Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 906 cluster # 906       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_906#0 length = 186 sequences # 1  
consensus_906#1 length = 172 sequences # 1  

consensusID : consensus_906#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence
                              [CTTTCACCATTTTGGAACGTCGGCACTCACAGGCTGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGGCGAGCTTGCGGACAGCTGCTTATTATACCACAACACTATGCAGTTGTAAAGTGGCACAAGAGAGATGTGCTACATGCATCAGAC]

[+] EMBL AA752213             [CTTTCACCATTTTGGAACGTCGGCACTCACAGGCTGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGGCGAGCTTGCGGACAGCTGCTTATTATACCACAACACTATGCAGTTGTAAAGTGGCACAAGAGAGATGTGCTACATGCATCAGAC]


>consensus_906#0 CTTTCACCATTTTGGAACGTCGGCACTCACAGGCTGTGTATATTACTCAAGGCCGTGCCG GGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGGCGAGCTTGCGGACAGCTG CTTATTATACCACAACACTATGCAGTTGTAAAGTGGCACAAGAGAGATGTGCTACATGCA TCAGAC



consensusID : consensus_906#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 172
fasta sequence
                              [TTGGAACATCAACGCTCACAGCCGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGCGAGCTTCGGACAGCTGCTTATTATACCACAACACTATGCAGTTGTAAGAGGCACAAGAGAAGAGTGCTCAATTCGATCAGAC]

[+] EMBL AA752208             [TTGGAACATCAACGCTCACAGCCGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGCGAGCTTCGGACAGCTGCTTATTATACCACAACACTATGCAGTTGTAAGAGGCACAAGAGAAGAGTGCTCAATTCGATCAGAC]


>consensus_906#1 TTGGAACATCAACGCTCACAGCCGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGT CAACAACAATGGAAAGACAGTGTTCAACGCGAGCTTCGGACAGCTGCTTATTATACCACA ACACTATGCAGTTGTAAGAGGCACAAGAGAAGAGTGCTCAATTCGATCAGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_906#0      CTTTCACCATTTTGGAACGTCGGCACTCACAGGCTGTGTATATTACTCAAGGCCGTGCCG 60
consensus_906#1      -----------TTGGAACATCAACGCTCACAG-CCGTGTATATTACTCAAGGCCGTGCCG 48
                                ******* **  * ******* * *************************

consensus_906#0      GGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGGCGAGCTTGCGGACAGCTG 120
consensus_906#1      GGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACG-CGAGCTT-CGGACAGCTG 106
                     ***************************************** ******* **********

consensus_906#0      CTTATTATACCACAACACTATGCAGTTGTAAAGTGGCACAAGAGAGATGTGCTACATGC- 179
consensus_906#1      CTTATTATACCACAACACTATGCAGTTGTAAGA-GGCACAAGAGAAGAGTGCTCAATTCG 165
                     *******************************   ***********   *****  ** * 

consensus_906#0      ATCAGAC 186
consensus_906#1      ATCAGAC 172
                     *******




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)