These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_906#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [CTTTCACCATTTTGGAACGTCGGCACTCACAGGCTGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGGCGAGCTTGCGGACAGCTGCTTATTATACCACAACACTATGCAGTTGTAAAGTGGCACAAGAGAGATGTGCTACATGCATCAGAC] [+] EMBL AA752213 [CTTTCACCATTTTGGAACGTCGGCACTCACAGGCTGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGGCGAGCTTGCGGACAGCTGCTTATTATACCACAACACTATGCAGTTGTAAAGTGGCACAAGAGAGATGTGCTACATGCATCAGAC] consensusID : consensus_906#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 172 fasta sequence [TTGGAACATCAACGCTCACAGCCGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGCGAGCTTCGGACAGCTGCTTATTATACCACAACACTATGCAGTTGTAAGAGGCACAAGAGAAGAGTGCTCAATTCGATCAGAC] [+] EMBL AA752208 [TTGGAACATCAACGCTCACAGCCGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGCGAGCTTCGGACAGCTGCTTATTATACCACAACACTATGCAGTTGTAAGAGGCACAAGAGAAGAGTGCTCAATTCGATCAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_906#0 CTTTCACCATTTTGGAACGTCGGCACTCACAGGCTGTGTATATTACTCAAGGCCGTGCCG 60 consensus_906#1 -----------TTGGAACATCAACGCTCACAG-CCGTGTATATTACTCAAGGCCGTGCCG 48 ******* ** * ******* * ************************* consensus_906#0 GGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGGCGAGCTTGCGGACAGCTG 120 consensus_906#1 GGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACG-CGAGCTT-CGGACAGCTG 106 ***************************************** ******* ********** consensus_906#0 CTTATTATACCACAACACTATGCAGTTGTAAAGTGGCACAAGAGAGATGTGCTACATGC- 179 consensus_906#1 CTTATTATACCACAACACTATGCAGTTGTAAGA-GGCACAAGAGAAGAGTGCTCAATTCG 165 ******************************* *********** ***** ** * consensus_906#0 ATCAGAC 186 consensus_906#1 ATCAGAC 172 ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||