These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1618 fasta sequence [TTTGCCATGGAAGGGAAACTTTTTAAGGTTAGAATAAAATGGTTGGAAGACTTGATAATTAAACAGGCAGTACCAATATTCCAAGCCACGTACTACTAAATACAAATCCTATTAAGAAAGTTAAGCACCTCCAATCCTGCATGAATATATTTGTGCCATTGCTATTTGACCAGTCAGGTTGGGTTATGACATATGAGAACCTTCACTGTCAGTGCAGCTCAGATCTCCATACATATACATGCTTTGTTTATGCTAGCTCTACGGAACTTTAGTCACTGGACTTTGAAAGTGAAACATACGCCATGGATGGACAGCATGGTCAGATATAGACGACACCAACCGTTCATGTGACGGTCTTAGCATTCTGTCTAGTTACCTTACTAATTTGCTCTGCAAAATTTAAATCTTTAACCTCATTAGCTGTCTTCAGAATCTTCCTTGTATCATGTCCACCATTGCCATCACCTACTGGCTACTGATCTTGTACCAGTCACACTTGGCACCAACTTGTTATGCGCTACTCAAACTAAGCGGTTCTTTAATTACTAGCTCAAAGATAGTATGTTGCTATCTTAAACCTTTTGGTACTAGCCATGCACGCATGCACTTGCATGTTACTACTACAGAGCTAGTTAAACTAATCCTGCATGTGCTGTTTGTTTTGTCCAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCGGTCTTGGCTGAGCACGCTGCACGGCGACCGCGACGCGCAGGCGCGGCGCGAGCAGCGCAAGGGGTGGACGGTGACGATCCACGACCTGTCGGGCTCCCCGGTGGCCATGGCGTCCATGGTGACCCCGTTCGTGCCGTCGCCGGCGGGCTCGGGGCGCGTCTCGCGCGCCAACCCTGGCGCCTGGCTCATCCTGCAGCCCACCGGCGCCGGGCCGGCGAGCTGGAAGCCGTGGGCGCGGCTGGAGGCGTGGCGGGAGCGCGGCCCCGTCGACGCGCTCGGCTACCGGCTCGAGCTGGTGTTCGACTCGGGCCCCACCGAGTGCGCCGTCCCCATCGCCGAGTCGTCCATCAGCACCAAGCGCGGCGGCCAGTTCGTCATCGACCCGGCCACGTTCCCCGTGGGCGCCGCCGGCGCCGCGTGGCCGTTCGCCGGCGGCTTCGTGATGGGCTCCACGGCGGAGGGCGAGGGGAGGGCCAGCCGGCCCACCGTGCAGGTCGGCGTGCAGCACGCCACGTGCATGGGCGACGTGGCGCTGTTCGTCGCGCTCGCCGCCGCCGTCGACCTCTGCATGGACGCCTGCAAGCTCTTCTCGCAGAGGCTCAGGAAGGAGCTGTGCCATGATCAAGAGGACTAGCAGGGAGACGAAACGGAATCAAGTGCATGTACTTGGGGGTTTGGCTTGTGAAGTTGTGATGCATGCGATCACTTTCATGATTGTGATTAAATTAGTTAACTATAGATATTCAATTGTTTCTTGTGAAAGTGATGGCCTGTGGCTGTTTTTAGTTTAGGCTGGGTCGGATCACAAGAAGAGAAACGTATGCTCTATATTCTTTCCTCGCGATATTCTTTTGATTGGTTTTAATTTATATACGTTTCTGTTAAAAAAACCTAAAAG] [+] EMBL AK110766 [TTTGCCATGGAAGGGAAACTTTTTAAGGTTAGAATAAAATGGTTGGAAGACTTGATAATTAAACAGGCAGTACCAATATTCCAAGCCACGTACTACTAAATACAAATCCTATTAAGAAAGTTAAGCACCTCCAATCCTGCATGAATATATTTGTGCCATTGCTATTTGACCAGTCAGGTTGGGTTATGACATATGAGAACCTTCACTGTCAGTGCAGCTCAGATCTCCATACATATACATGCTTTGTTTATGCTAGCTCTACGGAACTTTAGTCACTGGACTTTGAAAGTGAAACATACGCCATGGATGGACAGCATGGTCAGATATAGACGACACCAACCGTTCATGTGACGGTCTTAGCATTCTGTCTAGTTACCTTACTAATTTGCTCTGCAAAATTTAAATCTTTAACCTCATTAGCTGTCTTCAGAATCTTCCTTGTATCATGTCCACCATTGCCATCACCTACTGGCTACTGATCTTGTACCAGTCACACTTGGCACCAACTTGTTATGCGCTACTCAAACTAAGCGGTTCTTTAATTACTAGCTCAAAGATAGTATGTTGCTATCTTAAACCTTTTGGTACTAGCCATGCACGCATGCACTTGCATGTTACTACTACAGAGCTAGTTAAACTAATCCTGCATGTGCTGTTTGTTTTGTCCAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCGGTCTTGGCTGAGCACGCTGCACGGCGACCGCGACGCGCAGGCGCGGCGCGAGCAGCGCAAGGGGTGGACGGTGACGATCCACGACCTGTCGGGCTCCCCGGTGGCCATGGCGTCCATGGTGACCCCGTTCGTGCCGTCGCCGGCGGGCTCGGGGCGCGTCTCGCGCGCCAACCCTGGCGCCTGGCTCATCCTGCAGCCCACCGGCGCCGGGCCGGCGAGCTGGAAGCCGTGGGCGCGGCTGGAGGCGTGGCGGGAGCGCGGTCCCGTCGACGCGCTCGGCTACCGGCTCGAGCTGGTGTTCGACTCGGGCCCCACCGAGTGCGCCGTCCCCATCGCCGAGTCGTCCATCAGCACCAAGCGCGGCGGCCAGTTCGTCATCGACCCGGCCACGTTCCCCGTGGGCGCCGCCGGCGCCGCGTGGCCGTTCGCCGGCGGCTTCGTGATGGGCTCCACGGCGGAGGGCGAGGGGAGGGCCAGCCGGCCCACCGTGCAGGTCGGCGTGCAGCACGCCACGTGCATGGGCGACGTGGCGCTGTTCGTCGCGCTCGCCGCCGCCGTCGACCTCTGCATGGACGCCTGCAAGCTCTTCTCGCAGAGGCTCAGGAAGGAGCTGTGCCATGATCAAGAGGACTAGCAGGGAGACGAAACGGAATCAAGTGCATGTACTTGGGGGTTTGGCTTGTGAAGTTGTGATGCATGCGATCACTTTCATGATTGTGATAAAATT ] [-] EMBL CB675403 [ gaCCAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCGGTCTTGGCTGAGCACGCTGCACGGCGACCGCGACGCGCAGGCGCGGCGCGAGCAGCGCAAGGGGTGGACGGTGACGATCCACGACCTGTCGGGCTCCCCGGTGGCCATGGCGTCCATGGTGACCCCGTTCGTGCCGTCGCCGGCGGGCTCGGGGCGCGTCTCGCGCGCCAACCCTGGCGCCTGGCTCATCCTGCAGCCCACCGGCGCCGGGCCGGCGAGCTGGAAGCCGTGGGCGCGGCTGGAGGCGTGGCGGGAGCGCGGCCCCGTCGACGCGCTCGGCTACCGGCTCGAGCTGGTGTTCGACTCGGGCCCCACCGAGTGCGCCGTCCCCATCGCCGAGTCGTCCATCAGCACCAAGCGCGGCGGCCAGTTCGTCATCGACCCGGCCACGTTCCCCGTGGGCGCCGCCGGCGCCGCGTGGCCGTTCGCCGGCGGCTTCGTGATGGGCTCCACGGCGGAGGGCGAGGGGAGGGCCAGCCGGCCCACCGTGCAGGTCGGCGTGCAGCACGCCACGTGCATGGGCGACGTGGCGCTGTTCGTCGCGCTCGCCGCCGCCGTCGACCTCTGCATGGACGCCTGCAAGCTCTTCTCGCAGAGGCTCAGGAAGGAGCTGTGCCATGATCAAGAGGACTAGCAGGGAGACGAAACGGAATCAAGTGCATGTACTTGGGGGTTTGGCTTGTGAAGTTGTGATGCATGCGATCACTTTCATGATTGTGATTAAATTAGTTAACTATAGATAT ] [-] EMBL CB642018 [ GCGAGCTGGAAGCCGTGGGCGCGGCTGGAGGCGTGGCGGGAGCGCGGCCCCGTCGACGCGCTCGGCTACCGGCTCGAGCTGGTGTTCGACTCGGGCCCCACCGAGTGCGCCGTCCCCATCGCCGAGTCGTCCATCAGCACCAAGCGCGGCGGCCAGTTCGTCATCGACCCGGCCACGTTCCCCGTGGGCGCCGCCGGCGCCGCGTGGCCGTTCGCCGGCGGCTTCGTGATGGGCTCCACGGCGGAGGGCGAGGGGAGGGCCAGCCGGCCCACCGTGCAGGTCGGCGTGCAGCACGCCACGTGCATGGGCGACGTGGCGCTGTTCGTCGCGCTCGCCGCCGCCGTCGACCTCTGCATGGACGCCTGCAAGCTCTTCTCGCAGAGGCTCAGGAAGGAGCTGTGCCATGATCAAGAGGACTAGCAGGGAGACGAAACGGAATCAAGTGCATGTACTTGGGGGTTTGGCTTGTGAAGTTGTGATGCATGCGATCACTTTCATGATTGTGATTAAATTAGTTAACTATAGATATTCAATTGTTTCTTGTGAAAGTGATGGCCTGTGGCTGTTTTTAGTTTAGGCTGGGTCGGATCACAAGAAGAGAAACGTATGCTCTATATTCTTTCCTCGCGATATTCTTTTGATTGGTTTTAATTTATATACGTTTCTGTTAAAAAAACCTAAAAG] [+] EMBL CA765452 [ GGAATCAAGTGCATGTACTTGGGGGTTTGGCTTGTTAAGTTGTGATGCATGCGATCACTTTCATGATTGTGATTAAATTAGTTAACTA ] consensusID : consensus_9030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 840 fasta sequence [GACAAACCGGGCCGGGGTGATCGAGCGCAGCTAGCGCGCGGCGCCATGGACCCCTGCGCGTTCGTCCGCCTCACCGTGGACCAGCTCCTCCTCAAGCTGCCCTCCGTGCCGCGCCCGAGCTCCGGCGCCGCCGGCGTCCACCCTTCCACCTCCCCATGCTTCTGCACGCTCCACCTCCAGGACCACCCCTCCGCCGGCTCCCACTCCCGCACCGCGCAGCTGCCGCTCGCGTCATCCGAGTCCCCGGGCCCCGTCGCCGCCGGGGAGCCCGTGGTGATAAGCCTCGACGCCGCCGCGGTGCAGAGGCTCTCGGCGCGCCCCGCCGCCGAGCTCGTCGTGTCCGTGCACGCCGGGCAGAAGGGGAACGCCGGCTGCGGCATGAGCGCCGGCCGCGCGCTGGGCAGGGTGCGGGTGCCCGTCGACGTGGCGCGCGCCGCGGCCGGGGAGACCGTCGTCGCGCGCGACGGGTGGGTGGACGTGGGCAAGCCGGCCGCGGCGGCGGCGTCCCACGGCCACGCGCGCGCGCAGATCCACATGGTCGTGCGGGCCGAGCCCGACCCACGGTACGTCTTCCAGTTCGGCGGCGAGCCGGAGTGCGGGCCGGTCGTCTACCAGGTGCCCGGGGGCGCCGCCGGCGGTGGCCAGCGGCAGCCGGTGTTCACCTGCCGGTTCAGCGCTGGGCGGAGGGCAACCAGGACCAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCGGTCTTGGCTGAGCACGCTGCACGGCGACCGCGACGCGCAGGCGCGGCGCGAGCAGCGCAAGGGGTGGACGGTGACGATCCACGACCTG] [+] EMBL CB642017 [GACAAACCGGGCCGGGGTGATCGAGCGCAGCTAGCGCGCGGCGCCATGGACCCCTGCGCGTTCGTCCGCCTCACCGTGGACCAGCTCCTCCTCAAGCTGCCCTCCGTGCCGCGCCCGAGCTCCGGCGCCGCCGGCGTCCACCCTTCCACCTCCCCATGCTTCTGCACGCTCCACCTCCAGGACCACCCCTCCGCCGGCTCCCACTCCCGCACCGCGCAGCTGCCGCTCGCGTCATCCGAGTCCCCGGGCCCCGTCGCCGCCGGGGAGCCCGTGGTGATAAGCCTCGACGCCGCCGCGGTGCAGAGGCTCTCGGCGCGCCCCGCCGCCGAGCTCGTCGTGTCCGTGCACGCCGGGCAGAAGGGGAACGCCGGCTGCGGCATGAGCGCCGGCCGCGCGCTGGGCAGGGTGCGGGTGCCCGTCGACGTGGCGCGCGCCGCGGCCGGGGAGACCGTCGTCGCGCGCGACGGGTGGGTGGACGTGGGCAAGCCGGCCGCGGCGGCGGCGTCCCACGGCCACGCGCGCGCGCAGATCCACATGGTCGTGCGGGCCGAGCCCGACCCACGGTACGTCTTCCAGTTCGGCGGCGAGCCGGAGTGCGGGCCGGTCGTCTACCAGGTGC ] [+] EMBL CB675402 [ GGGCCGGGGTGATCGAGCGCAGCTAGCGCGCGGCGCCATGGACCCCTGCGCGTTCGTCCGCCTCACCGTGGACCAGCTCCTCCTCAAGCTGCCCTCCGTGCCGCGCCCGAGCTCCGGCGCCGCCGGCGTCCACCCTTCCACCTCCCCATGCTTCTGCACGCTCCACCTCCAGGACCACCCCTCCGCCGGCTCCCACTCCCGCACCGCGCAGCTGCCGCTCGCGTCATCCGAGTCCCCGGGCCCCGTCGCCGCCGGGGAGCCCGTGGTGATAAGCCTCGACGCCGCCGCGGTGCAGAGGCTCTCGGCGCGCCCCGCCGCCGAGCTCGTCGTGTCCGTGCACGCCGGGCAGAAGGGGAACGCCGGCTGCGGCATGAGCGCCGGCCGCGCGCTGGGCAGGGTGCGGGTGCCCGTCGACGTGGCGCGCGCCGCGGCCGGGGAGACCGTCGTCGCGCGCGACGGGTGGGTGGACGTGGGCAAGCCGGCCGCGGCGGCGGCGTCCCACGGCCACGCGCGCGCGCAGATCCACATGGTCGTGCGGGCCGAGCCCGACCCACGGTACGTCTTCCAGTTCGGCGGCGAGCCGGAGTGCGGGCCGGTCGTCTACCAGGTGCCCGGGGGCGCCGCCGGCGGTGGCCAGCGGCAGCCGGTGTTCACCTGCCGGTTCAGCGCTGGGCGGAGGGCAACCAGGACCAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCGGTCTTGGCTGAGCACGCTGCACGGCGACCGCGACGCGCAGGCGCGGCGCGAGCAGCGCAAGGGGTGGACGGTGACGATCCACGACCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9030#0 TTTGCCATGGAAGGGAAACTTTTTAAGGTTAGAATAAAATGGTTGGAAGACTTGATAATT 60 consensus_9030#1 ------------------------------------------------------------ consensus_9030#0 AAACAGGCAGTACCAATATTCCAAGCCACGTACTACTAAATACAAATCCTATTAAGAAAG 120 consensus_9030#1 ------------------------------------------------------------ consensus_9030#0 TTAAGCACCTCCAATCCTGCATGAATATATTTGTGCCATTGCTATTTGACCAGTCAGGTT 180 consensus_9030#1 ------------------------------------------------------------ consensus_9030#0 GGGTTATGACATATGAGAACCTTCACTGTCAGTGCAGCTCAGATCTCCATACATATACAT 240 consensus_9030#1 ------------------------------------------------------------ consensus_9030#0 GCTTTGTTTATGCTAGCTCTACGGAACTTTAGTCACTGGACTTTGAAAGTGAAACATACG 300 consensus_9030#1 ------------------------------------------------------------ consensus_9030#0 CCATGGATGGACAGCATGGTCAGATATAGACGACACCAACCGTTCATGTGACGGTCTTAG 360 consensus_9030#1 ------------------------------------------------------------ consensus_9030#0 CATTCTGTCTAGTTACCTTACTAATTTGCTCTGCAAAATTTAAATCTTTAACCTCATTAG 420 consensus_9030#1 ------------------------------------------------------------ consensus_9030#0 CTGTCTTCAGAATCTTCCTTGTATCATGTCCACCATTGCCATCACCTACTGGCTACTGAT 480 consensus_9030#1 ------GACAAACCGGGCCGGGGTGAT--CGAGCGCAGCTAGCGCGCGGCG-CCATGGAC 51 ** * * * * ** * * * ** * * * * * * ** consensus_9030#0 CTTGTACCAGTCACACTTGGCACCAACTTGTTATGCGCTACTCAAACTAAGCGGTTCTTT 540 consensus_9030#1 CCCTGCGCGTTCG---TCCGCCTCACCGTGG-ACCAGCTCCTCC--TCAAGCTGCCCTCC 105 * * ** * ** ** * ** * *** *** **** * ** consensus_9030#0 AATTACTAGCTCAAAGATAGTATGTTGCTATCTTAAACCTTTTGGTACTAGCCATGCACG 600 consensus_9030#1 G--TGCCGCGCCCGAGCTCCGGCGCCGCCGGCGTCCACCCTT---------CCACCTCCC 154 * * * ** * * ** * * *** ** *** * consensus_9030#0 CATGCACTTGCATGTTACTACTACAGAGCTAGTTAAACTAATCCTGCATGTGCTGTTTGT 660 consensus_9030#1 CATGCTTCTGCACGCTCCACCTCCAGG---------ACCACCCCTCCGCCGGCTCCCACT 205 ***** **** * * * ** *** ** * *** * *** * consensus_9030#0 TTTGT-CCAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGC 719 consensus_9030#1 CCCGCACCGCGCAGCTGCCGCTCGCGTCATCCGAGTCCCCGGGCCCCGTCGCCGCCGGGG 265 * ** * ** ** * *** *** * * * * ** ** * * consensus_9030#0 GGTCTTGGCTGAGCACGCTGCACGGCGACCGCGACGCGCAGGCGCGGCGCGAGCAGCGCA 779 consensus_9030#1 AGCCCGTGGTGA-TAAGCCTCGACGCCGCCGCGGTGCAGAGGCTCTCGGCGCGCCCCGCC 324 * * * *** * ** * ** ***** ** **** * *** ** *** consensus_9030#0 AGGGGTGGACGGTGACGATCCACGACCTGTCGGGCTCCCCGGTGGCCATGGCGTCCATGG 839 consensus_9030#1 GCCGA--GCTCGTCGTG-TCCGTG-CACGCCGGGCAGAAGGGGAACGCCGGCTGCGGCAT 380 * * ** * *** * * * ***** ** * *** * consensus_9030#0 TGACCCCGTTCGTGCCGTCGCCGGCGGGCTCGGGGCGCGTCTCGCGCGCCAACCCTGGCG 899 consensus_9030#1 GAGCGCCGGCCGCGC-------GCTGGGCAGGGTGCGGGT---GCCCGTCGACG-TGGCG 429 * *** ** ** * **** ** *** ** ** ** * ** ***** consensus_9030#0 CCTGGCTCATCCTGCAGCCCACCGGCGCCGGGC-CGGCGAGCTGGAAGCCGTGGGCGCGG 958 consensus_9030#1 CGCGCCGCGGCCGGGGAG--ACCGTCGTCGCGCGCGACGGGTGGGTGGACGTGGGCAAGC 487 * * * * ** * **** ** ** ** ** ** * ** * ******* * consensus_9030#0 CTGGAGGCGTGGCGGGAGCGCGGCCCCGTCGACGCGCTCGGCTACCGGCTCGAGCTGGTG 1018 consensus_9030#1 C---GGCCGCGGCGGCGGCGT---CCCACGGCCACGCGCGCGCGCAGATCCACATGGTCG 541 * * ** ***** *** *** * * *** ** * * * * * consensus_9030#0 TTCGACTCGGGCCCCACCGAGTGCGCCGTCCCCATCGCCGAGTCGTCCATCAGCACCAAG 1078 consensus_9030#1 TGCGGGCCGAGCCCGACCCACGGTAC-------GTCTTCCAGT------TCGGCGGCGAG 588 * ** ** **** *** * * * ** * *** ** ** * ** consensus_9030#0 CGCGGCGGCCAGTTCGTCATCGACCCGGCCACGTTCCCCGTGGGCGCCGCCGGCGCCGCG 1138 consensus_9030#1 CCGGAGTGCGGGCCGGTCGTCTACCAGG------TGCCCGGGGGCGCCGCCGGCGGTG-G 641 * * ** * *** ** *** ** * **** ************** * * consensus_9030#0 TGGCCGTTCGCCGGCGGCTTCGTGATGGGCTCCACGGCGGAGGGCGAGGGGAGGGCCAGC 1198 consensus_9030#1 CCAGCGGCAGCCGGTGTTCACCTGCCGGTT----CAGCGCTGGGCGGAGGGCAACCAGGA 697 ** ***** * * ** ** * *** ***** *** * * consensus_9030#0 CGGCCCACCGTGCAGGTCGG---CGTGCAGCACGCCACGTGCATGGGCGACGTGGCGCTG 1255 consensus_9030#1 C--CAGATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCGGTC 755 * * * *** * ***** *** ** ** * * * * ** * *** * consensus_9030#0 TTCGTCGCGCTCGCCGCCGCCGTCGACCTCTGCATGGACGCCTGCAAGCTCTTCTCGCAG 1315 consensus_9030#1 TTGGCTGAGCACGCTGCA--CGGCGACCGCGACGCGCAGGCGCG-GCGCGAGCAGCGCAA 812 ** * * ** *** ** ** ***** * * * * ** * ** **** consensus_9030#0 AGGCTCAGGAAGGAGCTGTGCCATGATCAAGAGGACTAGCAGGGAGACGAAACGGAATCA 1375 consensus_9030#1 GGGGT--GGACGGTGACGATCCACGACCTG------------------------------ 840 ** * *** ** * * *** ** * consensus_9030#0 AGTGCATGTACTTGGGGGTTTGGCTTGTGAAGTTGTGATGCATGCGATCACTTTCATGAT 1435 consensus_9030#1 ------------------------------------------------------------ consensus_9030#0 TGTGATTAAATTAGTTAACTATAGATATTCAATTGTTTCTTGTGAAAGTGATGGCCTGTG 1495 consensus_9030#1 ------------------------------------------------------------ consensus_9030#0 GCTGTTTTTAGTTTAGGCTGGGTCGGATCACAAGAAGAGAAACGTATGCTCTATATTCTT 1555 consensus_9030#1 ------------------------------------------------------------ consensus_9030#0 TCCTCGCGATATTCTTTTGATTGGTTTTAATTTATATACGTTTCTGTTAAAAAAACCTAA 1615 consensus_9030#1 ------------------------------------------------------------ consensus_9030#0 AAG 1618 consensus_9030#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||