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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 889 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTCCAACAAACTTATTAGTTGTTGGGTCATTTCCATGATCTAAAAATACAAATGTTTTTGCAAAACCAGGATTCTAAGTATGCATATTTTTTTCTATACATAATGTCAGGTATGTATTCAATTTCTGGTTGGAAAAAAAGTTGCACATCTGAAGTTTATTTATCATCACCCTTGAAATATGAAATATGGAACAGTAAAGCCAGGCTAGCATTTCATATGTGTCACAATACCACTATACAGTTTGTGAAATCATGTACCAAAGGATCTTGATACTGTCCTTGAAAACAATCTTAGGTAGCGTAATCTTCGGTTATCTGTATTCCTCTCAAGAGATGGCTGCAGCGCATCGTAGTGTCCGTAACCATCGTAGAGCACGCAGATTGGATTGTCCTTGCCATACTCCTGACCGTATTCGGCGATGATCCTGGGGCTATCAGAGCCCTTGGTATACATGTAAACAGTGATAGGCATCCTAAGAACATGGGAGCACATGAGCAGTTCAGGTTCTCCT-CCCCAAACATGAGGCTTTCTTATCTGTCTCACATAGCTCTCGAAATCTCCTTCAAGAAACCATTCAGTGTCCCCTTGTCTCGTCCTCTACTCATCTGCTACTTTCGATCGAAGCTCATCGGCAAGCTCCTTCTGGATGCTATCGCTTGGCGACTGCTTTCCTCTCCTTAAGCAGGCACCGTACGCAACAGACCTAAAGAGGCATCTCCCATCGCCTGTAATTCGGATCGATCGCAGCGGGCGGAGCTCCCGATCCGACATCCGCCGCGCCGCGATCCTCCTCTTTCCTCCTCCTCCTCCTGTCGTCGCCGGAGACGAAGGGGGATTGGAATGAGGCAGAGAGGGGACCAGGCTCGT]
[+] EMBL CF336325 [TTTTTTTTTTTTTTTTTTTTTTTTCCAACAAACTTATTAGTTGTTGGGTCATTTCCATGATCTAAAAATACAAATGTTTTTGCAAAACCAGGATTCTAAGTATGCATATTTTTTTCTATACATAATGTCAGGTATGTATTCAATTTCTGGTTGGAAAAAAAGTTGCACATCTGAAGTTTATTTATCATCACCCTTGAAATATGAAATATGGAACAGTAAAGCCAGGCTAGCATTTCATATGTGTCACAATACCACTATACAGTTTGTGAAATCATGTACCAAAGGATCTTGATACTGTCCTTGAAAACAATCTTAGGTAGCGTAATCTTCGGTTATCTGTATTCCTCTCAAAAAATGGCTGCAGCGCATCGTAGTGTCCGTAACCATCGTAAAGCACGCAAATTGGATTGTCCTTGCCATACTCCTGACCGTATTCGGCGATGATCCTGGGGCTATCAAAGCCCTTGGTATACATGTAAACAGTGATAGGCATCCTAAAAACATGGGAGCACATGACCAGTTCAGGTTC ]
[+] EMBL CA760207 [ ttttttTTGCACATCTGAAGTTTATTTATCATCAGCCTTGAAATATGAAATATGGAACAGTAAAGCCAGGCTAGCATTTCATATGTGTCACAATACCACTATACAGTTTGTGAAATCATGTAGCAAAGGATCTTGATACTGTCCTTGAGAACAATCTTAGGTAGCGTAATCTTCGGTTATCTGTATTCCTCTCAAGAGATGGCTGCAGCGCATCGTAGTGTCCGTAACCATCGTAGAGCACGCAGATTGGATTGTCCTTGCCATACTCCTGACCGTATTCGGCGATGATCCTGGGGCTATCAGAGCCCTTGGTATACATGTAAACAGTGATAGGCATCCTAAGAACATGGGAGCACATGAGCAGTTCAGGTTCTCCT CCCCAAACATGAGGCTTTCTTATCTGTCTCACATAGCTCTCGAAATCTCCTTCAAGAAACCATTCAGTGTCCCCTTGTCTCGTCCTCT ]
[-] EMBL CF336324 [ TTCGGTTATCTGTATCCCTCTCAAGAGATGGCTGCAGCGCATCGTAGTGTCCGTAACCATCGTAGAGCACGCAGATTGGATTGTCCTTGCCATACTCCTGACCGTATTCGGCGATGATCCTGGGGCTATCAGAGCCCTTGGTATACATGTAAACAGTGATAGGCATCCTAAGAACATGGGAGCACATGAGCAGTTCAGGTTCTCCTCCCCCAAACATGAGGCTTTCTTATCTGTCTCACATAGCTCTCGAAATCTCCTTCAAGAAACCATTCAGTGTCCCCTCTTCTCCTGACAAACTCATCTGCTACTTTCGATCGAAGCTCATCGGCAAGCTCCTTCTGGATGCTATCGCTTGGCGACTGCTTTCCTCTCCTTAAGCAGGCACCGTACGCAACAGACCTAAAGAGGCATCTCCCATCGCCTGTAATTCGGATCGATCGCAGCGGGCGGAGCTCCCGATCCGACATCCGCCGCGCCGCGATCCTCCTCTTTCCTCCTCCTCCTCCTGTCGTCGCCGGAGACGAAGGGGGATTGGAATGAGGCAGAGAGGGGACCAGGCTCGT]
consensusID : consensus_9033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 850 fasta sequence
[CCCAAACCTGAGGCTTTCTTATCTGTCTCACATAGCTCTCGAAATCTCCTTCAAGAAACCTATCCATCATAATGAAGATTCACCAAAAAAAAAAATACATTATCTGACTGAGGCTTTTTTAAAATTTATGGTTGAAACATCATTAGACTATGAGTTAACAATGAAATCCAGAAGGCAAACATGTAGGAGTAATAGCTAAAGCCAGTCGTTGCATGAGAATTTCACATATGGATAAACCAGCAAAAGTGATTAGTTTGTCATTTTAAGCATATTTTTAGTTATACTCCTTCTGCTTCTGCAAAAGTATCATCAAAGGTAAAAGATGTATCAAATAGACAACAGGAAGGAAAAGAAACCATTCAGTGTCCCCTCTTCTCCTGACAAACTCATCTGCTACCTGGAACAGACAAAAAAAAAGTTCTTCAGTGGATCACACAAGTTCACTGAATTGCATAGCCATCAAGTGATGAACATTGAACAATCACTTTCGATCGAAGCTCATCGGCAAGCTCCTTCTGGATGCTATCGCTTGGCGACTGCTTTCCTCTCCTTAAGCAGGCACCGTACGCAACAGACCTAAAGAGGCATCTCCCATCGCCTGTAATTCCTGAAATGTGAAGACGACATCATTCTAGCTACATCCTATGTTCAGCAATCTAGAGCATCAACTGAAGCAAAAATAAGAACACAATCAGAACTGATAAGTTAGACTGATAGAGAGTGCAGTGAAAAAATTATTCCGATGCACAACAGGACATATGTAAAGAAGAAAGTCACTATTTTCTTTTCTTCTTTCAAAAGGGGAAGAGACTGATCTCTCATCTAATTTTGTCAAAGCGGACACCAAATT]
[+] EMBL CB635104 [CCCAAACCTGAGGCTTTCTTATCTGTCTCACATAGCTCTCGAAATCTCCTTCAAGAAACCTATCCATCATAATGAAGATTCACCAAAAAAAAAAATACATTATCTGACTGAGGCTTTTTTAAAATTTATGGTTGAAACATCATTAGACTATGAGTTAACAATGAAATCCAGAAGGCAAACATGTAGGAGTAATAGCTAAAGCCAGTCGTTGCATGAGAATTTCACATATGGATAAACCAGCAAAAGTGATTAGTTTGTCATTTTAAGCATATTTTTAGTTATACTCCTTCTGCTTCTGCAAAAGTATCATCAAAGGTAAAAGATGTATCAAATAGACAACAGGAAGGAAAAGAAACCATTCAGTGTCCCCTCTTCTCCTGACAAACTCATCTGCTACCTGGAACAGACAAAAAAAAAGTTCTTCAGTGGATCACACAAGTTCACTGAATTGCATAGCCATCAAGTGATGAACATTGAACAATCACTTTCGATCGAAGCTCATCGGCAAGCTCCTTCTGGATGCTATCGCTTGGCGACTGCTTTCCTCTCCTTAAGCAGGCACCGTACGCAACAGACCTAAAGAGGCATCTCCCATCGCCTGTAATTCCTGAAATGTGAAGACGACATCATTCTAGCTACATCCTATGTTCAGCAATCTAGAGCATCAACTGAAGCAAAAATAAGAACACAATCAGAACTGATAAGTTAGACTGATAGAGAGTGCAGTGAAAAAATTATTCCGATGCACAACAGGACATATGTAAAGAAGAAAGTCACTATTTTCTTTTCTTCTTTCAAAAGGGGAAGAGACTGATCTCTCATCTAATTTTGTCAAAGCGGACACCAAATT]
consensusID : consensus_9033#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence
[AGTTTATTTATCATCAGCCTTGAAATATGAAATATGGAACAGTAAAGCCAGGCTAGCATTTCATATGTGTCACAATACCACTATACAGTTTGTGAAATCATGTAGCAGAGGATCTTGATACTGTCCTTGAGAACAATCTTAGGTAGCGTAATCTTCGGTTATCTGTATTCCTCTCAGCCTTGATTGTGTTCTTACAAGAGATGGCTGCAGCGCATCGTAGTGTCCGTAACCATCGTAGAGCACGCAGATTGGATTGTCCTTGCCATACTCCTGACCGTATTCGGCGATGATCCTGGGGCTATCAGAGCCCTTGGTATACATGTAAACAGTGATAGGCATCCTAAGAACATGGGAGCACATGAGCAGTTCAGGTTCTCCTCCCCAAACATGAGGCTTTCTTATCTGTCTCACATAGCTCTCGAAATCTCCTTCAAGAAACCATTCAGTGTCCCCTCTTCTCCTGACAAACTCATCTGCTACTTTCGATCGAAGCTCATCGGCAAGCTCCTTCTGGATGCTATCGCTTGGCGACTGCTTTCCTCTCCTTAAGCAGGCACCGTACGCAACAGACCTAAAGAGGCATCTCCCATCGCCTGTAATTCGGATCGATCGCAGCGGGCGGAGCTCCCGATCCGACATCCGCCGCGCCGCGATCCTCCTCTTTCCTCCTCCTCCTCCTGTCGTCGCCGGAGACGAAGGGGGATTGGAATGAGGCAGAGAGGGGACCAGGCTCGT]
[-] EMBL AK120577 [AGTTTATTTATCATCAGCCTTGAAATATGAAATATGGAACAGTAAAGCCAGGCTAGCATTTCATATGTGTCACAATACCACTATACAGTTTGTGAAATCATGTAGCAGAGGATCTTGATACTGTCCTTGAGAACAATCTTAGGTAGCGTAATCTTCGGTTATCTGTATTCCTCTCAGCCTTGATTGTGTTCTTACAAGAGATGGCTGCAGCGCATCGTAGTGTCCGTAACCATCGTAGAGCACGCAGATTGGATTGTCCTTGCCATACTCCTGACCGTATTCGGCGATGATCCTGGGGCTATCAGAGCCCTTGGTATACATGTAAACAGTGATAGGCATCCTAAGAACATGGGAGCACATGAGCAGTTCAGGTTCTCCTCCCCAAACATGAGGCTTTCTTATCTGTCTCACATAGCTCTCGAAATCTCCTTCAAGAAACCATTCAGTGTCCCCTCTTCTCCTGACAAACTCATCTGCTACTTTCGATCGAAGCTCATCGGCAAGCTCCTTCTGGATGCTATCGCTTGGCGACTGCTTTCCTCTCCTTAAGCAGGCACCGTACGCAACAGACCTAAAGAGGCATCTCCCATCGCCTGTAATTCGGATCGATCGCAGCGGGCGGAGCTCCCGATCCGACATCCGCCGCGCCGCGATCCTCCTCTTTCCTCCTCCTCCTCCTGTCGTCGCCGGAGACGAAGGGGGATTGGAATGAGGCAGAGAGGGGACCAGGCTCGT]
consensusID : consensus_9033#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence
[TCTATACCTAATGTCGGTATGTATTCCATTCTGGTTGGAAGAAGANTTGNCCATCTGAAGTTTATTTATCATCAGCTTGGAAATATGAAATATGGAACAGTAAAGCCAGGCTAGCATTTCATATGTGTCACAATACCACTATACAGTGTGAAATCATGTAGCAGAGGATCTTGATACTGTCCTTGGAGAACAATCTTAGGTAGCGTAATCTTCGGTATCTGTATTCCTCTCCTGCAAATTTTACAGGGGGATGGTTCCTCAAAAAGAAGACTGAAGCAAAAGAACTTAATAGCATGAGTAGGCCATTGTCAGATTTTGTACAGTGCTATACTCACAGCCTTGATTGTGTTCTTACAAGAGATGGCTGCAGCGCAT]
[-] EMBL BQ908727 [TCTATACCTAATGTCGGTATGTATTCCATTCTGGTTGGAAGAAGANTTGNCCATCTGAAGTTTATTTATCATCAGCTTGGAAATATGAAATATGGAACAGTAAAGCCAGGCTAGCATTTCATATGTGTCACAATACCACTATACAGTGTGAAATCATGTAGCAGAGGATCTTGATACTGTCCTTGGAGAACAATCTTAGGTAGCGTAATCTTCGGTATCTGTATTCCTCTCCTGCAAATTTTACAGGGGGATGGTTCCTCAAAAAGAAGACTGAAGCAAAAGAACTTAATAGCATGAGTAGGCCATTGTCAGATTTTGTACAGTGCTATACTCACAGCCTTGATTGTGTTCTTACAAGAGATGGCTGCAGCGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9033#0 TTTTTTTTTTTTTTTTTTTTTTTTCCAACAAACTTATTAGTTGTTGGGTCATTTCCATGA 60
consensus_9033#2 ------------------------------------------------------------
consensus_9033#3 ------------------------------------------------------------
consensus_9033#1 ------------------------------------------------------------
consensus_9033#0 TCTAAAAATACAAATGTTTTTGCAAAACCAGGATTCTAAGTATGCATATTTTTTTCTATA 120
consensus_9033#2 ------------------------------------------------------------
consensus_9033#3 ------------------------------------------------------TCTATA 6
consensus_9033#1 ------------------------------------------------------------
consensus_9033#0 CATAATGTCAGGTATGTATTCAATTTCTGGTTGGAAAAAAAGTTGCACATCTGAAGTTTA 180
consensus_9033#2 ------------------------------------------------------AGTTTA 6
consensus_9033#3 CCTAATGTC-GGTATGTATTCCATT-CTGGTTGGAAGAAGANTTGNCCATCTGAAGTTTA 64
consensus_9033#1 ------------------------CCCAAACCTGAGGCTTTCTTATCTGTCTCACATAGC 36
*
consensus_9033#0 TTTATCATCACCCTTGAAATATGAAATATGGAACAGTAAAGCCAGGCTAGCATTTCATAT 240
consensus_9033#2 TTTATCATCAGCCTTGAAATATGAAATATGGAACAGTAAAGCCAGGCTAGCATTTCATAT 66
consensus_9033#3 TTTATCATCAGCTTGGAAATATGAAATATGGAACAGTAAAGCCAGGCTAGCATTTCATAT 124
consensus_9033#1 TCTCGAAATCTCCTTCAAGAAACCTATCCATCATAATGAAGATTCACCAAAAAAAAAAAT 96
* * * * * ** * ** * * * *** * * * * **
consensus_9033#0 GTGTCACAATACCACTATACAGTTTGTGAAATCATGTACCAAAGGATCTTGATACTGTCC 300
consensus_9033#2 GTGTCACAATACCACTATACAGTTTGTGAAATCATGTAGCAGAGGATCTTGATACTGTCC 126
consensus_9033#3 GTGTCACAATACCACTATACAGT--GTGAAATCATGTAGCAGAGGATCTTGATACTGTCC 182
consensus_9033#1 A---CATTATCTGACTGAGGCTTTTTTAAAATTTATGGTTGAAACATCATTAGACTATGA 153
** ** *** * * **** * *** * * *** *
consensus_9033#0 TTG-AAAACAATCTTAGGTAGCGTAATCTTCGGTTATCTGTATTCCTCTCA--------- 350
consensus_9033#2 TTG-AGAACAATCTTAGGTAGCGTAATCTTCGGTTATCTGTATTCCTCTCAGCCTTGATT 185
consensus_9033#3 TTGGAGAACAATCTTAGGTAGCGTAATCTTCGGT-ATCTGTATTCCTCTCC--------- 232
consensus_9033#1 GTTAACAATGAAATCCAGAAG-GCAAACATGTAGGAGTAATAGCTAAAGCC--------- 203
* * ** * * * ** * ** * * * ** *
consensus_9033#0 -----------AGAGATGGCTGCAGCGCATCGTAGTGTCCGTAACCATCGTAGAGCACGC 399
consensus_9033#2 GTGTTCTTACAAGAGATGGCTGCAGCGCATCGTAGTGTCCGTAACCATCGTAGAGCACGC 245
consensus_9033#3 -----------TGCAAATTTTACAGGGGGATGGTTCCTCAAAAAGAAGACTGAAGCAAAA 281
consensus_9033#1 --------------AGTCGTTGCATGAGAATTTCACATATGGATAAACCAGCAAAAGTGA 249
* ** * * * *
consensus_9033#0 AGATTGGATTGTCCTTGCCATACTCCTGACCGTATTCGGCGATGATCCTGGGGCTATCAG 459
consensus_9033#2 AGATTGGATTGTCCTTGCCATACTCCTGACCGTATTCGGCGATGATCCTGGGGCTATCAG 305
consensus_9033#3 GAACTTAATAG-CATGAGTAGGCCATTGTCAGATTTTG--TACAGTGCTATAC---TCAC 335
consensus_9033#1 TTAGTTTGTCATTTTAAGCATATTTTTAGTTATACTCC-TTCTGCTTCTGCAAAAGTATC 308
* * * * * * * * ** *
consensus_9033#0 AGCCCTTGGTATACATGTAAACAGTGATAGGCATCCTAAGAACATGGGAGCACATGAGCA 519
consensus_9033#2 AGCCCTTGGTATACATGTAAACAGTGATAGGCATCCTAAGAACATGGGAGCACATGAGCA 365
consensus_9033#3 AGCCTTGATTGTGTTCTTACA-AGAGATGGCTGC----AGCGCAT--------------- 375
consensus_9033#1 ATCAAAGGTAAAAGATGTATC---AAATAGACAACAGGAAGGAAAAGAAACCATTCAGTG 365
* * ** ** * * *
consensus_9033#0 GTTCAGGTTCTCCTCCCCAAACATGAGGCTTTCTT--ATCTGTCTCACATAGCTCTCGAA 577
consensus_9033#2 GTTCAGGTTCTCCTCCCCAAACATGAGGCTTTCTT--ATCTGTCTCACATAGCTCTCGAA 423
consensus_9033#3 ------------------------------------------------------------
consensus_9033#1 TCCCCTCTTCTCCTGACAAACTCATCTGCTACCTGGAACAGACAAAAAAAAAGTTCTTCA 425
consensus_9033#0 ATCTCCTTCAAGAAACCATTCAGT-GTCCCCTTGTCTCGTCCTCTAC--TCATCTGCTAC 634
consensus_9033#2 ATCTCCTTCAAGAAACCATTCAGT-GTCCCCTCTTCTCCTGACAAAC--TCATCTGCTAC 480
consensus_9033#3 ------------------------------------------------------------
consensus_9033#1 GTGGATCACACAAGTTCACTGAATTGCATAGCCATCAAGTGATGAACATTGAACAATCAC 485
consensus_9033#0 TTTCGATCGAAGCTCATCGGCAAGCTCCTTCTGGATGCTATCGCTTGGCGACTGCTTTCC 694
consensus_9033#2 TTTCGATCGAAGCTCATCGGCAAGCTCCTTCTGGATGCTATCGCTTGGCGACTGCTTTCC 540
consensus_9033#3 ------------------------------------------------------------
consensus_9033#1 TTTCGATCGAAGCTCATCGGCAAGCTCCTTCTGGATGCTATCGCTTGGCGACTGCTTTCC 545
consensus_9033#0 TCTCCTTAAGCAGGCACCGTACGCAACAGACCTAAAGAGGCATCTCCCATCGCCTGTAAT 754
consensus_9033#2 TCTCCTTAAGCAGGCACCGTACGCAACAGACCTAAAGAGGCATCTCCCATCGCCTGTAAT 600
consensus_9033#3 ------------------------------------------------------------
consensus_9033#1 TCTCCTTAAGCAGGCACCGTACGCAACAGACCTAAAGAGGCATCTCCCATCGCCTGTAAT 605
consensus_9033#0 TCGGATCGATCGCAGCGGGCGGAGCTCCCGATCCGACATCCGCCGCGCCGCGATCCTCCT 814
consensus_9033#2 TCGGATCGATCGCAGCGGGCGGAGCTCCCGATCCGACATCCGCCGCGCCGCGATCCTCCT 660
consensus_9033#3 ------------------------------------------------------------
consensus_9033#1 TCCTGAAATGTGAAGACGACATCATTCTAGCTACATCCTATGTTCAGCAATCTAGAGCAT 665
consensus_9033#0 CTTTCCTCCTCCTCCTCCTGTCGTCGCCGGAGACGAAGGGGGATTGGAATGAGGCAGAGA 874
consensus_9033#2 CTTTCCTCCTCCTCCTCCTGTCGTCGCCGGAGACGAAGGGGGATTGGAATGAGGCAGAGA 720
consensus_9033#3 ------------------------------------------------------------
consensus_9033#1 CAACTGAAGCAAAAATAAGAACACAATCAGAACTGATAAGTTAGACTGATAGAGAGTGCA 725
consensus_9033#0 GGGGACCAGGCTCGT--------------------------------------------- 889
consensus_9033#2 GGGGACCAGGCTCGT--------------------------------------------- 735
consensus_9033#3 ------------------------------------------------------------
consensus_9033#1 GTGAAAAAATTATTCCGATGCACAACAGGACATATGTAAAGAAGAAAGTCACTATTTTCT 785
consensus_9033#0 ------------------------------------------------------------
consensus_9033#2 ------------------------------------------------------------
consensus_9033#3 ------------------------------------------------------------
consensus_9033#1 TTTCTTCTTTCAAAAGGGGAAGAGACTGATCTCTCATCTAATTTTGTCAAAGCGGACACC 845
consensus_9033#0 -----
consensus_9033#2 -----
consensus_9033#3 -----
consensus_9033#1 AAATT 850
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||