These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9029#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence [CTAGAAATCGCAACGCACGCAGCTAGGAAATCTGCAGCGAGCGAGCGAGCTCATCTTGATCGCATTGCATCTGCACTGCAAACGATCGAATCGAATCGAATCGGCCGAGGCATTTCACGCTGAACACGATGACGAAGGTGAGGGAAACTGTTCGATTAGTTGCTTCGCATGCATGCAGCTTAATTAGTTTTGATGATCCACTGATGAATCAGTTTCTTATTGGGGGCGTGGTTGAATAATGCAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCCATGGCGCTGGTGGCGAGGGCGTCCGGCGTGAACTCGATGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACCCGGTCTGCCTCGTCGCCTGCCTCCGCAGGAAGATCGGCTACGCCGAGATCGTTCAGGTGGAGGAGGTGAAGGACAAGAAGCCGGAGGAGAAGCAGCCGGAGCCACCCAAGCCCGTGCCATGCTACTACCCAGCTCCTCCCTGCTACTACCCGCCGGCGACGGTGGTCTGCAGCGACGAGCCGAGCCCCTGCTCCATCATGTAAATCAATCATAGAGTTCGATCGATCGAGTTTTGCAGTAATTTCTTCAGCAATTGATCAGTAGTACAGTACATCGATCGAGTGAACGAAATATATCATTTGCTGTTTCCTCACTTAATTGGAAATGAAAACTACAACACTTGGATATATCATTTGCTGTTTCCT] [+] EMBL AK120542 [CTAGAAATCGCAACGCACGCAGCTAGGAAATCTGCAGCGAGCGAGCGAGCTCATCTTGATCGCATTGCATCTGCACTGCAAACGATCGAATCGAATCGAATCGGCCGAGGCATTTCACGCTGAACACGATGACGAAGGTGAGGGAAACTGTTCGATTAGTTGCTTCGCATGCATGCAGCTTAATTAGTTTTGATGATCCACTGATGAATCAGTTTCTTATTGGGGGCGTGGTTGAATAATGCAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCCATGGCGCTGGTGGCGAGGGCGTCCGGCGTGAACTCGATGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACCCGGTCTGCCTCGTCGCCTGCCTCCGCAGGAAGATCGGCTACGCCGAGATCGTTCAGGTGGAGGAGGTGAAGGACAAGAAGCCGGAGGAGAAGCAGCCGGAGCCACCCAAGCCCGTGCCATGCTACTACCCAGCTCCTCCCTGCTACTACCCGCCGGCGACGGTGGTCTGCAGCGACGAGCCGAGCCCCTGCTCCATCATGTAAATCAATCATAGAGTTCGATCGATCGAGTTTTGCAGTAATTTCTTCAGCAATTGATCAGTAGTACAGTACATCGATCGAGTGAACGAAATATATCATTTGCTGTTTCCTCACTTAATTGGAAATGAAAACTACAACACTTGGATATATCATTTGCTGTTTCCT] consensusID : consensus_9029#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 705 fasta sequence [GCTCAGCTAGCTACAATCGCAAATAGCTGCAGCGATCGAGCGAATATTGATCGTGCTCGATCATCTTAGCCGCATTGCAAACGATCGAATCGATCGGCCGATAGCCTTTCTCGTTGGCATTTTATTTCAAGCAGAACACGATGAAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCGATGAAGCTGGTGGTGATGGCCTCCGGCGTGAGCTCGGTGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGGAGAAGAAG-CCGGAGGAGAAGAAGCCGGAGCCGTGCTACTGCCCTCATCCCTGCTACTACCACCACCACTACGGTGGGATACCGGTGGCCGTCGGCGACCAGCCGAGCGACCCCTGCTCCATCATGTAATCATATATAGTCACACAGATCGATCGAATTTTGCAGTGATTTCTTCAGCGATTTGGTATGGCTATGTACAAAGAAATAGTAGGAGTGGTAGATATACTATACTACTATATCTTTGTGGGGCTTCCTTCGCCTTGTTTAAATCCAAACTTAATTGGAAATGAAAACTTACTATAATGTTCAGTAGCAAAAAAAAAAA] [+] EMBL AK062816 [GCTCAGCTAGCTACAATCGCAAATAGCTGCAGCGATCGAGCGAATATTGATCGTGCTCGATCATCTTAGCCGCATTGCAAACGATCGAATCGATCGGCCGATAGCCTTTCTCGTTGGCATTTTATTTCAAGCAGAACACGATGAAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCGATGAAGCTGGTGGTGATGGCCTCCGGCGTGAGCTCGGTGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGGAGAAGAAG CCGGAGGAGAAGAAGCCGGAGCCGTGCTACTGCCCTCATCCCTGCTACTACCACCACCACTACGGTGGGATACCGGTGGCCGTCGGCGACCAGCCGAGCGACCCCTGCTCCATCATGTAATCATATATAGTCACACAGATCGATCGAATTTTGCAGTGATTTCTTCAGCGATTTGGTATGGCTATGTACAAAGAAATAGTAGGAGTGGTAGATATACTATACTACTATATCTTTGTGGGGCTTCCTTCGCCTTGTTTAAATCCAAACTTAATTGGAAATGAAAACTTACTATAAT ] [+] EMBL AU057754 [ TGCAGCGATCGAGCGAATATTGATCGTGCTCGATCATCTTAGCCGCATTGCAAACGATCGAATCGATCGGCCGATAGCCTTTCTCGTTGGCATTTTATTTCAAGCAGAACACGATGAAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCGATGAAGCTGGTGGTGATGGCCTCCGGCGTGAGCTCGGTGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGGAGAAGAAG CCGGAGGAGAAGAAGCCGGAGCCGTGCTACTGCCCTCATCCCTGCTACTACCACCACCACTACGGTGGGATACCGGTGGCCGTC ] [+] EMBL AU174873 [ TGCAGCGATCGAGCGAATATTGATCGTGCTCGATCATCTTAGCCGCATTGCAAACGATCGAATCGATCGGCCGATAGCCTTTCTCGTTGGCATTTTATTTCAAGCAGAACACGATGAAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCGATGAAGCTGGTGGTGATGGCCTCCGGCGTGAGCTCGGTGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGGAGAAGAAGCCCGGAGGAGAAGAAGCCGGAGCCGNGCTACTG ] [+] EMBL AU057755 [ TGAGCTCGGTGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGGAGAAGAAG CCGGAGGAGAAGAAGCCGGAGCCGTGCTACTGCCCTCATCCCTGCTACTACCACCACCACTACGGTGGGATACCGGTGGCCGTCGGCGACCAGCCGAGCGACCCCTGCTCCATCATGTAATCATATATAGTCACACAGATCGATCGAATTTTGCAGTGATTTCTTCAGCGATTTGGTATGGCTATGTACAAAGAAATAGTAGGAGTGGTAGATATACTATACTACTATATCTTTGTGGGGCTTCCTTCGCCTTGTTTAAATCCAAACTTAATTGGAAATGAAAACTTACTATAATGTTCAGTAGCAAAAAAAAAAA] [+] EMBL AU174872 [ CACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGGAGAAGAAG CCGGAGGAGAAGAAGCCGGAGCCGTGCTACTGCCCTCATCCCTGCTACTACCACCACCACTACGGTGGGATACCGGTGGCCGTCGGCGACCAGCCGAGCGACCCCTGCTCCATCATGTAATCATATATAGTCACACAGATCGATCGAATTTTGCAGTGATTTCTTCAGCGATTTGGTATGGCTATGTACAAAGAAATAGTAGGAGTGGTAGATATACTATACTACTATATCTTTGTGGGGCTTCCTTCGCCTTGTTTAAATCCAAACTTAATTGGAAATGAAAACTTACTATAATGTTCAGTA AAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9029#0 CTAGAAATCGCAACGCACGCAGCTAGGAAATCTGCAGCGAGCGAGCGAGCTCATCTTGAT 60 consensus_9029#1 ------------------------------------------------------------ consensus_9029#0 CGCATTGCATCTGCACTGCAAACGATCGAATCGAATCGAATCGGCCGAGGCATTTCACGC 120 consensus_9029#1 ---------------------------------GCTCAGCTAGCTACAATCGCAAATAGC 27 ** * * * * ** consensus_9029#0 TGAACACGATGACGAAGGTGAGGGAAACTGTTCGATTAGTTGCTTCGCAT-GCATGCAGC 179 consensus_9029#1 TGCA-GCGATCGAGCGAAT-ATTGATCGTGCTCGATCATCTTAGCCGCATTGCAAACGAT 85 ** * **** * * * ** ** ***** * * ***** *** * consensus_9029#0 TTAATTAGTTTTGATGATCCACTGATGAATCAGTTTCTTATTGGGGGCGTGGTTGAATAA 239 consensus_9029#1 CGAATCGATCG-GCCGATAGCCTTTCTCGTTGGCATTTTATTTCAAGCAGAAC---ACGA 141 *** * * *** ** * * * ***** ** * * consensus_9029#0 TGCAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCCA 299 consensus_9029#1 TGAAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCGA 201 ** ******************************************************* * consensus_9029#0 TGGCGCTGGTGGCGAGGGCGTCCGGCGTGAACTCGATGGAGGTCACCGGCGACGGCAAGG 359 consensus_9029#1 TGAAGCTGGTGGTGATGGCCTCCGGCGTGAGCTCGGTGGAGGTCACCGGCGACGGCAAGG 261 ** ******** ** *** ********** **** ************************ consensus_9029#0 ACCGGCTGCAGGTGGTCGGCGACGGCGTCGACCCGGTCTGCCTCGTCGCCTGCCTCCGCA 419 consensus_9029#1 ACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCA 321 ******************************** *** ********** ************ consensus_9029#0 GGAAGATCGGCTACGCCGAGATCGTTCAGGTGGAGGAGGTGAAGGACAAGAAGCCGGAGG 479 consensus_9029#1 AGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGG 381 ********** **** *** **** ******************** ************* consensus_9029#0 AGAAGCAGCCGGAGCCACCCAAGCCCGTGCCATGCTACTACCCAGCTCCTCCCTGCTACT 539 consensus_9029#1 AGAAGAAGCCGGAGGAGAAGAAGCCGGAGCCGTGCTACTGCCCTCATCCCTGCTACTACC 441 ***** ******** ***** * *** ******* *** *** ** **** consensus_9029#0 ACCCGC----CGGCGA-----CGGTGGTCTGCAGCGACGAGCCGAGC---CCCTGCTCCA 587 consensus_9029#1 ACCACCACTACGGTGGGATACCGGTGGCCGTCGGCGACCAGCCGAGCGACCCCTGCTCCA 501 *** * *** * ****** * * ***** ******** ********** consensus_9029#0 TCATGTAAATCAATCATAG--AGTTCGATCGATCGAGTTTTGCAGTAATTTCTTCAGCAA 645 consensus_9029#1 TCATGTAA-TCATATATAGTCACACAGATCGATCGAATTTTGCAGTGATTTCTTCAGCGA 560 ******** *** **** * ********** ********* *********** * consensus_9029#0 TTGATCAGTAGTACAGTACATCGATCGAGTGAACG----AAATATATCAT-TTGCTGTTT 700 consensus_9029#1 TTTGGTA-TGGCTATGTACAAAGAAATAGTAGGAGTGGTAGATATACTATACTACTATAT 619 ** * * * ***** ** *** * * ***** ** * ** * * consensus_9029#0 CCTCA-----CTTAATTGGAAATGA--AAACTACAAC--ACTTGGATAT-ATCATTTGCT 750 consensus_9029#1 CTTTGTGGGGCTTCCTTCGCCTTGTTTAAATCCAAACTTAATTGGAAATGAAAACTTACT 679 * * *** ** * ** *** *** * ***** ** * * ** ** consensus_9029#0 GTTTCCT------------------- 757 consensus_9029#1 ATAATGTTCAGTAGCAAAAAAAAAAA 705 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||