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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 753 fasta sequence
[TGACACTGACTGGACTGAAGGAGTAGAAAATCCTAATCCAGCATCAGTCCCAGCTCGATCTCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTCATCTTCAAGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATCTCCGACAGGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACACGCCGATGACAAGACCCAGCCACTTCGTCTTCAGGCTTCCACCGGCTCCGAGGAGGAGGTCACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAGGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTAC-TTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATAAATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAGTGCTATCTCGGTCACTGTGATTGATTTGCCTCTGAAGAAAAAATTCTC]
[+] EMBL CF279679 [TGACACTGACTGGACTGAAGGAGTAGAAAATCCTAATCCAGCATCAGTCCCAGCTCGATCTCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTCATCTTCAAGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATCTCCGACAGGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACACGCCGATGACAAGACCCAGCCACTTCGTCTTCAGGCTTCCACCGGCTCCGAGGAGGAGGCCACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAAGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTAC TTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAAA ]
[+] EMBL AK121513 [ AATCCAGCATCAGTCCCAGCTCGATCTCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTCATCTTCAAGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATCTCCGACAGGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACACGCCGATGACAAGACCCAGCCACTTCGTCTTCAGGCTTCCACCGGCTCCGAGGAGGAGGTCACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAGGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAA ]
[+] EMBL AK063795 [ CATCAGTCCCAGCTCGATCTCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTCATCTTCAAGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATCTCCGACAGGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACACGCCGATGACAAGACCCAGCCACTTCGTCTTCAGGCTTCCACCGGCTCCGAGGAGGAGGTCACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAGGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATAAATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAGTGCTATCTCGGTCACTGTGATTGATTTGCCTCTGAAGAAAAAATTCTC]
[-] EMBL CF279680 [ GCTTAGGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTAC TTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATAAATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAGTGCTATCTCGGTCACTGTGATTGATTTGCCTCTGAAGAAAAAAa ]
consensusID : consensus_9074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence
[CCTAATCAAGCATCAGTCCCAGCTCGATCTCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTCATCTTCAGGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATCTCCGACAAGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACACGCCGATGACAAGACCCAGCCACTTTGTCTTCAGGCTTCCACCGGCCCCGAGGAGGAGGTCACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAGGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGATCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATAAATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAAAAAAAAAAAAA]
[-] EMBL CA760163 [CCTAATCAAGCATCAGTCCCAGCTCGATCTCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTCATCTTCAGGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATCTCCGACAAGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACACGCCGATGACAAGACCCAGCCACTTTGTCTTCAGGCTTCCACCGGCCCCGAGGAGGAGGTCACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAGGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGATCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATAAATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAAAAAAAAAAAAA]
[+] EMBL D42207 [ TCTCCCTACAACTAGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9074#0 TGACACTGACTGGACTGAAGGAGTAGAAAATCCTAATCCAGCATCAGTCCCAGCTCGATC 60
consensus_9074#1 -------------------------------CCTAATCAAGCATCAGTCCCAGCTCGATC 29
******* *********************
consensus_9074#0 TCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTC 120
consensus_9074#1 TCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTC 89
************************************************************
consensus_9074#0 ATCTTCAAGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATC 180
consensus_9074#1 ATCTTCAGGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATC 149
******* ****************************************************
consensus_9074#0 TCCGACAGGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACAC 240
consensus_9074#1 TCCGACAAGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACAC 209
******* ****************************************************
consensus_9074#0 GCCGATGACAAGACCCAGCCACTTCGTCTTCAGGCTTCCACCGGCTCCGAGGAGGAGGTC 300
consensus_9074#1 GCCGATGACAAGACCCAGCCACTTTGTCTTCAGGCTTCCACCGGCCCCGAGGAGGAGGTC 269
************************ ******************** **************
consensus_9074#0 ACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAG 360
consensus_9074#1 ACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAG 329
************************************************************
consensus_9074#0 GATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGG 420
consensus_9074#1 GATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGG 389
************************************************************
consensus_9074#0 TTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTA 480
consensus_9074#1 TTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTA 449
************************************************************
consensus_9074#0 GCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTAGCT 540
consensus_9074#1 GCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTAGCT 509
************************************************************
consensus_9074#0 GTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGA 600
consensus_9074#1 GTTTATGCTCTGTAACGAGGTGCAGATCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGA 569
************************* **********************************
consensus_9074#0 AACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATA 660
consensus_9074#1 AACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATA 629
************************************************************
consensus_9074#0 AATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAGTGCTATCTCGGTCAC 720
consensus_9074#1 AATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAAAAAAAAAAAAA---- 685
******************************************** *
consensus_9074#0 TGTGATTGATTTGCCTCTGAAGAAAAAATTCTC 753
consensus_9074#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||