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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9066#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1951 fasta sequence
[CCCCCACTCCCCCACCTCCTCCCGTCCTCCGGCCGCCGCTCCCCACCCGCCGCCGCCGCCGCCGCCCGCAGAAGCCGCAGATGGCGTCGTCGGCGTCCACCCTCGAGATCGAGGCCCGCGACGTGGTGAAGATAGTGCTGCAGTTCTGCAAGGAGAACTCGCTGCAGCAGACGTTCCAGACGCTGCAGAACGAGTGCCAGGTCTCGCTCAACACCGTCGACAGCATCGACACCTTCATCGCCGACATCAATGCCGGGCGCTGGGACGCTGTGCTGCCCCAGGTTGCGCAGCTCAAGCTGCCGCGCAAGAAGCTCGAGGACCTGTACGAGCAGATTGTGCTCGAGATGGCTGAGCTCCGTGAGCTGGACACGGCGCGCGCCATCCTCCGCCAGACCCAGGTCATGGGCGTCATGAAGCAGGAGCAGCCCGAGCGGTACCTCAGGCTTGAGCATCTCCTTGTCCGGACATACTTTGACCCCAATGAGGCCTACCAAGAATCCACCAAGGAGAAACGACGTGCACAGATTTCCCAAGCTATTGCTTCTGAAGTTTCAGTAGTTCCACCTTCTCGGTTAATGGCACTGATTGGTCAGGCTTTGAAATGGCAACAGCACCAAGGATTGTTACCACCTGGCACACAGTTTGATTTATTTAGAGGAACTGCTGCAATGAAGCAAGATGAAGAGGAAACATATCCTACTACTTTATCACATCAAACAAAGTTCGGGAAGAAAACTCACCCTGAATGTGCTCGATTTTCACCTGATGGCCAGTACCTTGTATCATGCTCAGTGGATGGAATCATTGAGGTTTGGGATTATATCAGCGGGAAGCTTAAAAAGGATCTTCAATATCAAGCTGACGAAAGCTTCATGATGCACGATGATGCGGTGCTTTCTGTTGATTTCAGTAGAGATTCTGAGATGCTGGCATCTGGATCACAGGATGGAAAGATTAAGGTTTGGCGTATACGAACTGGCCAGTGTTTGCGTCGCCTCGAGCGTGCACATGCAAAAGGTGTTACAAGTGTTACATTCTCACGTGATGGAACTCAGATATTGAGTTCATCCTTTGACACTACTGCAAGAGTACATGGCCTCAAGTCCGGAAAGATGCTGAAGGAATTCCGAGGCCATAACTCATATGTGAATTGTGCCATCTTTTCTACAGATGGTAGCCGTGTTATTACAGCTTCCAGTGATTGTACTGTTAAGGTGTGGGATACGAAAACAACAGATTGTTTGCAAACATTCAAGCCACCACCTCCTTTGAGGGGAGGAGATGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATAGTGATCACATTATTGTGTGCAATAAGACATCT-TC-AATA-TACA-TAATGACTCTACAAGGACAGGT-TGTAAAAAGTTTTTCATCTGGT-AAACGGGAAGGGGGAGATTTCCTTGCAGCTTCCGTTTC-ACCA-AAAGGAGAATGGATATATTGTGTTGGTGAAGACATGAACATGTATTGCTTTAGCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCATC-ACTC-ACCACCCTCATAGGAACTT-GATTGCTACTTATGCTGAAGATTGCACGATGAAAACATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCATGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATTTAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCATTGTATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGAGGAAA-CAAAATTAGGTGAGGTGAGCATGATTCCTTTTGTCGCGGACTCTTGCTTTTATTGGAGCGCTGAAAATCTGAAATACTGAATGCAATTAC]
[+] EMBL AK121409 [CCCCCACTCCCCCACCTCCTCCCGTCCTCCGGCCGCCGCTCCCCACCCGCCGCCGCCGCCGCCGCCCGCAGAAGCCGCAGATGGCGTCGTCGGCGTCCACCCTCGAGATCGAGGCCCGCGACGTGGTGAAGATAGTGCTGCAGTTCTGCAAGGAGAACTCGCTGCAGCAGACGTTCCAGACGCTGCAGAACGAGTGCCAGGTCTCGCTCAACACCGTCGACAGCATCGACACCTTCATCGCCGACATCAATGCCGGGCGCTGGGACGCTGTGCTGCCCCAGGTTGCGCAGCTCAAGCTGCCGCGCAAGAAGCTCGAGGACCTGTACGAGCAGATTGTGCTCGAGATGGCTGAGCTCCGTGAGCTGGACACGGCGCGCGCCATCCTCCGCCAGACCCAGGTCATGGGCGTCATGAAGCAGGAGCAGCCCGAGCGGTACCTCAGGCTTGAGCATCTCCTTGTCCGGACATACTTTGACCCCAATGAGGCCTACCAAGAATCCACCAAGGAGAAACGACGTGCACAGATTTCCCAAGCTATTGCTTCTGAAGTTTCAGTAGTTCCACCTTCTCGGTTAATGGCACTGATTGGTCAGGCTTTGAAATGGCAACAGCACCAAGGATTGTTACCACCTGGCACACAGTTTGATTTATTTAGAGGAACTGCTGCAATGAAGCAAGATGAAGAGGAAACATATCCTACTACTTTATCACATCAAACAAAGTTCGGGAAGAAAACTCACCCTGAATGTGCTCGATTTTCACCTGATGGCCAGTACCTTGTATCATGCTCAGTGGATGGAATCATTGAGGTTTGGGATTATATCAGCGGGAAGCTTAAAAAGGATCTTCAATATCAAGCTGACGAAAGCTTCATGATGCACGATGATGCGGTGCTTTCTGTTGATTTCAGTAGAGATTCTGAGATGCTGGCATCTGGATCACAGGATGGAAAGATTAAGGTTTGGCGTATACGAACTGGCCAGTGTTTGCGTCGCCTCGAGCGTGCACATGCAAAAGGTGTTACAAGTGTTACATTCTCACGTGATGGAACTCAGATATTGAGTTCATCCTTTGACACTACTGCAAGAGTACATGGCCTCAAGTCCGGAAAGATGCTGAAGGAATTCCGAGGCCATAACTCATATGTGAATTGTGCCATCTTTTCTACAGATGGTAGCCGTGTTATTACAGCTTCCAGTGATTGTACTGTTAAGGTGTGGGATACGAAAACAACAGATTGTTTGCAAACATTCAAGCCACCACCTCCTTTGAGGGGAGGAGATGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATAGTGATCACATTATTGTGTGCAATAAGACATCT TC AATA TACA TAATGACTCTACAAGGACAGGT TGTAAAAAGTTTTTCATCTGGT AAACGGGAAGGGGGAGATTTCCTTGCAGCTTCCGTTTC ACCA AAAGGAGAATGGATATATTGTGTTGGTGAAGACATGAACATGTATTGCTTTAGCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCATC ACTC ACCACCCTCATAGGAACTT GATTGCTACTTATGCTGAAGATTGCACGATGAAAACATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCATGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATTTAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCATTGTATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGAGGAAA CAAAATTAGGTGAGGTGAGCATGATTCCTTTTGTCGCGGACTCTTGCTTTTATTGGAGCGCTGAAAATCTGAAATACTGAATGCAATTAC]
[+] EMBL AA750070 [ GATATTGAGTTCATCCTTTGACACTACTGTAAGAGTACATGGCCTCAAGTCCGGAAAGATGCTGAAGGAATTCCGAGGCCATAACTCATATGTGAATTGTGCCATCTTTTCTACAGATGGTAGCCGTGTTATTACAGCTTCCAGTGATTGTACTGTT AGGTGTGGGATACGAAAACAACAGATTG TTGC AACA TC AG CA CA CTC TTGA GGA GAGATGC ACTGTa ]
[+] EMBL BQ908874 [ TAAGACATCTGTCAAANAGTACAGTAATGACTCTACAAGGACAGGTGTGTAAAAAGTTTTTCATCTGGTAAAACGGTAAGGGGGAGATTTCCTTGCAGCTTCCGTTTCTACCACAAAGGAGAATGGATATATTGTGTTGGTGAAGACATGAACATGTATTGCTTTAGCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCATCTACTCTACCACCCTCATAGGAACTT GATTGCTACTTATGCTGAAGATTGCACGATGAAAACATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCATGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATTTAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCCTTGTATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGAGGAAACCAAAATTAGGTGAaaaaaaaaa ]
[+] EMBL AU031363 [ AAAGGAGAATGGATATATTGTGTTGGTGAAGACATGAACATGTATTGCTTTAGCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCATC ACTC ACCACCCTCATAGGAACTTGGATTGCTACTTATGCTGAAGATTGCACGATGAAAACATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCATGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATTTAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCATTGTANCTTATATTATATAGCATTAGTAGGTANCA ]
consensusID : consensus_9066#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence
[ACAAGGGGGGTTTAGGCCCTCAATCATGCTTCTTACCTTATGGTGGTGCGCCATTTCCAGGGAGGAGATGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATAGTGATCACATTATTGTGTGCAATAAGACATCTTCAATATACATAATGACTCTACAAGGACAGGTTGTAAAAAGTTTTTCATCTGGTAAACGGGAAGGGGGAGATTTCCTTGCAGCTTCCGTTTCACCAAAAGGAGAATGGATATATTGTGTAGGTGAAGACATGAACATGTATTGCTTTAGCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCATCACTCACCACCCTCATAGGAACCTGATTGCTACTTATGCTGAAGATTGCACGATGAAAACATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCATGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATTTAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCATTGNATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGANGAAACAAAATTAGGTGAGGTGAGCATGATTNCTTTTGTCGCAAAAAA]
[+] EMBL CA766841 [ACAAGGGGGGTTTAGGCCCTCAATCATGCTTCTTACCTTATGGTGGTGCGCCATTTCCAGGGAGGAGATGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATAGTGATCACATTATTGTGTGCAATAAGACATCTTCAATATACATAATGACTCTACAAGGACAGGTTGTAAAAAGTTTTTCATCTGGTAAACGGGAAGGGGGAGATTTCCTTGCAGCTTCCGTTTCACCAAAAGGAGAATGGATATATTGTGTAGGTGAAGACATGAACATGTATTGCTTTAGCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCATCACTCACCACCCTCATAGGAACCTGATTGCTACTTATGCTGAAGATTGCACGATGAAAACATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCATGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATTTAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCATTGNATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGANGAAACAAAATTAGGTGAGGTGAGCATGATTNCTTTTGTCGC ]
[+] EMBL AU095335 [ TAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCATTGTATCTTATATTATATAGCATTAGTAGGTATCATTGTATNNAGGAAACAAAATTAGGTGAGGTGAGNATGATTCCTTTaaaaaaaaaaaa]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9066#0 CCCCCACTCCCCCACCTCCTCCCGTCCTCCGGCCGCCGCTCCCCACCCGCCGCCGCCGCC 60
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 GCCGCCCGCAGAAGCCGCAGATGGCGTCGTCGGCGTCCACCCTCGAGATCGAGGCCCGCG 120
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 ACGTGGTGAAGATAGTGCTGCAGTTCTGCAAGGAGAACTCGCTGCAGCAGACGTTCCAGA 180
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 CGCTGCAGAACGAGTGCCAGGTCTCGCTCAACACCGTCGACAGCATCGACACCTTCATCG 240
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 CCGACATCAATGCCGGGCGCTGGGACGCTGTGCTGCCCCAGGTTGCGCAGCTCAAGCTGC 300
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 CGCGCAAGAAGCTCGAGGACCTGTACGAGCAGATTGTGCTCGAGATGGCTGAGCTCCGTG 360
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 AGCTGGACACGGCGCGCGCCATCCTCCGCCAGACCCAGGTCATGGGCGTCATGAAGCAGG 420
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 AGCAGCCCGAGCGGTACCTCAGGCTTGAGCATCTCCTTGTCCGGACATACTTTGACCCCA 480
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 ATGAGGCCTACCAAGAATCCACCAAGGAGAAACGACGTGCACAGATTTCCCAAGCTATTG 540
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 CTTCTGAAGTTTCAGTAGTTCCACCTTCTCGGTTAATGGCACTGATTGGTCAGGCTTTGA 600
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 AATGGCAACAGCACCAAGGATTGTTACCACCTGGCACACAGTTTGATTTATTTAGAGGAA 660
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 CTGCTGCAATGAAGCAAGATGAAGAGGAAACATATCCTACTACTTTATCACATCAAACAA 720
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 AGTTCGGGAAGAAAACTCACCCTGAATGTGCTCGATTTTCACCTGATGGCCAGTACCTTG 780
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 TATCATGCTCAGTGGATGGAATCATTGAGGTTTGGGATTATATCAGCGGGAAGCTTAAAA 840
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 AGGATCTTCAATATCAAGCTGACGAAAGCTTCATGATGCACGATGATGCGGTGCTTTCTG 900
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 TTGATTTCAGTAGAGATTCTGAGATGCTGGCATCTGGATCACAGGATGGAAAGATTAAGG 960
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 TTTGGCGTATACGAACTGGCCAGTGTTTGCGTCGCCTCGAGCGTGCACATGCAAAAGGTG 1020
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 TTACAAGTGTTACATTCTCACGTGATGGAACTCAGATATTGAGTTCATCCTTTGACACTA 1080
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 CTGCAAGAGTACATGGCCTCAAGTCCGGAAAGATGCTGAAGGAATTCCGAGGCCATAACT 1140
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 CATATGTGAATTGTGCCATCTTTTCTACAGATGGTAGCCGTGTTATTACAGCTTCCAGTG 1200
consensus_9066#1 ------------------------------------------------------------
consensus_9066#0 ATTGTACTGTTAAGGTGTGGGATACGAAAACAACAGATTGTTTGCAAACATTCAAGCCAC 1260
consensus_9066#1 ------------ACAAGGGGGGTTTAGGCCCTCAATCATGCTTCTTACC--TTATGGTGG 46
* * *** * * * ** ** * * * * *
consensus_9066#0 CACCTCCTTTGAGGGGAGGAGATGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATA 1320
consensus_9066#1 TGCGCCATTTCCAGGGAGGAGATGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATA 106
* * *** ***********************************************
consensus_9066#0 GTGATCACATTATTGTGTGCAATAAGACATCTTCAATATACATAATGACTCTACAAGGAC 1380
consensus_9066#1 GTGATCACATTATTGTGTGCAATAAGACATCTTCAATATACATAATGACTCTACAAGGAC 166
************************************************************
consensus_9066#0 AGGTTGTAAAAAGTTTTTCATCTGGTAAACGGGAAGGGGGAGATTTCCTTGCAGCTTCCG 1440
consensus_9066#1 AGGTTGTAAAAAGTTTTTCATCTGGTAAACGGGAAGGGGGAGATTTCCTTGCAGCTTCCG 226
************************************************************
consensus_9066#0 TTTCACCAAAAGGAGAATGGATATATTGTGTTGGTGAAGACATGAACATGTATTGCTTTA 1500
consensus_9066#1 TTTCACCAAAAGGAGAATGGATATATTGTGTAGGTGAAGACATGAACATGTATTGCTTTA 286
******************************* ****************************
consensus_9066#0 GCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCA 1560
consensus_9066#1 GCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCA 346
************************************************************
consensus_9066#0 TCACTCACCACCCTCATAGGAACTTGATTGCTACTTATGCTGAAGATTGCACGATGAAAA 1620
consensus_9066#1 TCACTCACCACCCTCATAGGAACCTGATTGCTACTTATGCTGAAGATTGCACGATGAAAA 406
*********************** ************************************
consensus_9066#0 CATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCA 1680
consensus_9066#1 CATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCA 466
************************************************************
consensus_9066#0 TGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATT 1740
consensus_9066#1 TGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATT 526
************************************************************
consensus_9066#0 TAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCC 1800
consensus_9066#1 TAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCC 586
************************************************************
consensus_9066#0 AGTGTATTCCCATTGTATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGAGGAA 1860
consensus_9066#1 AGTGTATTCCCATTGNATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGANGAA 646
*************** **************************************** ***
consensus_9066#0 ACAAAATTAGGTGAGGTGAGCATGATTCCTTTTGTCGCGGACTCTTGCTTTTATTGGAGC 1920
consensus_9066#1 ACAAAATTAGGTGAGGTGAGCATGATTNCTTTTGTCGCAAAAAA---------------- 690
*************************** ********** *
consensus_9066#0 GCTGAAAATCTGAAATACTGAATGCAATTAC 1951
consensus_9066#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||