cluster # 9020

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Oryza sativa
cluster # 9020 cluster # 9020 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9020#0 length = 719 sequences # 4

consensus_9020#1 length = 422 sequences # 1
consensus_9020#2 length = 133 sequences # 1

consensusID : consensus_9020#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 719
fasta sequence

                              [AGCCACGAAACGAAGCTGGAAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCATGTGGGCGTCGATTAATCGGCCGCCGACCCCGAATCGGGAGGAGGATCCGCAGAAGGAGCTTTCCCTCAGAGAAATCATCAACGTCAAGTTGGTAGAGAGTGGGGAGAAGGAGAAGCTGATGGAGCTCCTCCGGGAGCGGCTCGTCGAGTGCGGCTGGAGGGACGAGATGAAAGCTCTCTGCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATGTCATTACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTGAAGGCAGAGCTCCTGCAACGCATCCAATCCTTTCTCATGTCTTCTTCCTCACTTCGGTAGTCCATTTGTCGTAATCACTGGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGGAGGAGCTATGCAGGAATACAATGCATCCTGTAATATCAACACCAAAACGATCGAGTGATATTTATAGTGTTGTCGACAATGTTTCTCTTGTCAGGCAGGCAGTTGGGCCTGTTCTCAGTCTGTACACCTCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTATGCTGCACTGTGTTGTGTTGGCTTTGGTTGCCCCTGGATGATCGAAATCATAAAAATTATATATCTT]

[+] EMBL AK120182             [AGCCACGAAACGAAGCTGGAAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCATGTGGGCGTCGATTAATCGGCCGCCGACCCCGAATCGGGAGGAGGATCCGCAGAAGGAGCTTTCCCTCAGAGAAATCATCAACGTCAAGTTGGTAGAGAGTGGGGAGAAGGAGAAGCTGATGGAGCTCCTCCGGGAGCGGCTCGTCGAGTGCGGCTGGAGGGACGAGATGAAAGCTCTCTGCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATGTCATTACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTGAAGGCAGAGCTCCTGCAACGCATCCAATCCTTTCTCATGTCTTCTTCCTCACTTCGGTAGTCCATTTGTCGTAATCACTGGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGGAGGAGCTATGCAGGAATACAATGCATCCTGTAATATCAACACCAAAACGATCGAGTGATATTTATAGTGTTGTCGACAATGTTTCTCTTGTCAGGCAGGCAGTTGGGCCTGTTCTCAGTCTGTACACCTCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTATGCTGCACTGTGTTGTGTTGGCTTTGGTTGCCCCTGGATGATCGAAATCATAAAAATTATATA    ]
[+] EMBL CF298261             [                                GGAAGGGGAGGAGAATCCAATCCAATCATGTGGGCGTCGATTAATCGGCCGCCGACCCCGAATCGGGAGGAGGATCCGCAGAAGGAGCTTTCCCTCAGAGAAATCATCAACGTTAAGTTGGTAGAGAGTGGGGAGAAGGAGAAGCTGATGGAGCTCCTCCGGGAGCGGCTCGTCGAGTGCGGCTGGAGGGACGAGATGAAAGCTCTCTGCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATGTCATTACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTGAAGGCAGAGCTCCTGCAACGCATCCAATCCTTTCTCATGTCTTCTTCCTCACTTCGGTAGTCCATTTGTCGTAATCACTGGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGG                                                                                                                                                                                                                                                                   ]
[-] EMBL BU673491             [                                                          CATGAGGGCGTCGATTAATCGGCCGCCGACCCCGAATCGGGAGGAGGATCCGCAGAAGGAGCTTTCCCTCAGAGAAATCATCAACGTCAAGTTGGTAGAGAGTGGGGAGAAGGAGAAGCTGATGGAGCTCCTCCGGGAGCGGCTCGTCGAGTGCGGCTGGAGGGACGAGATGAAAGCTCTCTGCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATGTCATTACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTGAAGGCGGAGCTCCTGCAACGCATCCAATCCTTTCTCATGTCTTCTTCCTCACTTCGGTAGTCCATTTATCGTAATCACTGGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGGAGGAGCTATGCAGGAATACAATGCATCCTGTAATATCAACACCNAAACGATCGAGTGATATTTATAGTGTTGTCGACAATGTTTCTCTTGTCAGGCAGGCAGTTGGGCCTGTTCTCAGTCTGTACACCTCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTA ACTGCAgctattcc                                                    ]
[+] EMBL CB657037             [                                                                                                                                                                                   ATGGCCCTCCTCCGGGAGCGGCTCGTCGAGTGCGGCTGGAGGGACGAGATGAAAGCTCTCTGCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATGTCATTACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTGAAGGCAGAGCTCCTGCAACGCATCCAATCCTTTCTCATGTCTTCTTCCTCACTTCGGTAGTCCATTTGTCGTAATCACTGGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGGAGGAGCTATGCAGGAATACAATGCATCCTGTAATATCAACACCAAAACGATCGAGTGATATTTATAGTGTTGTCGACAATGTTTCTCTTGTCAGGCAGGCAGTTGGGCCTGTTCTCAGTCTGTACACCTCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTATGCTGCACTGTGTTGTGTTGGCTTTGGTTGCCCCTGGATGATCGAAATCATAAAAATTATATATCTT]




>consensus_9020#0
AGCCACGAAACGAAGCTGGAAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCA
TGTGGGCGTCGATTAATCGGCCGCCGACCCCGAATCGGGAGGAGGATCCGCAGAAGGAGC
TTTCCCTCAGAGAAATCATCAACGTCAAGTTGGTAGAGAGTGGGGAGAAGGAGAAGCTGA
TGGAGCTCCTCCGGGAGCGGCTCGTCGAGTGCGGCTGGAGGGACGAGATGAAAGCTCTCT
GCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATG
TCATTACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTGAAGGCAGAGCTCCTGCAAC
GCATCCAATCCTTTCTCATGTCTTCTTCCTCACTTCGGTAGTCCATTTGTCGTAATCACT
GGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGGAGGAGCTATGCAGGAATACA
ATGCATCCTGTAATATCAACACCAAAACGATCGAGTGATATTTATAGTGTTGTCGACAAT
GTTTCTCTTGTCAGGCAGGCAGTTGGGCCTGTTCTCAGTCTGTACACCTCTTTACCCTGC
TTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTATGCTGCAC
TGTGTTGTGTTGGCTTTGGTTGCCCCTGGATGATCGAAATCATAAAAATTATATATCTT

consensusID : consensus_9020#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [CGAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCATGTGGGCGTCGATTAATCGGCCGCCGACCCGAATCGGGAGGAGGATCCGCAGAAGGAGCTTTCCTCAGAGAAATCATCAACGKCAAGTTKGTAGAGAGTTGGGAGAAGGAGAAGCTKATKGAGCTCCTCCGGGAGCCGCTYSTCGAGTGCGGCTKGAGGGACGAGATGAAAGCTCTCTGCARGGYCTATGCAAGGAAGRAAGGAAGAAATAATGTTACAGKAGATGATCTTATTCATGTCATTACTCCAAAAGGGAGAGCATCAGTGBCTKATTCTGTKTAAGGCAGAGCTTCTGCAACGGATYCAATYCTTTCTCATGTCTTCTKCCTCACTKCGGKAGKCCAHTKTGCKCGTAATCACTGGMGCCGVAGTATGMAGGT]

[+] EMBL AA754221             [CGAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCATGTGGGCGTCGATTAATCGGCCGCCGACCCGAATCGGGAGGAGGATCCGCAGAAGGAGCTTTCCTCAGAGAAATCATCAACGKCAAGTTKGTAGAGAGTTGGGAGAAGGAGAAGCTKATKGAGCTCCTCCGGGAGCCGCTYSTCGAGTGCGGCTKGAGGGACGAGATGAAAGCTCTCTGCARGGYCTATGCAAGGAAGRAAGGAAGAAATAATGTTACAGKAGATGATCTTATTCATGTCATTACTCCAAAAGGGAGAGCATCAGTGBCTKATTCTGTKTAAGGCAGAGCTTCTGCAACGGATYCAATYCTTTCTCATGTCTTCTKCCTCACTKCGGKAGKCCAHTKTGCKCGTAATCACTGGMGCCGVAGTATGMAGGT]




>consensus_9020#1
CGAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCATGTGGGCGTCGATTAATC
GGCCGCCGACCCGAATCGGGAGGAGGATCCGCAGAAGGAGCTTTCCTCAGAGAAATCATC
AACGKCAAGTTKGTAGAGAGTTGGGAGAAGGAGAAGCTKATKGAGCTCCTCCGGGAGCCG
CTYSTCGAGTGCGGCTKGAGGGACGAGATGAAAGCTCTCTGCARGGYCTATGCAAGGAAG
RAAGGAAGAAATAATGTTACAGKAGATGATCTTATTCATGTCATTACTCCAAAAGGGAGA
GCATCAGTGBCTKATTCTGTKTAAGGCAGAGCTTCTGCAACGGATYCAATYCTTTCTCAT
GTCTTCTKCCTCACTKCGGKAGKCCAHTKTGCKCGTAATCACTGGMGCCGVAGTATGMAG
GT

consensusID : consensus_9020#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 133
fasta sequence

                              [TCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAA]

[+] EMBL CF335629             [TCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAA]




>consensus_9020#2
TCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTT
GTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC
AAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9020#0      AGCCACGAAACGAAGCTGGAAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCA 60
consensus_9020#1      ------------------CGAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCA 42
consensus_9020#2      ------------------------------------------------------------
                                                                                  

consensus_9020#0      TGTGGGCGTCGATTAATCGGCCGCCGACCCCGAATCGGGAGGAGGATCCGCAGAAGGAGC 120
consensus_9020#1      TGTGGGCGTCGATTAATCGGCCGCCGACCC-GAATCGGGAGGAGGATCCGCAGAAGGAGC 101
consensus_9020#2      ------------------------------------------------------------
                                                                                  

consensus_9020#0      TTTCCCTCAGAGAAATCATCAACGTCAAGTTGGTAGAGAGTGGGGAGAAGGAGAAGCTGA 180
consensus_9020#1      TTTCC-TCAGAGAAATCATCAACGKCAAGTTKGTAGAGAGTTGGGAGAAGGAGAAGCTKA 160
consensus_9020#2      ------------------------------------------------------TCTTTA 6
                                                                               * *

consensus_9020#0      TGGAGCTCCTCCGGGAGCGGCTCGTCGAGTGCGGCTGGAGGGACGAGATGAAAGCTCTCT 240
consensus_9020#1      TKGAGCTCCTCCGGGAGCCGCTYSTCGAGTGCGGCTKGAGGGACGAGATGAAAGCTCTCT 220
consensus_9020#2      CCCTGCTTAGATGTGAAC--CTTGAAAAATGTATTTTGA--------ATGGAAGCTTCCA 56
                          ***     * ** *  **     * **    * **        *** *****  * 

consensus_9020#0      GCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATG 300
consensus_9020#1      GCARGGYCTATGCAAGGAAGRAAGGAAGAAATAATGTTACAGKAGATGATCTTATTCATG 280
consensus_9020#2      GCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---AAAAAAAA 113
                      **  *    *   **  **  **  ** *** **    * *  * *  *    *   *  

consensus_9020#0      TCATTACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTG-AAGGCAGAGCTCCTGCAA 359
consensus_9020#1      TCATTACTCCAAAAGGGAGAGCATCAGTGBCTKATTCTGTKTAAGGCAGAGCTTCTGCAA 340
consensus_9020#2      AAAAAACAAAAAAAAAAAAA---------------------------------------- 133
                        *  **   ****   * *                                        

consensus_9020#0      CGCATCCAATCCTTTCTCATGTCTTCTTCCTCACTTCGGTAGTCCATTTG--TCGTAATC 417
consensus_9020#1      CGGATYCAATYCTTTCTCATGTCTTCTKCCTCACTKCGGKAGKCCAHTKTGCKCGTAATC 400
consensus_9020#2      ------------------------------------------------------------
                                                                                  

consensus_9020#0      ACTGGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGGAGGAGCTATGCAGGAAT 477
consensus_9020#1      ACTGGMGCCGVAG-TATGMAGGT------------------------------------- 422
consensus_9020#2      ------------------------------------------------------------
                                                                                  

consensus_9020#0      ACAATGCATCCTGTAATATCAACACCAAAACGATCGAGTGATATTTATAGTGTTGTCGAC 537
consensus_9020#1      ------------------------------------------------------------
consensus_9020#2      ------------------------------------------------------------
                                                                                  

consensus_9020#0      AATGTTTCTCTTGTCAGGCAGGCAGTTGGGCCTGTTCTCAGTCTGTACACCTCTTTACCC 597
consensus_9020#1      ------------------------------------------------------------
consensus_9020#2      ------------------------------------------------------------
                                                                                  

consensus_9020#0      TGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTATGCTG 657
consensus_9020#1      ------------------------------------------------------------
consensus_9020#2      ------------------------------------------------------------
                                                                                  

consensus_9020#0      CACTGTGTTGTGTTGGCTTTGGTTGCCCCTGGATGATCGAAATCATAAAAATTATATATC 717
consensus_9020#1      ------------------------------------------------------------
consensus_9020#2      ------------------------------------------------------------
                                                                                  

consensus_9020#0      TT 719
consensus_9020#1      --
consensus_9020#2      --