cluster # 9025

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Oryza sativa
cluster # 9025 cluster # 9025 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9025#0 length = 787 sequences # 1
consensus_9025#1 length = 782 sequences # 1

consensus_9025#2 length = 522 sequences # 3
consensus_9025#3 length = 156 sequences # 1

consensusID : consensus_9025#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 787
fasta sequence

                              [GGGCGGCGATCTCCATCCGGCGAGCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGGGAGGAGATCCTGGGGTGCCAAATTGGATCGTAGCGTCGTCTCCGTCTCCGTCTTGTCCACAGCTCCAGGCTCCACTCCTTGTGCTGCCACCCTCCCCTTTGCTTTGGACGTCGCCTCCTCATCAATGCACGCCGAGCGTCGCGTCTTCCTCCAGCTCATCTCAACGCCGGCGGCCGGTTCCACGCGGTGGCCGCGGCGGCCTCTGCCCCTCCGCTCGTTCCTCTCCTTGGGTGGGGGTCTTTAGAGCGCAGGGAGCCGCTCCGCCAGCCACAGCCCACAGGTACCTTCTGCGTGCTGCCTATCCGTGTCCATGTTGGTGTCGACTGCTGCGATCTCTGGTGAAGTGCTGCTTGCCATGGCAGCTGAAGCTAGCAGCATGGGAGAGCGAAGGAAACCAGCTGCACCGAAGCACTGAGCAAGATGGAAAATCCTCGTCGGCGGTATGGGTGGAGCAGTGTTTTTGGATTCGTTTTGGTTTGGAATGGGTTGAACCCATATTTCTGCCTTTGGTTTGGATTGATCCTACAGTTAGACTGGATTGGTTTGGGTTTTATCTCTGATGAATTGATTTGGAAGCACGCTGTGCGACGATATGGAGCGGGGCGGGTTCGGCCTGGATTCCAATCCATTGGCAGTTTGGCACCCTAGGCATGATATTTAAGCTGTTTCCTCAATTTTCCACTTTGATGCTAGAAGGTTTCTCCTTTACAACATTTCACTGTCTGTG]

[+] EMBL CB651169             [GGGCGGCGATCTCCATCCGGCGAGCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGGGAGGAGATCCTGGGGTGCCAAATTGGATCGTAGCGTCGTCTCCGTCTCCGTCTTGTCCACAGCTCCAGGCTCCACTCCTTGTGCTGCCACCCTCCCCTTTGCTTTGGACGTCGCCTCCTCATCAATGCACGCCGAGCGTCGCGTCTTCCTCCAGCTCATCTCAACGCCGGCGGCCGGTTCCACGCGGTGGCCGCGGCGGCCTCTGCCCCTCCGCTCGTTCCTCTCCTTGGGTGGGGGTCTTTAGAGCGCAGGGAGCCGCTCCGCCAGCCACAGCCCACAGGTACCTTCTGCGTGCTGCCTATCCGTGTCCATGTTGGTGTCGACTGCTGCGATCTCTGGTGAAGTGCTGCTTGCCATGGCAGCTGAAGCTAGCAGCATGGGAGAGCGAAGGAAACCAGCTGCACCGAAGCACTGAGCAAGATGGAAAATCCTCGTCGGCGGTATGGGTGGAGCAGTGTTTTTGGATTCGTTTTGGTTTGGAATGGGTTGAACCCATATTTCTGCCTTTGGTTTGGATTGATCCTACAGTTAGACTGGATTGGTTTGGGTTTTATCTCTGATGAATTGATTTGGAAGCACGCTGTGCGACGATATGGAGCGGGGCGGGTTCGGCCTGGATTCCAATCCATTGGCAGTTTGGCACCCTAGGCATGATATTTAAGCTGTTTCCTCAATTTTCCACTTTGATGCTAGAAGGTTTCTCCTTTACAACATTTCACTGTCTGTG]




>consensus_9025#0
GGGCGGCGATCTCCATCCGGCGAGCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGG
GAGGAGATCCTGGGGTGCCAAATTGGATCGTAGCGTCGTCTCCGTCTCCGTCTTGTCCAC
AGCTCCAGGCTCCACTCCTTGTGCTGCCACCCTCCCCTTTGCTTTGGACGTCGCCTCCTC
ATCAATGCACGCCGAGCGTCGCGTCTTCCTCCAGCTCATCTCAACGCCGGCGGCCGGTTC
CACGCGGTGGCCGCGGCGGCCTCTGCCCCTCCGCTCGTTCCTCTCCTTGGGTGGGGGTCT
TTAGAGCGCAGGGAGCCGCTCCGCCAGCCACAGCCCACAGGTACCTTCTGCGTGCTGCCT
ATCCGTGTCCATGTTGGTGTCGACTGCTGCGATCTCTGGTGAAGTGCTGCTTGCCATGGC
AGCTGAAGCTAGCAGCATGGGAGAGCGAAGGAAACCAGCTGCACCGAAGCACTGAGCAAG
ATGGAAAATCCTCGTCGGCGGTATGGGTGGAGCAGTGTTTTTGGATTCGTTTTGGTTTGG
AATGGGTTGAACCCATATTTCTGCCTTTGGTTTGGATTGATCCTACAGTTAGACTGGATT
GGTTTGGGTTTTATCTCTGATGAATTGATTTGGAAGCACGCTGTGCGACGATATGGAGCG
GGGCGGGTTCGGCCTGGATTCCAATCCATTGGCAGTTTGGCACCCTAGGCATGATATTTA
AGCTGTTTCCTCAATTTTCCACTTTGATGCTAGAAGGTTTCTCCTTTACAACATTTCACT
GTCTGTG

consensusID : consensus_9025#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 782
fasta sequence

                              [CAGTTGTTCATAAATTATTATTACCAAATAAAATAGAATAGAGATATCACCGATGGAAGAAAATGTCATAAAAAATATAAGCTTGATTTTCTTTTTTTACTTTCATGTTTATTGACTACCCTGTTGTGTAACTGTAAATTTTCAAATGTGAAAGCAGACTGACATAAAACTCCAACTACAACAGTTGCTCAATTTGAACTGTACAAATGCTGTAAACATTTGGTAACTGGTTTCTATAATTTGCTCGGTTAAGTTCATGAAACATCAGATTCCTTAGCATCTGCTTCATGAACACTTCGTCACTGGATTCATCCTCCTGTAACTCCATTCTTGAAGAAAGCGTTGGTGATTGGAAATACTAACCAGCACAGAAATGAAGAACATGAATCTGATATATAAACAAGCAAACGATCAGGAGCTACAAAAACACATGGAATACTCAAGTAACAAAGCTTGAATGGCATACATTTTGATATATTAGATTCTGTCAAAAAATTAATGGTGATACATTACACACTAAAATATACTAAAATAAAATGGATTAGCATAGCATGAAGCACAGCTGCAGTGCATATGCACTCGCACTAGCAATCTTAGAGCGAAATAGATTAACATAAGATGGTGGGCATGCCTTTGCACTGCGAGAACTAACCAAATACATATCAAAAGAAACTTGAGCAATCAATCATTAAAGATCAAGCCATCATGTGATTCTTCAGATACTGTGTGAATTAGATAAAATAGGCCCCAACCCTGTTTCCTATCTACTTAGACTTTAAACT]

[+] EMBL CB651170             [CAGTTGTTCATAAATTATTATTACCAAATAAAATAGAATAGAGATATCACCGATGGAAGAAAATGTCATAAAAAATATAAGCTTGATTTTCTTTTTTTACTTTCATGTTTATTGACTACCCTGTTGTGTAACTGTAAATTTTCAAATGTGAAAGCAGACTGACATAAAACTCCAACTACAACAGTTGCTCAATTTGAACTGTACAAATGCTGTAAACATTTGGTAACTGGTTTCTATAATTTGCTCGGTTAAGTTCATGAAACATCAGATTCCTTAGCATCTGCTTCATGAACACTTCGTCACTGGATTCATCCTCCTGTAACTCCATTCTTGAAGAAAGCGTTGGTGATTGGAAATACTAACCAGCACAGAAATGAAGAACATGAATCTGATATATAAACAAGCAAACGATCAGGAGCTACAAAAACACATGGAATACTCAAGTAACAAAGCTTGAATGGCATACATTTTGATATATTAGATTCTGTCAAAAAATTAATGGTGATACATTACACACTAAAATATACTAAAATAAAATGGATTAGCATAGCATGAAGCACAGCTGCAGTGCATATGCACTCGCACTAGCAATCTTAGAGCGAAATAGATTAACATAAGATGGTGGGCATGCCTTTGCACTGCGAGAACTAACCAAATACATATCAAAAGAAACTTGAGCAATCAATCATTAAAGATCAAGCCATCATGTGATTCTTCAGATACTGTGTGAATTAGATAAAATAGGCCCCAACCCTGTTTCCTATCTACTTAGACTTTAAACT]




>consensus_9025#1
CAGTTGTTCATAAATTATTATTACCAAATAAAATAGAATAGAGATATCACCGATGGAAGA
AAATGTCATAAAAAATATAAGCTTGATTTTCTTTTTTTACTTTCATGTTTATTGACTACC
CTGTTGTGTAACTGTAAATTTTCAAATGTGAAAGCAGACTGACATAAAACTCCAACTACA
ACAGTTGCTCAATTTGAACTGTACAAATGCTGTAAACATTTGGTAACTGGTTTCTATAAT
TTGCTCGGTTAAGTTCATGAAACATCAGATTCCTTAGCATCTGCTTCATGAACACTTCGT
CACTGGATTCATCCTCCTGTAACTCCATTCTTGAAGAAAGCGTTGGTGATTGGAAATACT
AACCAGCACAGAAATGAAGAACATGAATCTGATATATAAACAAGCAAACGATCAGGAGCT
ACAAAAACACATGGAATACTCAAGTAACAAAGCTTGAATGGCATACATTTTGATATATTA
GATTCTGTCAAAAAATTAATGGTGATACATTACACACTAAAATATACTAAAATAAAATGG
ATTAGCATAGCATGAAGCACAGCTGCAGTGCATATGCACTCGCACTAGCAATCTTAGAGC
GAAATAGATTAACATAAGATGGTGGGCATGCCTTTGCACTGCGAGAACTAACCAAATACA
TATCAAAAGAAACTTGAGCAATCAATCATTAAAGATCAAGCCATCATGTGATTCTTCAGA
TACTGTGTGAATTAGATAAAATAGGCCCCAACCCTGTTTCCTATCTACTTAGACTTTAAA
CT

consensusID : consensus_9025#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 522
fasta sequence

                              [CGTCGTCTACTCCGCTCCTTGT-CCATCTCGCGGCGGAACAGGGGAGGGGAGGGGCGGCGATCTCCATCCGGCGAGCGGCGAGCGACGAGCAGCGAGCAGAGCAGAGCAGGGGAGGAGATCCTGATTCATGTTCTTCATTTCTGTGCTGGTTAGTATTTCCAATCACCAACGCTTTCTTCAAGAATGGAGGAGGATGAATCCAGTGACGAAGTGTTCATGAAGCAGATGCTAAGGAATCTGATGTTTCATGAACTTAACCGAGCAAATTATAGAAACCAGTTACCAAATG-TTTACAGCATTTGTACAGTTCAAATTGAGCAACTGTTGTAGTTGGAGTTTTATGTCAGTCTGCTTTCACATTTGAAAATTTACAGTTACACAACAGGGTAGTCAATAAACATGAAAGTAAAAAAAGAAAATCAAGCTTATATTTTTTATGACATTTTCTTCCATCGGTGATATCTCTATTCTATTTTATTTGGTAATAATAATTTATGAACAACTGAATTCATCTAAAAAAAA]

[+] EMBL OSC0731              [CGTCGTCTACTCCGCTCCTTGTGCCATCTCGCGGCGGAACAGGGGAGGGGAGGGGCGGCGATCTCCATCCGGCGAGCGGCGAGCGACGAGCAGCGAGCAGAGCAGAGCAGGGGAGGAGATCCTGATTCATGTTCTTCATTTCTGTGCTGGTTAGTATTTCCAATCACCAACGCTTTCTTCAAGAATGGAGGAGGATGAATCCAGTGACGAANTGTTCATGAAGCAGATGCTAAGGAATCTGATGTTTCATGAACTTAACCGAGCAAATTATAGAAACCAGTTACCAAATGTTTTACAGCATTTTTACA                                                                                                                                                                                                                        ]
[+] EMBL AK120381             [ GTCGTCTACTCCGCTCCTTGT CCATCTCGCGGCGGAACAGGGGAGGGGAGGGGCGGCGATCTCCATCCGGCGAGCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGGGAGGAGATCCTGATTCATGTTCTTCATTTCTGTGCTGGTTAGTATTTCCAATCACCAACGCTTTCTTCAAGAATGGAGGAGGATGAATCCAGTGACGAAGTGTTCATGAAGCAGATGCTAAGGAATCTGATGTTTCATGAACTTAACCGAGCAAATTATAGAAACCAGTTACCAAATG TTTACAGCATTTGTACAGTTCAAATTGAGCAACTGTTGTAGTTGGAGTTTTATGTCAGTCTGCTTTCACATTTGAAAATTTACAGTTACACAACAGGGTAGTCAATAAACATGAAAGTAAAAAAAGAAAATCAAGCTTAT                                                                                             ]
[+] EMBL AU174350             [                                                                                            GCGAGCAGAGCAGAGCAGGGGAGGAGATCCTGATTCATGTTCTTCATTTCTGTGCTGGTTAGTATTTCCAATCACCAACGCTTTCTTCAAGAATGGAGGAGGATGAATCCAGTGACGAAGTGTTCATGAAGCAGATGCTAAGGAATCTGATGTTTCATGAACTTAACCGAGCAAATTATAGAAACCAGTTACCAAATG TTTACAGCATTTGTACAGTTCAAATTGAGCAACTGTTGTAGTTGGAGTTTTATGTCAGTCTGCTTTCACATTTGAAAATTTACAGTTACACAACAGGGTAGTCAATAAACATGAAAGTAAAAAAAGAAAATCAAGCTTATATTTTTTATGACATTTTCTTCCATCGGTGATATCTCTATTCTATTTTATTTGGTAATAATAATTTATGAACAACTGAATTCATCTAAAAAAAA]




>consensus_9025#2
CGTCGTCTACTCCGCTCCTTGTCCATCTCGCGGCGGAACAGGGGAGGGGAGGGGCGGCGA
TCTCCATCCGGCGAGCGGCGAGCGACGAGCAGCGAGCAGAGCAGAGCAGGGGAGGAGATC
CTGATTCATGTTCTTCATTTCTGTGCTGGTTAGTATTTCCAATCACCAACGCTTTCTTCA
AGAATGGAGGAGGATGAATCCAGTGACGAAGTGTTCATGAAGCAGATGCTAAGGAATCTG
ATGTTTCATGAACTTAACCGAGCAAATTATAGAAACCAGTTACCAAATGTTTACAGCATT
TGTACAGTTCAAATTGAGCAACTGTTGTAGTTGGAGTTTTATGTCAGTCTGCTTTCACAT
TTGAAAATTTACAGTTACACAACAGGGTAGTCAATAAACATGAAAGTAAAAAAAGAAAAT
CAAGCTTATATTTTTTATGACATTTTCTTCCATCGGTGATATCTCTATTCTATTTTATTT
GGTAATAATAATTTATGAACAACTGAATTCATCTAAAAAAAA

consensusID : consensus_9025#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 156
fasta sequence

                              [GGGACTAACCTTGCGGTCGCTCCTTGCGCCATCTCGCGGTGGAACAGGTGAGGGGAGGGGCGGCGATCTCCATCCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGGTGAGGAGATCNCTGATTCATGTTCTCTCATTTCTTGTGCTTGGTTA]

[+] EMBL CB967001             [GGGACTAACCTTGCGGTCGCTCCTTGCGCCATCTCGCGGTGGAACAGGTGAGGGGAGGGGCGGCGATCTCCATCCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGGTGAGGAGATCNCTGATTCATGTTCTCTCATTTCTTGTGCTTGGTTA]




>consensus_9025#3
GGGACTAACCTTGCGGTCGCTCCTTGCGCCATCTCGCGGTGGAACAGGTGAGGGGAGGGG
CGGCGATCTCCATCCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGGTGAGGAGATC
NCTGATTCATGTTCTCTCATTTCTTGTGCTTGGTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9025#2      ------------------------------------------------------------
consensus_9025#3      ------------------------------------------------------------
consensus_9025#0      GGGCGGCGATCTCCATCCGGCGAGCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGG 60
consensus_9025#1      -----------------CAGTTGTTCATAAATTATTATTACCAAATAAAATAGAATAGAG 43
                                                                                  

consensus_9025#2      ------------------------------------------------------------
consensus_9025#3      ------------------------------------------------------------
consensus_9025#0      GAGGAGATCCTGGGGTGCCAAATTGGATCGTAGCGTCGTCTCCGTCTCCGTCTTGTCCAC 120
consensus_9025#1      ATATCACCGATGGAAGAAAATGTCATAAAAAATATAAGCTTGATTTTCTTTTTTTACTTT 103
                                                                                  

consensus_9025#2      ------------------------------------------------------------
consensus_9025#3      ------------------------------------------------------------
consensus_9025#0      AGCTCCAGGCTCCACTCCTTGTGCTGCCACCCTCCCCTTTGCTTTGGACGTCGCCTCCTC 180
consensus_9025#1      CATGTTTATTGACTACCCTGTTGTGTAACTGTAAATTTTCAAATGTGAAAGCAGACTGAC 163
                                                                                  

consensus_9025#2      ------------------------------------------------------------
consensus_9025#3      ------------------------------------------------------------
consensus_9025#0      ATCAATGCACGCCGAGCGTCGCGTCTTCCTCCAGCTCATCTCAACGCCGGCGGCCGGTTC 240
consensus_9025#1      ATAAAACTCCAACTACAACAGTTGCTCAATTTGAACTGTACAAATGCTGTAAACATTTGG 223
                                                                                  

consensus_9025#2      -----------CG-TCGTCTA---CTCCGCTCCTTGT-CCATCTCGCGGCGGAACAGGGG 44
consensus_9025#3      ------GGGACTA-ACCTTGC---GGTCGCTCCTTGCGCCATCTCGCGGTGGAACAGGTG 50
consensus_9025#0      CACGCGGTGGCCG-CGGCGGC---CTCTGCCCCTCCGCTCGTTCCTCTCCTTGGGTGGGG 296
consensus_9025#1      TAACTGGTTTCTATAATTTGCTCGGTTAAGTTCATGAAACATCAGATTCCTTAGCATCTG 283
                                                      *      * *                 *

consensus_9025#2      AGGGGAGGG------GCGGCGATCTCCATCCGGCG--AGCGGCGAGCGACGAGCAGCGAG 96
consensus_9025#3      AGGGGAGGG------GCGGCGATCTCCATCCGGCG--AGCGGCGAGC-------AGCGAG 95
consensus_9025#0      GTCTTTAGA------GCGCAGGGAGCCGCTCCGCC--AGCCACAGCCCACAGGTACCTTC 348
consensus_9025#1      CTTCATGAACACTTCGTCACTGGATTCATCCTCCTGTAACTCCATTCTTGAAGAAAGCGT 343
                                     *          *   *  *   * *  *   *       *     

consensus_9025#2      CAGAGCAGAGCAGGG-GAGGAGATCC-TGATTCATGTTCT-TCATTTCT-GTGCT-GGTT 151
consensus_9025#3      CAGAGCAGAGCAGGGTGAGGAGATCNCTGATTCATGTTCTCTCATTTCTTGTGCTTGGTT 155
consensus_9025#0      TGCGTGCTGCCTATCCGTGTCCATGTTGGTGTCGACTGCTGCGATCTCTGGTGAAGTGCT 408
consensus_9025#1      TGGTGATTGGAAATACTAACCAGCACAGAAATGAAGAACATGAAT--CTGATATATAAAC 401
                                                     *      *    **  **  *        

consensus_9025#2      AGTATTTCCAATCACCAACGCTTTCTTCAAGAATGGAGGAGGATGAATCCAGTGACGAAG 211
consensus_9025#3      A----------------------------------------------------------- 156
consensus_9025#0      GCTTGCCATGGCAGCTGAAGCTAGCAGCATGG--GAGAGCGAAGGAAACCAGCTGCACCG 466
consensus_9025#1      AAGCAAACGATCAGGAGCTACAAAAACACATGGAATACTCAAGTAACAAAGCTTGAATGG 461
                                                                                  

consensus_9025#2      TGTTCATGAAGCAGATGCTAAGGAATCTGATGTTTCATGAACTTAACCGAGCAAATT-AT 270
consensus_9025#3      ------------------------------------------------------------
consensus_9025#0      AAGCACTGAGCAAGATGGAAAATCCTCGTCGGCGGTATGGGTGGAGCAGTGTTTTTGGAT 526
consensus_9025#1      CATACATTTTGATATATTAGATTCTGTCAAAAAATTAATGGTGATACATTACACACTAAA 521
                                                                                  

consensus_9025#2      AGAAACCAGTTACCAAATGTTTACAGCATTTGTACAGTTCAAATTGAGCAACTGTTGTAG 330
consensus_9025#3      ------------------------------------------------------------
consensus_9025#0      TCGTTTTGGTTTGGAATGGGTTGAACCCATATTTCTGCCTTTGGTTTGGATTGATCCTAC 586
consensus_9025#1      ATATACTAAAATAAAATGGATTAGCATAGCATGAAGCACAGCTGCAGTGCATATGCACTC 581
                                                                                  

consensus_9025#2      TTGGAGTTTTATGTCAGTCTGCTTTCACATTTGAAAATTTACAGTTACACAACAGGGTAG 390
consensus_9025#3      ------------------------------------------------------------
consensus_9025#0      AGTTAGACTGGATTGGTTTGGGTTTTATCTCTGATGAATTG--ATTTGGAAGCACGCTGT 644
consensus_9025#1      GCACTAGCAATCTTAGAGCGAAATAGATTAACATAAGATGGT-GGGCATGCCTTTGCACT 640
                                                                                  

consensus_9025#2      TCAATAAACATGAAAGTAAAAAAAGAAAATCAAGCTTATATTTTTTATGACATTTTCTTC 450
consensus_9025#3      ------------------------------------------------------------
consensus_9025#0      GCGACGA-TATGGAGCGGGGCGGGTTCGGCCTGGATTCCAATCCATTGGCAGTTTGGCAC 703
consensus_9025#1      GCGAGAACTAACCAAATACATATCAAAAGAAACTTGAGCAATCAATCATTAAAGATCAAG 700
                                                                                  

consensus_9025#2      CATCGGTGATATCTCTATTCTATTTTATTTGGTAATAATAATTTATGAACAACTGAATTC 510
consensus_9025#3      ------------------------------------------------------------
consensus_9025#0      CCTAGGCATGATATTTAAGCTGTTTCCTCAATT--TTCCACTTTGATGCTAGAAGGTTTC 761
consensus_9025#1      CCATCATGTGATTCTTCAGATACTGTGTGAATTAGATAAAATAGGCCCCAACCCTGTTTC 760
                                                                                  

consensus_9025#2      ATCTAAAAAAAA-------------- 522
consensus_9025#3      --------------------------
consensus_9025#0      TCCTTTACAACATTTCACTGTCTGTG 787
consensus_9025#1      CTATCTACTTAGACTTTAAACT---- 782