cluster # 906

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Oryza sativa
cluster # 906 cluster # 906 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_906#0 length = 186 sequences # 1

consensus_906#1 length = 172 sequences # 1

consensusID : consensus_906#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence

                              [CTTTCACCATTTTGGAACGTCGGCACTCACAGGCTGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGGCGAGCTTGCGGACAGCTGCTTATTATACCACAACACTATGCAGTTGTAAAGTGGCACAAGAGAGATGTGCTACATGCATCAGAC]

[+] EMBL AA752213             [CTTTCACCATTTTGGAACGTCGGCACTCACAGGCTGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGGCGAGCTTGCGGACAGCTGCTTATTATACCACAACACTATGCAGTTGTAAAGTGGCACAAGAGAGATGTGCTACATGCATCAGAC]




>consensus_906#0
CTTTCACCATTTTGGAACGTCGGCACTCACAGGCTGTGTATATTACTCAAGGCCGTGCCG
GGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGGCGAGCTTGCGGACAGCTG
CTTATTATACCACAACACTATGCAGTTGTAAAGTGGCACAAGAGAGATGTGCTACATGCA
TCAGAC

consensusID : consensus_906#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 172
fasta sequence

                              [TTGGAACATCAACGCTCACAGCCGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGCGAGCTTCGGACAGCTGCTTATTATACCACAACACTATGCAGTTGTAAGAGGCACAAGAGAAGAGTGCTCAATTCGATCAGAC]

[+] EMBL AA752208             [TTGGAACATCAACGCTCACAGCCGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGCGAGCTTCGGACAGCTGCTTATTATACCACAACACTATGCAGTTGTAAGAGGCACAAGAGAAGAGTGCTCAATTCGATCAGAC]




>consensus_906#1
TTGGAACATCAACGCTCACAGCCGTGTATATTACTCAAGGCCGTGCCGGGTTCAAGTTGT
CAACAACAATGGAAAGACAGTGTTCAACGCGAGCTTCGGACAGCTGCTTATTATACCACA
ACACTATGCAGTTGTAAGAGGCACAAGAGAAGAGTGCTCAATTCGATCAGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_906#0      CTTTCACCATTTTGGAACGTCGGCACTCACAGGCTGTGTATATTACTCAAGGCCGTGCCG 60
consensus_906#1      -----------TTGGAACATCAACGCTCACAG-CCGTGTATATTACTCAAGGCCGTGCCG 48
                                ******* **  * ******* * *************************

consensus_906#0      GGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACGGCGAGCTTGCGGACAGCTG 120
consensus_906#1      GGTTCAAGTTGTCAACAACAATGGAAAGACAGTGTTCAACG-CGAGCTT-CGGACAGCTG 106
                     ***************************************** ******* **********

consensus_906#0      CTTATTATACCACAACACTATGCAGTTGTAAAGTGGCACAAGAGAGATGTGCTACATGC- 179
consensus_906#1      CTTATTATACCACAACACTATGCAGTTGTAAGA-GGCACAAGAGAAGAGTGCTCAATTCG 165
                     *******************************   ***********   *****  ** * 

consensus_906#0      ATCAGAC 186
consensus_906#1      ATCAGAC 172
                     *******