|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1618 fasta sequence
[TTTGCCATGGAAGGGAAACTTTTTAAGGTTAGAATAAAATGGTTGGAAGACTTGATAATTAAACAGGCAGTACCAATATTCCAAGCCACGTACTACTAAATACAAATCCTATTAAGAAAGTTAAGCACCTCCAATCCTGCATGAATATATTTGTGCCATTGCTATTTGACCAGTCAGGTTGGGTTATGACATATGAGAACCTTCACTGTCAGTGCAGCTCAGATCTCCATACATATACATGCTTTGTTTATGCTAGCTCTACGGAACTTTAGTCACTGGACTTTGAAAGTGAAACATACGCCATGGATGGACAGCATGGTCAGATATAGACGACACCAACCGTTCATGTGACGGTCTTAGCATTCTGTCTAGTTACCTTACTAATTTGCTCTGCAAAATTTAAATCTTTAACCTCATTAGCTGTCTTCAGAATCTTCCTTGTATCATGTCCACCATTGCCATCACCTACTGGCTACTGATCTTGTACCAGTCACACTTGGCACCAACTTGTTATGCGCTACTCAAACTAAGCGGTTCTTTAATTACTAGCTCAAAGATAGTATGTTGCTATCTTAAACCTTTTGGTACTAGCCATGCACGCATGCACTTGCATGTTACTACTACAGAGCTAGTTAAACTAATCCTGCATGTGCTGTTTGTTTTGTCCAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCGGTCTTGGCTGAGCACGCTGCACGGCGACCGCGACGCGCAGGCGCGGCGCGAGCAGCGCAAGGGGTGGACGGTGACGATCCACGACCTGTCGGGCTCCCCGGTGGCCATGGCGTCCATGGTGACCCCGTTCGTGCCGTCGCCGGCGGGCTCGGGGCGCGTCTCGCGCGCCAACCCTGGCGCCTGGCTCATCCTGCAGCCCACCGGCGCCGGGCCGGCGAGCTGGAAGCCGTGGGCGCGGCTGGAGGCGTGGCGGGAGCGCGGCCCCGTCGACGCGCTCGGCTACCGGCTCGAGCTGGTGTTCGACTCGGGCCCCACCGAGTGCGCCGTCCCCATCGCCGAGTCGTCCATCAGCACCAAGCGCGGCGGCCAGTTCGTCATCGACCCGGCCACGTTCCCCGTGGGCGCCGCCGGCGCCGCGTGGCCGTTCGCCGGCGGCTTCGTGATGGGCTCCACGGCGGAGGGCGAGGGGAGGGCCAGCCGGCCCACCGTGCAGGTCGGCGTGCAGCACGCCACGTGCATGGGCGACGTGGCGCTGTTCGTCGCGCTCGCCGCCGCCGTCGACCTCTGCATGGACGCCTGCAAGCTCTTCTCGCAGAGGCTCAGGAAGGAGCTGTGCCATGATCAAGAGGACTAGCAGGGAGACGAAACGGAATCAAGTGCATGTACTTGGGGGTTTGGCTTGTGAAGTTGTGATGCATGCGATCACTTTCATGATTGTGATTAAATTAGTTAACTATAGATATTCAATTGTTTCTTGTGAAAGTGATGGCCTGTGGCTGTTTTTAGTTTAGGCTGGGTCGGATCACAAGAAGAGAAACGTATGCTCTATATTCTTTCCTCGCGATATTCTTTTGATTGGTTTTAATTTATATACGTTTCTGTTAAAAAAACCTAAAAG]
[+] EMBL AK110766 [TTTGCCATGGAAGGGAAACTTTTTAAGGTTAGAATAAAATGGTTGGAAGACTTGATAATTAAACAGGCAGTACCAATATTCCAAGCCACGTACTACTAAATACAAATCCTATTAAGAAAGTTAAGCACCTCCAATCCTGCATGAATATATTTGTGCCATTGCTATTTGACCAGTCAGGTTGGGTTATGACATATGAGAACCTTCACTGTCAGTGCAGCTCAGATCTCCATACATATACATGCTTTGTTTATGCTAGCTCTACGGAACTTTAGTCACTGGACTTTGAAAGTGAAACATACGCCATGGATGGACAGCATGGTCAGATATAGACGACACCAACCGTTCATGTGACGGTCTTAGCATTCTGTCTAGTTACCTTACTAATTTGCTCTGCAAAATTTAAATCTTTAACCTCATTAGCTGTCTTCAGAATCTTCCTTGTATCATGTCCACCATTGCCATCACCTACTGGCTACTGATCTTGTACCAGTCACACTTGGCACCAACTTGTTATGCGCTACTCAAACTAAGCGGTTCTTTAATTACTAGCTCAAAGATAGTATGTTGCTATCTTAAACCTTTTGGTACTAGCCATGCACGCATGCACTTGCATGTTACTACTACAGAGCTAGTTAAACTAATCCTGCATGTGCTGTTTGTTTTGTCCAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCGGTCTTGGCTGAGCACGCTGCACGGCGACCGCGACGCGCAGGCGCGGCGCGAGCAGCGCAAGGGGTGGACGGTGACGATCCACGACCTGTCGGGCTCCCCGGTGGCCATGGCGTCCATGGTGACCCCGTTCGTGCCGTCGCCGGCGGGCTCGGGGCGCGTCTCGCGCGCCAACCCTGGCGCCTGGCTCATCCTGCAGCCCACCGGCGCCGGGCCGGCGAGCTGGAAGCCGTGGGCGCGGCTGGAGGCGTGGCGGGAGCGCGGTCCCGTCGACGCGCTCGGCTACCGGCTCGAGCTGGTGTTCGACTCGGGCCCCACCGAGTGCGCCGTCCCCATCGCCGAGTCGTCCATCAGCACCAAGCGCGGCGGCCAGTTCGTCATCGACCCGGCCACGTTCCCCGTGGGCGCCGCCGGCGCCGCGTGGCCGTTCGCCGGCGGCTTCGTGATGGGCTCCACGGCGGAGGGCGAGGGGAGGGCCAGCCGGCCCACCGTGCAGGTCGGCGTGCAGCACGCCACGTGCATGGGCGACGTGGCGCTGTTCGTCGCGCTCGCCGCCGCCGTCGACCTCTGCATGGACGCCTGCAAGCTCTTCTCGCAGAGGCTCAGGAAGGAGCTGTGCCATGATCAAGAGGACTAGCAGGGAGACGAAACGGAATCAAGTGCATGTACTTGGGGGTTTGGCTTGTGAAGTTGTGATGCATGCGATCACTTTCATGATTGTGATAAAATT ]
[-] EMBL CB675403 [ gaCCAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCGGTCTTGGCTGAGCACGCTGCACGGCGACCGCGACGCGCAGGCGCGGCGCGAGCAGCGCAAGGGGTGGACGGTGACGATCCACGACCTGTCGGGCTCCCCGGTGGCCATGGCGTCCATGGTGACCCCGTTCGTGCCGTCGCCGGCGGGCTCGGGGCGCGTCTCGCGCGCCAACCCTGGCGCCTGGCTCATCCTGCAGCCCACCGGCGCCGGGCCGGCGAGCTGGAAGCCGTGGGCGCGGCTGGAGGCGTGGCGGGAGCGCGGCCCCGTCGACGCGCTCGGCTACCGGCTCGAGCTGGTGTTCGACTCGGGCCCCACCGAGTGCGCCGTCCCCATCGCCGAGTCGTCCATCAGCACCAAGCGCGGCGGCCAGTTCGTCATCGACCCGGCCACGTTCCCCGTGGGCGCCGCCGGCGCCGCGTGGCCGTTCGCCGGCGGCTTCGTGATGGGCTCCACGGCGGAGGGCGAGGGGAGGGCCAGCCGGCCCACCGTGCAGGTCGGCGTGCAGCACGCCACGTGCATGGGCGACGTGGCGCTGTTCGTCGCGCTCGCCGCCGCCGTCGACCTCTGCATGGACGCCTGCAAGCTCTTCTCGCAGAGGCTCAGGAAGGAGCTGTGCCATGATCAAGAGGACTAGCAGGGAGACGAAACGGAATCAAGTGCATGTACTTGGGGGTTTGGCTTGTGAAGTTGTGATGCATGCGATCACTTTCATGATTGTGATTAAATTAGTTAACTATAGATAT ]
[-] EMBL CB642018 [ GCGAGCTGGAAGCCGTGGGCGCGGCTGGAGGCGTGGCGGGAGCGCGGCCCCGTCGACGCGCTCGGCTACCGGCTCGAGCTGGTGTTCGACTCGGGCCCCACCGAGTGCGCCGTCCCCATCGCCGAGTCGTCCATCAGCACCAAGCGCGGCGGCCAGTTCGTCATCGACCCGGCCACGTTCCCCGTGGGCGCCGCCGGCGCCGCGTGGCCGTTCGCCGGCGGCTTCGTGATGGGCTCCACGGCGGAGGGCGAGGGGAGGGCCAGCCGGCCCACCGTGCAGGTCGGCGTGCAGCACGCCACGTGCATGGGCGACGTGGCGCTGTTCGTCGCGCTCGCCGCCGCCGTCGACCTCTGCATGGACGCCTGCAAGCTCTTCTCGCAGAGGCTCAGGAAGGAGCTGTGCCATGATCAAGAGGACTAGCAGGGAGACGAAACGGAATCAAGTGCATGTACTTGGGGGTTTGGCTTGTGAAGTTGTGATGCATGCGATCACTTTCATGATTGTGATTAAATTAGTTAACTATAGATATTCAATTGTTTCTTGTGAAAGTGATGGCCTGTGGCTGTTTTTAGTTTAGGCTGGGTCGGATCACAAGAAGAGAAACGTATGCTCTATATTCTTTCCTCGCGATATTCTTTTGATTGGTTTTAATTTATATACGTTTCTGTTAAAAAAACCTAAAAG]
[+] EMBL CA765452 [ GGAATCAAGTGCATGTACTTGGGGGTTTGGCTTGTTAAGTTGTGATGCATGCGATCACTTTCATGATTGTGATTAAATTAGTTAACTA ]
consensusID : consensus_9030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 840 fasta sequence
[GACAAACCGGGCCGGGGTGATCGAGCGCAGCTAGCGCGCGGCGCCATGGACCCCTGCGCGTTCGTCCGCCTCACCGTGGACCAGCTCCTCCTCAAGCTGCCCTCCGTGCCGCGCCCGAGCTCCGGCGCCGCCGGCGTCCACCCTTCCACCTCCCCATGCTTCTGCACGCTCCACCTCCAGGACCACCCCTCCGCCGGCTCCCACTCCCGCACCGCGCAGCTGCCGCTCGCGTCATCCGAGTCCCCGGGCCCCGTCGCCGCCGGGGAGCCCGTGGTGATAAGCCTCGACGCCGCCGCGGTGCAGAGGCTCTCGGCGCGCCCCGCCGCCGAGCTCGTCGTGTCCGTGCACGCCGGGCAGAAGGGGAACGCCGGCTGCGGCATGAGCGCCGGCCGCGCGCTGGGCAGGGTGCGGGTGCCCGTCGACGTGGCGCGCGCCGCGGCCGGGGAGACCGTCGTCGCGCGCGACGGGTGGGTGGACGTGGGCAAGCCGGCCGCGGCGGCGGCGTCCCACGGCCACGCGCGCGCGCAGATCCACATGGTCGTGCGGGCCGAGCCCGACCCACGGTACGTCTTCCAGTTCGGCGGCGAGCCGGAGTGCGGGCCGGTCGTCTACCAGGTGCCCGGGGGCGCCGCCGGCGGTGGCCAGCGGCAGCCGGTGTTCACCTGCCGGTTCAGCGCTGGGCGGAGGGCAACCAGGACCAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCGGTCTTGGCTGAGCACGCTGCACGGCGACCGCGACGCGCAGGCGCGGCGCGAGCAGCGCAAGGGGTGGACGGTGACGATCCACGACCTG]
[+] EMBL CB642017 [GACAAACCGGGCCGGGGTGATCGAGCGCAGCTAGCGCGCGGCGCCATGGACCCCTGCGCGTTCGTCCGCCTCACCGTGGACCAGCTCCTCCTCAAGCTGCCCTCCGTGCCGCGCCCGAGCTCCGGCGCCGCCGGCGTCCACCCTTCCACCTCCCCATGCTTCTGCACGCTCCACCTCCAGGACCACCCCTCCGCCGGCTCCCACTCCCGCACCGCGCAGCTGCCGCTCGCGTCATCCGAGTCCCCGGGCCCCGTCGCCGCCGGGGAGCCCGTGGTGATAAGCCTCGACGCCGCCGCGGTGCAGAGGCTCTCGGCGCGCCCCGCCGCCGAGCTCGTCGTGTCCGTGCACGCCGGGCAGAAGGGGAACGCCGGCTGCGGCATGAGCGCCGGCCGCGCGCTGGGCAGGGTGCGGGTGCCCGTCGACGTGGCGCGCGCCGCGGCCGGGGAGACCGTCGTCGCGCGCGACGGGTGGGTGGACGTGGGCAAGCCGGCCGCGGCGGCGGCGTCCCACGGCCACGCGCGCGCGCAGATCCACATGGTCGTGCGGGCCGAGCCCGACCCACGGTACGTCTTCCAGTTCGGCGGCGAGCCGGAGTGCGGGCCGGTCGTCTACCAGGTGC ]
[+] EMBL CB675402 [ GGGCCGGGGTGATCGAGCGCAGCTAGCGCGCGGCGCCATGGACCCCTGCGCGTTCGTCCGCCTCACCGTGGACCAGCTCCTCCTCAAGCTGCCCTCCGTGCCGCGCCCGAGCTCCGGCGCCGCCGGCGTCCACCCTTCCACCTCCCCATGCTTCTGCACGCTCCACCTCCAGGACCACCCCTCCGCCGGCTCCCACTCCCGCACCGCGCAGCTGCCGCTCGCGTCATCCGAGTCCCCGGGCCCCGTCGCCGCCGGGGAGCCCGTGGTGATAAGCCTCGACGCCGCCGCGGTGCAGAGGCTCTCGGCGCGCCCCGCCGCCGAGCTCGTCGTGTCCGTGCACGCCGGGCAGAAGGGGAACGCCGGCTGCGGCATGAGCGCCGGCCGCGCGCTGGGCAGGGTGCGGGTGCCCGTCGACGTGGCGCGCGCCGCGGCCGGGGAGACCGTCGTCGCGCGCGACGGGTGGGTGGACGTGGGCAAGCCGGCCGCGGCGGCGGCGTCCCACGGCCACGCGCGCGCGCAGATCCACATGGTCGTGCGGGCCGAGCCCGACCCACGGTACGTCTTCCAGTTCGGCGGCGAGCCGGAGTGCGGGCCGGTCGTCTACCAGGTGCCCGGGGGCGCCGCCGGCGGTGGCCAGCGGCAGCCGGTGTTCACCTGCCGGTTCAGCGCTGGGCGGAGGGCAACCAGGACCAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCGGTCTTGGCTGAGCACGCTGCACGGCGACCGCGACGCGCAGGCGCGGCGCGAGCAGCGCAAGGGGTGGACGGTGACGATCCACGACCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9030#0 TTTGCCATGGAAGGGAAACTTTTTAAGGTTAGAATAAAATGGTTGGAAGACTTGATAATT 60
consensus_9030#1 ------------------------------------------------------------
consensus_9030#0 AAACAGGCAGTACCAATATTCCAAGCCACGTACTACTAAATACAAATCCTATTAAGAAAG 120
consensus_9030#1 ------------------------------------------------------------
consensus_9030#0 TTAAGCACCTCCAATCCTGCATGAATATATTTGTGCCATTGCTATTTGACCAGTCAGGTT 180
consensus_9030#1 ------------------------------------------------------------
consensus_9030#0 GGGTTATGACATATGAGAACCTTCACTGTCAGTGCAGCTCAGATCTCCATACATATACAT 240
consensus_9030#1 ------------------------------------------------------------
consensus_9030#0 GCTTTGTTTATGCTAGCTCTACGGAACTTTAGTCACTGGACTTTGAAAGTGAAACATACG 300
consensus_9030#1 ------------------------------------------------------------
consensus_9030#0 CCATGGATGGACAGCATGGTCAGATATAGACGACACCAACCGTTCATGTGACGGTCTTAG 360
consensus_9030#1 ------------------------------------------------------------
consensus_9030#0 CATTCTGTCTAGTTACCTTACTAATTTGCTCTGCAAAATTTAAATCTTTAACCTCATTAG 420
consensus_9030#1 ------------------------------------------------------------
consensus_9030#0 CTGTCTTCAGAATCTTCCTTGTATCATGTCCACCATTGCCATCACCTACTGGCTACTGAT 480
consensus_9030#1 ------GACAAACCGGGCCGGGGTGAT--CGAGCGCAGCTAGCGCGCGGCG-CCATGGAC 51
** * * * * ** * * * ** * * * * * * **
consensus_9030#0 CTTGTACCAGTCACACTTGGCACCAACTTGTTATGCGCTACTCAAACTAAGCGGTTCTTT 540
consensus_9030#1 CCCTGCGCGTTCG---TCCGCCTCACCGTGG-ACCAGCTCCTCC--TCAAGCTGCCCTCC 105
* * ** * ** ** * ** * *** *** **** * **
consensus_9030#0 AATTACTAGCTCAAAGATAGTATGTTGCTATCTTAAACCTTTTGGTACTAGCCATGCACG 600
consensus_9030#1 G--TGCCGCGCCCGAGCTCCGGCGCCGCCGGCGTCCACCCTT---------CCACCTCCC 154
* * * ** * * ** * * *** ** *** *
consensus_9030#0 CATGCACTTGCATGTTACTACTACAGAGCTAGTTAAACTAATCCTGCATGTGCTGTTTGT 660
consensus_9030#1 CATGCTTCTGCACGCTCCACCTCCAGG---------ACCACCCCTCCGCCGGCTCCCACT 205
***** **** * * * ** *** ** * *** * *** *
consensus_9030#0 TTTGT-CCAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGC 719
consensus_9030#1 CCCGCACCGCGCAGCTGCCGCTCGCGTCATCCGAGTCCCCGGGCCCCGTCGCCGCCGGGG 265
* ** * ** ** * *** *** * * * * ** ** * *
consensus_9030#0 GGTCTTGGCTGAGCACGCTGCACGGCGACCGCGACGCGCAGGCGCGGCGCGAGCAGCGCA 779
consensus_9030#1 AGCCCGTGGTGA-TAAGCCTCGACGCCGCCGCGGTGCAGAGGCTCTCGGCGCGCCCCGCC 324
* * * *** * ** * ** ***** ** **** * *** ** ***
consensus_9030#0 AGGGGTGGACGGTGACGATCCACGACCTGTCGGGCTCCCCGGTGGCCATGGCGTCCATGG 839
consensus_9030#1 GCCGA--GCTCGTCGTG-TCCGTG-CACGCCGGGCAGAAGGGGAACGCCGGCTGCGGCAT 380
* * ** * *** * * * ***** ** * *** *
consensus_9030#0 TGACCCCGTTCGTGCCGTCGCCGGCGGGCTCGGGGCGCGTCTCGCGCGCCAACCCTGGCG 899
consensus_9030#1 GAGCGCCGGCCGCGC-------GCTGGGCAGGGTGCGGGT---GCCCGTCGACG-TGGCG 429
* *** ** ** * **** ** *** ** ** ** * ** *****
consensus_9030#0 CCTGGCTCATCCTGCAGCCCACCGGCGCCGGGC-CGGCGAGCTGGAAGCCGTGGGCGCGG 958
consensus_9030#1 CGCGCCGCGGCCGGGGAG--ACCGTCGTCGCGCGCGACGGGTGGGTGGACGTGGGCAAGC 487
* * * * ** * **** ** ** ** ** ** * ** * ******* *
consensus_9030#0 CTGGAGGCGTGGCGGGAGCGCGGCCCCGTCGACGCGCTCGGCTACCGGCTCGAGCTGGTG 1018
consensus_9030#1 C---GGCCGCGGCGGCGGCGT---CCCACGGCCACGCGCGCGCGCAGATCCACATGGTCG 541
* * ** ***** *** *** * * *** ** * * * * *
consensus_9030#0 TTCGACTCGGGCCCCACCGAGTGCGCCGTCCCCATCGCCGAGTCGTCCATCAGCACCAAG 1078
consensus_9030#1 TGCGGGCCGAGCCCGACCCACGGTAC-------GTCTTCCAGT------TCGGCGGCGAG 588
* ** ** **** *** * * * ** * *** ** ** * **
consensus_9030#0 CGCGGCGGCCAGTTCGTCATCGACCCGGCCACGTTCCCCGTGGGCGCCGCCGGCGCCGCG 1138
consensus_9030#1 CCGGAGTGCGGGCCGGTCGTCTACCAGG------TGCCCGGGGGCGCCGCCGGCGGTG-G 641
* * ** * *** ** *** ** * **** ************** * *
consensus_9030#0 TGGCCGTTCGCCGGCGGCTTCGTGATGGGCTCCACGGCGGAGGGCGAGGGGAGGGCCAGC 1198
consensus_9030#1 CCAGCGGCAGCCGGTGTTCACCTGCCGGTT----CAGCGCTGGGCGGAGGGCAACCAGGA 697
** ***** * * ** ** * *** ***** *** * *
consensus_9030#0 CGGCCCACCGTGCAGGTCGG---CGTGCAGCACGCCACGTGCATGGGCGACGTGGCGCTG 1255
consensus_9030#1 C--CAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCGGTC 755
* * * *** * ***** *** ** ** * * * * ** * *** *
consensus_9030#0 TTCGTCGCGCTCGCCGCCGCCGTCGACCTCTGCATGGACGCCTGCAAGCTCTTCTCGCAG 1315
consensus_9030#1 TTGGCTGAGCACGCTGCA--CGGCGACCGCGACGCGCAGGCGCG-GCGCGAGCAGCGCAA 812
** * * ** *** ** ** ***** * * * * ** * ** ****
consensus_9030#0 AGGCTCAGGAAGGAGCTGTGCCATGATCAAGAGGACTAGCAGGGAGACGAAACGGAATCA 1375
consensus_9030#1 GGGGT--GGACGGTGACGATCCACGACCTG------------------------------ 840
** * *** ** * * *** ** *
consensus_9030#0 AGTGCATGTACTTGGGGGTTTGGCTTGTGAAGTTGTGATGCATGCGATCACTTTCATGAT 1435
consensus_9030#1 ------------------------------------------------------------
consensus_9030#0 TGTGATTAAATTAGTTAACTATAGATATTCAATTGTTTCTTGTGAAAGTGATGGCCTGTG 1495
consensus_9030#1 ------------------------------------------------------------
consensus_9030#0 GCTGTTTTTAGTTTAGGCTGGGTCGGATCACAAGAAGAGAAACGTATGCTCTATATTCTT 1555
consensus_9030#1 ------------------------------------------------------------
consensus_9030#0 TCCTCGCGATATTCTTTTGATTGGTTTTAATTTATATACGTTTCTGTTAAAAAAACCTAA 1615
consensus_9030#1 ------------------------------------------------------------
consensus_9030#0 AAG 1618
consensus_9030#1 ---
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||