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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1839 fasta sequence
[AGTTTTGCACCGGAGAAAAATTCATTGCCTTCTTCTGAATCTCTTCTTCCTCCGAGGAGAGCATTTCTTGCTTTGGTTTGTGTTTTCTTGGGTGTGTCAGGCACAAGTCCGACCTTCCATGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCCGCCGCAGCCAAGCTCCCGGAGGCGGCCGTCGCGGCCGCCGGAGGCGCCGCAGAGGCGGTGGAGGAGGTCGCGTCTTCCGTGCAGGAGCAGGTGCAGGCGCAGGGAGCGCAGGTGTTGGAGTTTGGGGATACCGAGAGGCTGTTCGCCGGGGAGAGGTCGACGTCGCTGGTGCGCACGCTCGCCGTGCTGCAGGCGCTGTCGGTGGGCCCGCTCGTGGACGTGGCGACGGCGGCGCTGAGGTCGCCGGCGGTGGCCGGGAGCGCGGCGGGGCGCGCCGCGGCGAGGGCCACCGCGTACCAGCACTTCTGCGCCGGGGAGACCGCCGAGGAGGCCGCCGCGGCGGTGCGCCGCCTCTGGCGCGGCGGCATGGGCGGGATCCTCGACTACGGCATCGAGGACGCCGAGGACGGCCCCGCCTGCGACCGCAACGCCGCCGGATTCCTCGCCGCCATCGACGTCGCCGCCGCGCTGCCTCCTGGCTCGGCGAGCGTGTGCATCAAGATCACGGCGCTGTGCCCGGTCGCGTTGCTGGAGAAGGCGAGTGATCTGCTGCGGTGGCAGCAG-AAGCACCCGGCGACGAAGCTGCCATGGAAAGTGCACGGGTTCCCGGTGCTGTGCGTCTCCAGCCCGCTGTACCTGACGGCGGCGGAGCCGCCGGCGCTGGAGGCGGAGGAGGAGAGGGAGCTCGAGATGGCGCACGGGCGGCTGCTGGCGATCGGCGAGCGGTGCGCGGAGTACGACATCCCGCTGCTGGTGGACGCCGAGTACGCCACCGTGCAGCCGGCGATCGACTACTTCACGTTCGCCGGCGCGCTGGCGTTCAACGGCGGCGGGAGGCCCATCGTGCACGGCACCGTCCAGGCCTACCTCCGCGACGCGCGCGACCGGCTGGAGGCCATGGCGCGAGCGGCGCAGGGCGAGCGCGTGTGCCTCGCGCTCAAGCTGGTCCGCGGCGCGTACCTGGCGCGCGAGGCCCGCCTCGCGGCCTCCCTCGGCGTGCCGTCGCCGGTCCACCGCAGCATCCAGGACACCCACGACTGCTACAACGGCTGCGCCGCGTTCCTCCTCGACCGCGTCCGCCGCGGCGCCGCCGCCGTGACGCTCGCCACGCACAACGTCGAGTCCGGGCAGCTCGCCGCGGCGAGGGCGCTGGAGCTCGGCATCGGCGGCGGCGGCGACCGCGGCCTGCAGTTCGCGCAGCTGATGGGCATGGCGGATGGCCTCTCGCTCGGCCTCCGCAACGCCGGGTTCCAGGTGAGCAAGTACCTGCCGTACGGTCCAGTGGAGCAGATCATCCCGTACCTCATCAGACGAGCAGAGGAGAACAGGGGATTGCTCTCGTCTTCCTCCTTCGACAGACAGCTGCTCCGGAAGGAGCTTGTGAGGAGGTTCAAGGCTGCAATGCTGGGACGTGAGTGAAAGTGAGGTGGCAGAAGACTGAGGCTGCCTTATCTGTTTGTGTTGCTACTGGGACTTGGGAGTGAAGCGATCGAGTCATGAGTAGAAGTCGTAAACTTGTAAATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGTATCAATCGATAGTGATCTCTGAATAAACTGAATCATCAACGAAATGATGTGCTCGTGCTGCACTGATCTTATCTTGAATCGAGAGGCTTCCATTCCGTAAAAAAAAA]
[+] EMBL AK121010 [AGTTTTGCACCGGAGAAAAATTCATTGCCTTCTTCTGAATCTCTTCTTCCTCCGAGGAGAGCATTTCTTGCTTTGGTTTGTGTTTTCTTGGGTGTGTCAGGCACAAGTCCGACCTTCCATGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCCGCCGCAGCCAAGCTCCCGGAGGCGGCCGTCGCGGCCGCCGGAGGCGCCGCAGAGGCGGTGGAGGAGGTCGCGTCTTCCGTGCAGGAGCAGGTGCAGGCGCAGGGAGCGCAGGTGTTGGAGTTTGGGGATACCGAGAGGCTGTTCGCCGGGGAGAGGTCGACGTCGCTGGTGCGCACGCTCGCCGTGCTGCAGGCGCTGTCGGTGGGCCCGCTCGTGGACGTGGCGACGGCGGCGCTGAGGTCGCCGGCGGTGGCCGGGAGCGCGGCGGGGCGCGCCGCGGCGAGGGCCACCGCGTACCAGCACTTCTGCGCCGGGGAGACCGCCGAGGAGGCCGCCGCGGCGGTGCGCCGCCTCTGGCGCGGCGGCATGGGCGGGATCCTCGACTACGGCATCGAGGACGCCGAGGACGGCCCCGCCTGCGACCGCAACGCCGCCGGATTCCTCGCCGCCATCGACGTCGCCGCCGCGCTGCCTCCTGGCTCGGCGAGCGTGTGCATCAAGATCACGGCGCTGTGCCCGGTCGCGTTGCTGGAGAAGGCGAGTGATCTGCTGCGGTGGCAGCAG AAGCACCCGGCGACGAAGCTGCCATGGAAAGTGCACGGGTTCCCGGTGCTGTGCGTCTCCAGCCCGCTGTACCTGACGGCGGCGGAGCCGCCGGCGCTGGAGGCGGAGGAGGAGAGGGAGCTCGAGATGGCGCACGGGCGGCTGCTGGCGATCGGCGAGCGGTGCGCGGAGTACGACATCCCGCTGCTGGTGGACGCCGAGTACGCCACCGTGCAGCCGGCGATCGACTACTTCACGTTCGCCGGCGCGCTGGCGTTCAACGGCGGCGGGAGGCCCATCGTGCACGGCACCGTCCAGGCCTACCTCCGCGACGCGCGCGACCGGCTGGAGGCCATGGCGCGAGCGGCGCAGGGCGAGCGCGTGTGCCTCGCGCTCAAGCTGGTCCGCGGCGCGTACCTGGCGCGCGAGGCCCGCCTCGCGGCCTCCCTCGGCGTGCCGTCGCCGGTCCACCGCAGCATCCAGGACACCCACGACTGCTACAACGGCTGCGCCGCGTTCCTCCTCGACCGCGTCCGCCGCGGCGCCGCCGCCGTGACGCTCGCCACGCACAACGTCGAGTCCGGGCAGCTCGCCGCGGCGAGGGCGCTGGAGCTCGGCATCGGCGGCGGCGGCGACCGCGGCCTGCAGTTCGCGCAGCTGATGGGCATGGCGGATGGCCTCTCGCTCGGCCTCCGCAACGCCGGGTTCCAGGTGAGCAAGTACCTGCCGTACGGTCCAGTGGAGCAGATCATCCCGTACCTCATCAGACGAGCAGAGGAGAACAGGGGATTGCTCTCGTCTTCCTCCTTCGACAGACAGCTGCTCCGGAAGGAGCTTGTGAGGAGGTTCAAGGCTGCAATGCTGGGACGTGAGTGAAAGTGAGGTGGCAGAAGACTGAGGCTGCCTTATCTGTTTGTGTTGCTACTGGGACTTGGGAGTGAAGCGATCGAGTCATGAGTAGAAGTCGTAAACTTGTAAATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGTATCAATCGATAGTGATCTCTGAATAAACTGA ]
[+] EMBL C91795 [ GCATNAAGATCACGGCGCTGTGCCCGGTCGCGTTGCTGGAGAAGGCGAGTTANCTGCTGCGGTGGCAGCNGAAAGCACCCGGCGACGAAGCTGCCATGGAAAGTGCACGGGTNCCCGGTGCTGTNCGTGTCCAGCCCGCTGTACCTGACGGCGGCGGA CCGCNGAC TTGGAGGCGGAGGAGGAGAGGGAGCTCGAGATGGCGCACGGGCGGCTGCTGGNGATCGGCGANCNGTGCGC ]
[+] EMBL AU172854 [ CTGCAGTTCGCGCAGCTGATGGGCATGGCGGATGGCCTCTCGCTCGGCCTCCGCAACGCCGGGTTCCAGGTGAGCAAGTACCTGCCGTACGGTCCAGTGGAGCAGATCATCCCGTACCTCATCAGACGAGCAGAGGAGAACAGGGGATTGCTCTCGTCTTCCTCCTTCGACAGACAGCTGCTCCGGAAGGAGCTTGTGAGGAGGTTCAAGGCTGCAATGCTGGGACGTGAGTGAAAGTGAGGTGGCAGAAGACTGAGGCTGCCTTATCTGTTTGTGTTGCTACTGGGACTTGGGAGTGAAGCGATCGAGTCATGAGTAGAAGTCGTAAACTTGTAAATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGTATCAATCGATAGTGATCTCTGAATAAACTGAATCATCAACGAAAaaaaaa ]
[+] EMBL BI795555 [ ccGGTGGCAGAAGACTGAGGCTGCCTTATCTGCTTGTGTTGCTGCTGGGACTTGGGAGTGAAGCGGTCGAGTCATGAGTAGAAGTCGTAAACTTGTAAATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGTATCAATCGATCGTGATCTCTGAATAAACTGAATCATCAACGAAATGATGTGCTCGTGCTGCACTGATCTTATCTTGAATCGAGAGGCTTCCATTCCGTAAAAAAAAA]
[-] EMBL AA750300 [ TGAGTAGAAGTCGTAAACTTGT AATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGTATCAATCGATCGTGATCTCTGAATAAACTGAATCATCAACGAAATGATGTGCTCGTGCTGCAGTGAT ]
consensusID : consensus_9048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence
[CGAGAAATTCATNVCCTTCTTCTGAATCTCTTCTTCCTCCGAGVGAGAGCATTTCTTGCTTTGGTTTGTGTTTTCTTGGGTGTGTCAGGCACAAGTCCGACCTTCCATGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCCGCCGCAGCCAAGCTCCCGGGGGGCGGSCCGTCGCGGCCCGHAGGGCCCGCAAGAGGGGGTGGGAGGAGGTTCGCGTCTTTCCCTACAGGAGCAGGTTACAGGCGCAAGGRGCCCAGSTTTTTGAGTTTTGGGATACCA]
[+] EMBL BE229562 [CGAGAAATTCATNVCCTTCTTCTGAATCTCTTCTTCCTCCGAGVGAGAGCATTTCTTGCTTTGGTTTGTGTTTTCTTGGGTGTGTCAGGCACAAGTCCGACCTTCCATGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCCGCCGCAGCCAAGCTCCCGGGGGGCGGSCCGTCGCGGCCCGHAGGGCCCGCAAGAGGGGGTGGGAGGAGGTTCGCGTCTTTCCCTACAGGAGCAGGTTACAGGCGCAAGGRGCCCAGSTTTTTGAGTTTTGGGATACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9048#0 AGTTTTGCACCGGAGAAAAATTCATTGCCTTCTTCTGAATCTCTTCTTCCTCCGAGG-AG 59
consensus_9048#1 -------------CGAGAAATTCATNVCCTTCTTCTGAATCTCTTCTTCCTCCGAGVGAG 47
** ******** ***************************** **
consensus_9048#0 AGCATTTCTTGCTTTGGTTTGTGTTTTCTTGGGTGTGTCAGGCACAAGTCCGACCTTCCA 119
consensus_9048#1 AGCATTTCTTGCTTTGGTTTGTGTTTTCTTGGGTGTGTCAGGCACAAGTCCGACCTTCCA 107
************************************************************
consensus_9048#0 TGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCCGCCGCAG 179
consensus_9048#1 TGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCCGCCGCAG 167
************************************************************
consensus_9048#0 CCAAGCTCCCGGAGGC--GGCCGTCGCGGCCGCCGGAGGCGCCGCAGAGGCGGTGGAGGA 237
consensus_9048#1 CCAAGCTCCCGGGGGGCGGSCCGTCGCGGCCCGHAGGGCCCGCAAGAGGGGGTGGGAGGA 227
************ ** * *********** * * * * ** * ******
consensus_9048#0 GGT-CGCGTCTT-CCGTGCAGGAGCAGGT-GCAGGCGCAGGGAGCGCAGGTGTTGGAGTT 294
consensus_9048#1 GGTTCGCGTCTTTCCCTACAGGAGCAGGTTACAGGCGCAAGGRGCCCAGSTTTTTGAGTT 287
*** ******** ** * *********** ******** ** ** *** * ** *****
consensus_9048#0 TGGGGATACCGAGAGGCTGTTCGCCGGGGAGAGGTCGACGTCGCTGGTGCGCACGCTCGC 354
consensus_9048#1 TTGGGATACCA------------------------------------------------- 298
* ********
consensus_9048#0 CGTGCTGCAGGCGCTGTCGGTGGGCCCGCTCGTGGACGTGGCGACGGCGGCGCTGAGGTC 414
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GCCGGCGGTGGCCGGGAGCGCGGCGGGGCGCGCCGCGGCGAGGGCCACCGCGTACCAGCA 474
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 CTTCTGCGCCGGGGAGACCGCCGAGGAGGCCGCCGCGGCGGTGCGCCGCCTCTGGCGCGG 534
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 CGGCATGGGCGGGATCCTCGACTACGGCATCGAGGACGCCGAGGACGGCCCCGCCTGCGA 594
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 CCGCAACGCCGCCGGATTCCTCGCCGCCATCGACGTCGCCGCCGCGCTGCCTCCTGGCTC 654
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GGCGAGCGTGTGCATCAAGATCACGGCGCTGTGCCCGGTCGCGTTGCTGGAGAAGGCGAG 714
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 TGATCTGCTGCGGTGGCAGCAGAAGCACCCGGCGACGAAGCTGCCATGGAAAGTGCACGG 774
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GTTCCCGGTGCTGTGCGTCTCCAGCCCGCTGTACCTGACGGCGGCGGAGCCGCCGGCGCT 834
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GGAGGCGGAGGAGGAGAGGGAGCTCGAGATGGCGCACGGGCGGCTGCTGGCGATCGGCGA 894
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GCGGTGCGCGGAGTACGACATCCCGCTGCTGGTGGACGCCGAGTACGCCACCGTGCAGCC 954
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GGCGATCGACTACTTCACGTTCGCCGGCGCGCTGGCGTTCAACGGCGGCGGGAGGCCCAT 1014
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 CGTGCACGGCACCGTCCAGGCCTACCTCCGCGACGCGCGCGACCGGCTGGAGGCCATGGC 1074
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GCGAGCGGCGCAGGGCGAGCGCGTGTGCCTCGCGCTCAAGCTGGTCCGCGGCGCGTACCT 1134
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GGCGCGCGAGGCCCGCCTCGCGGCCTCCCTCGGCGTGCCGTCGCCGGTCCACCGCAGCAT 1194
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 CCAGGACACCCACGACTGCTACAACGGCTGCGCCGCGTTCCTCCTCGACCGCGTCCGCCG 1254
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 CGGCGCCGCCGCCGTGACGCTCGCCACGCACAACGTCGAGTCCGGGCAGCTCGCCGCGGC 1314
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GAGGGCGCTGGAGCTCGGCATCGGCGGCGGCGGCGACCGCGGCCTGCAGTTCGCGCAGCT 1374
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GATGGGCATGGCGGATGGCCTCTCGCTCGGCCTCCGCAACGCCGGGTTCCAGGTGAGCAA 1434
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GTACCTGCCGTACGGTCCAGTGGAGCAGATCATCCCGTACCTCATCAGACGAGCAGAGGA 1494
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GAACAGGGGATTGCTCTCGTCTTCCTCCTTCGACAGACAGCTGCTCCGGAAGGAGCTTGT 1554
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GAGGAGGTTCAAGGCTGCAATGCTGGGACGTGAGTGAAAGTGAGGTGGCAGAAGACTGAG 1614
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 GCTGCCTTATCTGTTTGTGTTGCTACTGGGACTTGGGAGTGAAGCGATCGAGTCATGAGT 1674
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 AGAAGTCGTAAACTTGTAAATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGTAT 1734
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 CAATCGATAGTGATCTCTGAATAAACTGAATCATCAACGAAATGATGTGCTCGTGCTGCA 1794
consensus_9048#1 ------------------------------------------------------------
consensus_9048#0 CTGATCTTATCTTGAATCGAGAGGCTTCCATTCCGTAAAAAAAAA 1839
consensus_9048#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||