGTTCCTTATTCTTTACAAATATCAACATGAGAGCTCTTGCAGTTGTTTCTGGTGTATTACTTGCGGGTGGAACTTTAGCGTATGCTCAGTCAGCTCGGCGCCAAAAATGTCAGGAAGAATATTCTCATAGTGATGCAAATACATAGACCACGAGTAATCAGATCATTTGTCAAAATGGTGTTGATGGTAAATTGGTAAAATCAAGGAAAAAGAAAGATGGCTCCTCCCATTGAATTCAAGTGTTGAAATATGTGATTCAAGTATTTTGAAAGGATACTTAAATTCAAGTATTCAAAGGTCTAAAATTAAAAGG]

[+] EMBL BI813225             [CCCCCCCATGTATTTGCTTCTACCTTTGGGGAGTATTTGTCATCTGCTCAGTCCAGTGGGAATCTCAGTCTCCAGTAAGTTTGGTCATGATTGAGAGCACTATAGCCTTATATCTCACCCCAGCTGCTTGACTTCAGCCAGATAGAAACAATTACACTTTTTTTGTGGTATCTGTGTAACATACTGCTACTCCCCTCTCTGTTTTTGTCTGGTAGCTTTGCTGCCCACTTTTTAGATCTATCTTGCTTGTCATGTTTTCTCTACTTTAGTTCTTTAACAACACCTTCTGCAATGCGTTCCGTTTTGGCAATTATATGATATATATGTTTTCTGCTTATTAATCTTGAACCAGGTTGAAATTAATATATTGATGTTGTATCATCACCAGA GCGGTCTTTCTTAGTCTGTCAATATCTTTCTTAGAGCTAAACAGTTATATTCTTTTTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB672204             [                                                                                 TGTTCATGATTGAGAGCA TATAG CTTATATCTCA CCCAGCTGC TGACTTCAGGCAGATAGAAACAATTACACTTTTTTTGTGGTATCTGTGTAACATACTGCTA TCCC  CTCTGTTTTTGTCTGGTAGCTTTGCTGCCCA TTTTTAGATCTATCTTGCTTGTCATGTTTTCTCTACTTTA TTTTTTAACAACA CTT TGCAATGCGTTCCGTTTTGGCAATTATATGATATATAT TTTTCTGCTTATTAATCTT AA CAGGTTGAAATTAATATATTGATGTTGTATCATCA CAGAGGCGGTCTTTCTTAGTCT TCAATAT TTTCTTAGAGCTAAACGGTTATATT TTTTTTGGTGTCTACTTAGCAACAATGCCATCTCTTCAGTTATTGCAACTGACAGAGCATGGACACAACCTTTTGTCTTTGAGAAGGTGTGCTGTTTTAACATTATATTTCTAAATTTTAGTAAGCCGATCATTTAGTTCTTATCTCATGTTCCTTATTCTTTACAAATATCAACATGAGAGCTCTTGCAGTTGTTTCTGGTGTATTACTTGCGGGTGGAACTTTAGCGTATGCTCAGTCAGCTCGGCGCCAAAAATGTCAGGAAGAATATTCTCATAGTGATGCAAATACATAGACCACGAGTAATCAGATCATTTGTCAAAATGGTGTTGATGGTAAATTGGTAAAATCAAGGAAAAAGAAAGATGGCTCCTCCCATTGAATTCAAGTGTTGAAATATGTGATTCAAGTATTTTGAAAGGATACTTAAATTCAAGTATTCAAAGGTCTAAAATTAAAAGG]




>consensus_9013#1
CCCCCCCATGTATTTGCTTCTACCTTTGGGGAGTATTTGTCATCTGCTCAGTCCAGTGGG
AATCTCAGTCTCCAGTAAGTTTGGTCATGATTGAGAGCACTATAGCCTTATATCTCACCC
CAGCTGCTTGACTTCAGCCAGATAGAAACAATTACACTTTTTTTGTGGTATCTGTGTAAC
ATACTGCTACTCCCCTCTCTGTTTTTGTCTGGTAGCTTTGCTGCCCACTTTTTAGATCTA
TCTTGCTTGTCATGTTTTCTCTACTTTAGTTCTTTAACAACACCTTCTGCAATGCGTTCC
GTTTTGGCAATTATATGATATATATGTTTTCTGCTTATTAATCTTGAACCAGGTTGAAAT
TAATATATTGATGTTGTATCATCACCAGAGCGGTCTTTCTTAGTCTGTCAATATCTTTCT
TAGAGCTAAACAGTTATATTCTTTTTTGGTGTCTACTTAGCAACAATGCCATCTCTTCAG
TTATTGCAACTGACAGAGCATGGACACAACCTTTTGTCTTTGAGAAGGTGTGCTGTTTTA
ACATTATATTTCTAAATTTTAGTAAGCCGATCATTTAGTTCTTATCTCATGTTCCTTATT
CTTTACAAATATCAACATGAGAGCTCTTGCAGTTGTTTCTGGTGTATTACTTGCGGGTGG
AACTTTAGCGTATGCTCAGTCAGCTCGGCGCCAAAAATGTCAGGAAGAATATTCTCATAG
TGATGCAAATACATAGACCACGAGTAATCAGATCATTTGTCAAAATGGTGTTGATGGTAA
ATTGGTAAAATCAAGGAAAAAGAAAGATGGCTCCTCCCATTGAATTCAAGTGTTGAAATA
TGTGATTCAAGTATTTTGAAAGGATACTTAAATTCAAGTATTCAAAGGTCTAAAATTAAA
AGG

consensusID : consensus_9013#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 805
fasta sequence

                              [TGNATGCTACTTCCAAATTTGAGCATACTAAGATGCACTGATGAACATGGTACTGTTACATTACTCTAAGATGTGATTTCAGGCTCATGGTTCTTCGTATGGTATAAGTTGCAGGTATTGAAGTGCTGGGCTGGAAATTCTCACAAATGCTAGGACACCCAGCAGCACTGCCACAACAAGTCAGCAATCAAAGTCTCCATGCGCATGTGCATGCTGCTGAATGAGTGCAAGGATATTTTTGAGGCTTTGTACAAATTATTTATGATCTACGCACCTACTTGAAGCCACATTTGTTTCTGGTGTATTACTTGCGGGTGGAACTTTAGCGTATGCTCAGTCAGCTCGGCGCCAAAAATGTCAGGAAGAATATTCTCATAGTGATGCAAATACATAGACCACGAGTAATCAGATCATTTGTCAAAATGGTGTTGATGGTAAATTGGTAAAATCAAGGAAAAAGAAAGATGGCTCCTCCCATTGAATTCAAGTGTTGAAATATGTGATTCAAGTATTCTGATTGAATACTTAAATTCAAGTATTCAAAGGTCTTACCAACATGTTATCTGAAAGAGCACTGAATCTAAACCATAGAACTTTATCATTTGAAGGTTGTTCAAGTTACTATGAGACCTGCCAAGCAATCTGCGCTGGTGCTACAAGATTGCATATCCACATGTTTATGTAGTTCACATTTGTTTCCCAAGTGGTGAAGATATTCAAATCTATATGTCGTTACTACACAGAATTGTTCAAGTCAGTAGTGTAAAACTAGCTAATTATATTCAACCAGCTTCAATTTTCTTAC]

[-] EMBL CB675315             [TGNATGCTACTTCCAAATTTGAGCATACTAAGATGCACTGATGAACATGGTACTGTTACATTACTCTAAGATGTGATTTCAGGCTCATGGTTCTTCGTATGGTATAAGTTGCAGGTATTGAAGTGCTGGGCTGGAAATTCTCACAAATGCTAGGACACCCAGCAGCACTGCCACAACAAGTCAGCAATCAAAGTCTCCATGCGCATGTGCATGCTGCTGAATGAGTGCAAGGATATTTTTGAGGCTTTGTACAAATTATTTATGATCTACGCACCTACTTGAAGCCACATTTGTTTCTGGTGTATTACTTGCGGGTGGAACTTTAGCGTATGCTCAGTCAGCTCGGCGCCAAAAATGTCAGGAAGAATATTCTCATAGTGATGCAAATACATAGACCACGAGTAATCAGATCATTTGTCAAAATGGTGTTGATGGTAAATTGGTAAAATCAAGGAAAAAGAAAGATGGCTCCTCCCATTGAATTCAAGTGTTGAAATATGTGATTCAAGTATTCTGATTGAATACTTAAATTCAAGTATTCAAAGGTCTTACCAACATGTTATCTGAAAGAGCACTGAATCTAAACCATAGAACTTTATCATTTGAAGGTTGTTCAAGTTACTATGAGACCTGCCAAGCAATCTGCGCTGGTGCTACAAGATTGCATATCCACATGTTTATGTAGTTCACATTTGTTTCCCAAGTGGTGAAGATATTCAAATCTATATGTCGTTACTACACAGAATTGTTCAAGTCAGTAGTGTAAAACTAGCTAATTATATTCAACCAGCTTCAATTTTCTTAC]
[+] EMBL AA752444             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cgagAAGTATTCTGATTGAATACTTAAATTCAAGTATTCAAAGGTCTTACCAACATGTTATCTGAAAGAGCACTGAATCTAAACCATAGAACTTTATCATTTGAAGGTTGTTCAGGTTACTATGAGACCTGCCAAGCAATCTGCn                                                                                                                                                              ]




>consensus_9013#2
TGNATGCTACTTCCAAATTTGAGCATACTAAGATGCACTGATGAACATGGTACTGTTACA
TTACTCTAAGATGTGATTTCAGGCTCATGGTTCTTCGTATGGTATAAGTTGCAGGTATTG
AAGTGCTGGGCTGGAAATTCTCACAAATGCTAGGACACCCAGCAGCACTGCCACAACAAG
TCAGCAATCAAAGTCTCCATGCGCATGTGCATGCTGCTGAATGAGTGCAAGGATATTTTT
GAGGCTTTGTACAAATTATTTATGATCTACGCACCTACTTGAAGCCACATTTGTTTCTGG
TGTATTACTTGCGGGTGGAACTTTAGCGTATGCTCAGTCAGCTCGGCGCCAAAAATGTCA
GGAAGAATATTCTCATAGTGATGCAAATACATAGACCACGAGTAATCAGATCATTTGTCA
AAATGGTGTTGATGGTAAATTGGTAAAATCAAGGAAAAAGAAAGATGGCTCCTCCCATTG
AATTCAAGTGTTGAAATATGTGATTCAAGTATTCTGATTGAATACTTAAATTCAAGTATT
CAAAGGTCTTACCAACATGTTATCTGAAAGAGCACTGAATCTAAACCATAGAACTTTATC
ATTTGAAGGTTGTTCAAGTTACTATGAGACCTGCCAAGCAATCTGCGCTGGTGCTACAAG
ATTGCATATCCACATGTTTATGTAGTTCACATTTGTTTCCCAAGTGGTGAAGATATTCAA
ATCTATATGTCGTTACTACACAGAATTGTTCAAGTCAGTAGTGTAAAACTAGCTAATTAT
ATTCAACCAGCTTCAATTTTCTTAC

consensusID : consensus_9013#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 113
fasta sequence

                              [TTGTCTTTGAGAAGGTGTGCTGTTTTAACATTATATTTCTAAATTTTAGTAAGCCGATCATTTAGTTCTTATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF329578             [TTGTCTTTGAGAAGGTGTGCTGTTTTAACATTATATTTCTAAATTTTAGTAAGCCGATCATTTAGTTCTTATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9013#3
TTGTCTTTGAGAAGGTGTGCTGTTTTAACATTATATTTCTAAATTTTAGTAAGCCGATCA
TTTAGTTCTTATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      TGGTATTATTTTCTATAGTGACAACCTGTACTAATTACAGATCTAATATTGTGCCTCAAC 60
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      CTCACATGTTGAATATGTTGGCTTACGTCAGTTAGACCTCTACGTAGAAAGCATCAATGG 120
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      TTGTGAGGCCTACTGATTTCTCTCTCACTCTAAGTCCGAGAAAAATATTGTCGTGTTGAT 180
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      GCTACTTCCAAATTTGAGCATACTAAGATGCACTGATGAACATGGTACTGTTACATTACT 240
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      CTAAGATGTGATTTCAGGCTCATGGTTCTTCGTATGGTATAAGTTGCAGGTATTGAAGTG 300
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      CTGGGCTGGAAATTCTCACAAATGCTAGGTATGTGGGCACTCCAGAACATGGGTTTTAGC 360
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      ATAGCGTCCGGATAACATTTTTCCAATGTTTATTTGCCTAAAAGTGATCTTTAATTACTT 420
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      GTATAGTTTTTACCGCCCCTTGTATATTGTGTGGGTTATGATTACATCTTTTCAATTCGC 480
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      ATGTGTTACATGTGCTCCCTTAGAATGGTTTTTAATTTCTTGTAGTTTCTGCAGGGCTAA 540
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      ATCACATGTGTGCCCCTGGAAAGCATTTTCAGCTGTTTGAATCTTGCTTTTTCTCATCTT 600
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      AATGAACGTCTGCATTTAATTTTTTTTTAGGCATTCATGCTTCCACACAACGGTTGTGCA 660
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      TTTTCCCTGACTTGTTTGATTGCAGGACACCCAGCAGCACTGCCACAACAAGTCAGCAAT 720
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      CAAAGTCTCCATGCGCATGTGCATGCTGGTAACCTCTACCACTATGTGCATACATAATAA 780
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      ATTAAATTTACTTTTGCCACTTGAAACCTATAAACACAGGCAACTATTTTTTTTCTTTTT 840
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      CATTTCCAAAGGTTTGTTTCAGTGTTAACCTTGGTATTTTTTTTCCTATCAAACTATCCA 900
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      AGCTGAATGAGTGCAAGGATATTTTTGAGGCTTTGTACAAATTATTTATGATCTACGCAC 960
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      CTACTTGAAGCCACATGTAAGAATCTTGAACTTTTTTAAACCACTCATTTAATTTTTATT 1020
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      TTTGGCTATAACATTGATATAACCTTTTGTTGTATAGATTGCCATTCTTGATAGTGTGAC 1080
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      CATGAGTGGTATAGCCGAGATGTTTCCACTCCTATAACATTTTACATTGCCACTAAAAAC 1140
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      AATGTGATTGATCAGTTAATAGGTGCAACCTTGGATGAGAAAAATACTTTTTGGATTTTC 1200
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      TCCTGATCTGTTTTGTCATAATTGTCATGTTAACCTTTGAAATCTAATCTTGGGATGGAG 1260
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      AGTTAATGGCTTGTATGGTAGGATGTGTTGCTGCTCGTGTGCACACTACACAGTAGGTGG 1320
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      GGGGTGTGAAGGGGTCATATATTTTTGTCTGGTAGCTTTGCTCGTGGGCCACAAAACACC 1380
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      TCTTGTCATTGCTTCTGTTGATGCATATGCTACTGCAAACAGCTATGATTATGTTCAGGC 1440
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      TGTGATTTGTTAGTGGACAGTTGCCCCTGTCCAAACGGGTCCTCTGAATGTCCAAAATTT 1500
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      CTTTTACTGTTTTGTTGAGCCTTTTTATTTGTGGGATGGGATTTATATCTAGGTAATATT 1560
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      ---CCCCCCCATGTATTTGCTTCTACCTTTGGGGAGTATTTGTCATCTGCTCAGTCCAGT 57
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      AACTACCACAATGTATTGGTTGCTAGCTGTTGGGGAGTATTTTTCATCTGTCAGTCAGT- 1619
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      GGGAATCTCAGTCTCCAGTAAGTTTGGTCATGATTGAGAGCACTATAGCCTTATATCTCA 117
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      -GGAACTCAGGTCTGCAGTAAGTTTGTTCATGATTGAGAGCATATAGCTTATATCTCACC 1678
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      CCCCAGCTGCTTGACTTCAGCCAGATAGAAACAATTACACTTTTTTTGTGGTATCTGTGT 177
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      CAGCTGCTG----ACTTCAGGCAGATAGAAACAATTACACTTTTTTTGTGGTATCTGTGT 1734
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      AACATACTGCTACTCCCCTCTCTGTTTTTGTCTGGTAGCTTTGCTGCCCACTTTTTAGAT 237
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      AACATACTGCTA---TCCCCTCTGTTTTTGTCTGGTAGCTTTGCTGCCCA-TTTTTAGAT 1790
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      CTATCTTGCTTGTCATGTTTTCTCTACTTTAGTTCTTTAACAACACCTTCTGCAATGCGT 297
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      CTATCTTGCTTGTCATGTTTTCTCTACTTTATTTTTTAACA---ACACTTTGCAATGCGT 1847
consensus_9013#2      ------------------------------------------------------------
                                                                                  

consensus_9013#1      TCCGTTTTGGCAATTATATGATATATATGTTTTCTGCTTATTAATCTTGAACCAGGTTGA 357
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      TCCGTTTTGGCAATTATATGATATATAT-TTTTCTGCTTATTAATCTTAA--CAGGTTGA 1904
consensus_9013#2      --------------------------------------TGNATGCTACTTCCAAATTTGA 22
                                                                                  

consensus_9013#1      AATTAATATATTGATGTTGTATCATCACCAGAGCGGTCTTTCTTAGTCTGTCAATATCTT 417
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      AATTAATATATTGATGTTGTATCATCACAGAGGCGGTCTTTCTTAGTCTTCAAT--ATTT 1962
consensus_9013#2      GCATACTAAGATGCACTGATGAACATGGTACTGTTACATTACTCTAAGATGTGATTTCAG 82
                                                                                  

consensus_9013#1      TCTTAGAGCTAAACAGTTATATTCTTTTTTGGTGTCTACTTAGCAACAATGCCATCTCTT 477
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      TCTTAGAGCTAAACGGTTATATT-TTTTTTGGTGTCTACTTAGCAACAATGCCATCTCTT 2021
consensus_9013#2      GCTCATGGTTCTTCGTATGGTATAAGTTGCAGGTATTGAAGTGCTGGGCTGGAAATTCT- 141
                                                                                  

consensus_9013#1      CAGTTATTGCAACTGACAGAGCATGGACACAACCTTTTGTCTTTGAGAAGGTGTGCTGTT 537
consensus_9013#3      ------------------------------------TTGTCTTTGAGAAGGTGTGCTGTT 24
consensus_9013#0      CAGTTATTGCAACTGACAGAGCATGGACACAACCTTTTGTCTTTGAGAAGGTGTGCTGTT 2081
consensus_9013#2      CACAAATGCTAGGACACCCAGCAGCACTGCCACAACAAGTCAGCAATCAAAGTCTCCATG 201
                                                            ***    *  *      *  * 

consensus_9013#1      TTAACAT-TATATTTCTAAATTTTAGTAAGCCGATCATTTAGTTCTTATCTCATGTTCCT 596
consensus_9013#3      TTAACAT-TATATTTCTAAATTTTAGTAAGCCGATCATTTAGTTCTTATCTAAAAAAAAA 83
consensus_9013#0      TTAACAT-TATATTTCTAAATTTTAGTAAGCCGATCATTTAGTTCTTATCTCATGTTCCT 2140
consensus_9013#2      CGCATGTGCATGCTGCTGAATGAGTGCAAGGATATTTTTGAGGCTTTGTAC-AAATTATT 260
                         *  *  **  * ** ***    * ***   **  ** **   ** *   *       

consensus_9013#1      TATTCTTTACAAATATCAACATGAGAGCTCTTGCAGTTGTTTCTGGTGTATTACTTGCGG 656
consensus_9013#3      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 113
consensus_9013#0      TATTCTTTACAAATATCAACATGAGAGCTCTTGCAGTTGTTTCTGGTGTATTACTTGCGG 2200
consensus_9013#2      TATGATCTACGCACCTACTTGAAGCCACATTTG------TTTCTGGTGTATTACTTGCGG 314
                       *      *   *                                               

consensus_9013#1      GTGGAACTTTAGCGTATGCTCAGTCAGCTCGGCGCCAAAAATGTCAGGAAGAATATTCTC 716
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      GTGGAACTTTAGCGTATGCTCAGTCAGCTCGGCGCCAAAAATGTCAGGAAGAATATTCTC 2260
consensus_9013#2      GTGGAACTTTAGCGTATGCTCAGTCAGCTCGGCGCCAAAAATGTCAGGAAGAATATTCTC 374
                                                                                  

consensus_9013#1      ATAGTGATGCAAATACATAGACCACGAGTAATCAGATCATTTGTCAAAATGGTGTTGATG 776
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      ATAGTGATGCAAATACATAGACCACGAGTAATCAGATCATTTGTCAAAATGGTGTTGATG 2320
consensus_9013#2      ATAGTGATGCAAATACATAGACCACGAGTAATCAGATCATTTGTCAAAATGGTGTTGATG 434
                                                                                  

consensus_9013#1      GTAAATTGGTAAAATCAAGGAAAAAGAAAGATGGCTCCTCCCATTGAATTCAAGTGTTGA 836
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      GTAAATTGGTAAAATCAAGGAAAAAGAAAGATGGCTCCTCCCATTGAATTCAAGTGTTGA 2380
consensus_9013#2      GTAAATTGGTAAAATCAAGGAAAAAGAAAGATGGCTCCTCCCATTGAATTCAAGTGTTGA 494
                                                                                  

consensus_9013#1      AATATGTGATTCAAGTATTTTGAAAGGATACTTAAATTCAAGTATTCAAAGGTCTAAAAT 896
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      AATATGTGATTCAAGTATTCTGATTGAATACTTAAATTCAAGTATTCAAAGGTCTTACCA 2440
consensus_9013#2      AATATGTGATTCAAGTATTCTGATTGAATACTTAAATTCAAGTATTCAAAGGTCTTACCA 554
                                                                                  

consensus_9013#1      TAAAAGG----------------------------------------------------- 903
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      ACATGTTATCTGAAAGAGCACTGAATCTAAACCATAGAACTTTATCATTTGAAGGTTGTT 2500
consensus_9013#2      ACATGTTATCTGAAAGAGCACTGAATCTAAACCATAGAACTTTATCATTTGAAGGTTGTT 614
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      CAAGTTACTATGAGACCTGCCAAGCAATCTGCGCTGGTGCTACAAGATTGCATATCCACA 2560
consensus_9013#2      CAAGTTACTATGAGACCTGCCAAGCAATCTGCGCTGGTGCTACAAGATTGCATATCCACA 674
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      TGTTTATGTAGTTCACATTTGTTTCCCAAGTGGTGAAGATATTCAAATCTATATGTCGTT 2620
consensus_9013#2      TGTTTATGTAGTTCACATTTGTTTCCCAAGTGGTGAAGATATTCAAATCTATATGTCGTT 734
                                                                                  

consensus_9013#1      ------------------------------------------------------------
consensus_9013#3      ------------------------------------------------------------
consensus_9013#0      ACTACACAGAATTGTTCAAGTCAGTAGTGTAAAACTAGCTAATTATATTCAACCAGCTTC 2680
consensus_9013#2      ACTACACAGAATTGTTCAAGTCAGTAGTGTAAAACTAGCTAATTATATTCAACCAGCTTC 794
                                                                                  

consensus_9013#1      -----------
consensus_9013#3      -----------
consensus_9013#0      AA--------- 2682
consensus_9013#2      AATTTTCTTAC 805