cluster # 9082

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Oryza sativa
cluster # 9082 cluster # 9082 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9082#0 length = 782 sequences # 2
consensus_9082#1 length = 651 sequences # 1

consensus_9082#2 length = 533 sequences # 2
consensus_9082#3 length = 182 sequences # 1

consensusID : consensus_9082#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 782
fasta sequence

                              [TTTTTGACTAACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACATCATCAGCTTGACAGGGCAAATACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGNCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGCATATGTAAATGACCTAGTTCACCTATATTTCCATGAAAAAACATAAGGATAGCAAACCTGTGTCACAATCCAGATGATGCTGAGGATTGTCAGCAACAGCGCAACAAAATTTGAGCAATGGTTAGGGAACAAAATATGAGCTGCTAGTAGATTTGAAAAGACTAGATAGATTCATAAAGTTTTAAGCAGTTCTGTGTTCAAGACAATCTGCTACCGGTAGCTATATATCTCTGGTTTCACTAAAGCTGGAGCCTGGCCTTCAATAATGCACTACAATTTCACTTGACTTTAGCAATAGAAACATTCCTGCTTGGGGTGTAGTGTAGCACATCGCAGTTGCGCCAATATTTACTCCAACTGCCATGGTCTTTGACTACAGAGAGATCCGGAAAGTGCTTTTTAATATTAAAACCACTTTTTGAAAAAATAATTATTATGTGAGCCCACC]

[-] EMBL AU031490             [TTTTTGACTAACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACATCATCAGCTTGACAGGGCAAATACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGNCCTCTCAACTTGTAACTTGCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB675782             [                                                     GAGACATCATCCCCTTGACAGGGCAAATACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGCCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGCATATGTAAATGACCTAGTTCACCTATATTTCCATGAAAAAACATAAGGATAGCAAACCTGTGTCACAATCCAGATGATGCTGAGGATTGTCAGCAACAGCGCAACAAAATTTGAGCAATGGTTAGGGAACAAAATATGAGCTGCTAGTAGATTTGAAAAGACTAGATAGATTCATAAAGTTTTAAGCAGTTCTGTGTTCAAGACAATCTGCTACCGGTAGCTATATATCTCTGGTTTCACTAAAGCTGGAGCCTGGCCTTCAATAATGCACTACAATTTCACTTGACTTTAGCAATAGAAACATTCCTGCTTGGGGTGTAGTGTAGCACATCGCAGTTGCGCCAATATTTACTCCAACTGCCATGGTCTTTGACTACAGAGAGATCCGGAAAGTGCTTTTTAATATTAAAACCACTTTTTGAAAAAATAATTATTATGTGAGCCCACC]




>consensus_9082#0
TTTTTGACTAACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACAT
CATCAGCTTGACAGGGCAAATACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGT
GCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACA
AACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTA
GCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGNCCTCTC
AACTTGTAACTTGCACTTCAAATGGTACCCCTGCATATGTAAATGACCTAGTTCACCTAT
ATTTCCATGAAAAAACATAAGGATAGCAAACCTGTGTCACAATCCAGATGATGCTGAGGA
TTGTCAGCAACAGCGCAACAAAATTTGAGCAATGGTTAGGGAACAAAATATGAGCTGCTA
GTAGATTTGAAAAGACTAGATAGATTCATAAAGTTTTAAGCAGTTCTGTGTTCAAGACAA
TCTGCTACCGGTAGCTATATATCTCTGGTTTCACTAAAGCTGGAGCCTGGCCTTCAATAA
TGCACTACAATTTCACTTGACTTTAGCAATAGAAACATTCCTGCTTGGGGTGTAGTGTAG
CACATCGCAGTTGCGCCAATATTTACTCCAACTGCCATGGTCTTTGACTACAGAGAGATC
CGGAAAGTGCTTTTTAATATTAAAACCACTTTTTGAAAAAATAATTATTATGTGAGCCCA
CC

consensusID : consensus_9082#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 651
fasta sequence

                              [GACCGGCGGCGAGCTGCCAGCTGGGGATGCGCCCTCTCTGCTGCCGGAGAATCTGGATCCGGCCGGCATCGGCGACGGCGACGGCGAGGGCCGGGCGGCCAGATCGACGGCGCCGTCGACGTGGGGTGGAGAGCAGGTACGCCACGCAGCTCTACTCCTAGCCCTAGGTCGCTCTGCGCGCTGTTCTTTGGCTCCGACTGAATCCATCCGGTAATAAGTTTTGTACCATATCGCCCATTCTGAGACAACACGACCTGTTTATTAGCTCGATTTGATTCTATTCCATCGCCACCCCAGGGACACTCACCCCGACTGCAATGGGCAGCGGTAGGGCGTGTATCCGCCCTACCGTTTCAGCTGCAAAAAAAAAAAGGCAGTGAAAAGATCCCCTACTGGGGCACGGCAGGCGACCCCCTGCCGGCCAGCTGCAAAAAAAAAAAGATCCCCACGGCAGGCGACCCCCTGCCGAAAAGATGCCCTATAGAGGCACACAGTCGGGTCTCTCGGTGGAGGCAGCGCTAGACACTAGCGCTTGGCTTTTTGAAATTTGTAACATTAGATTTTTTTTTCTATGTTGAACTCATTGCTACTCATGGGTTAATCGAACCAATTGCAATTTGACCATTCCATCCTTTGGATGCATAGTTCGAT]

[+] EMBL CB675781             [GACCGGCGGCGAGCTGCCAGCTGGGGATGCGCCCTCTCTGCTGCCGGAGAATCTGGATCCGGCCGGCATCGGCGACGGCGACGGCGAGGGCCGGGCGGCCAGATCGACGGCGCCGTCGACGTGGGGTGGAGAGCAGGTACGCCACGCAGCTCTACTCCTAGCCCTAGGTCGCTCTGCGCGCTGTTCTTTGGCTCCGACTGAATCCATCCGGTAATAAGTTTTGTACCATATCGCCCATTCTGAGACAACACGACCTGTTTATTAGCTCGATTTGATTCTATTCCATCGCCACCCCAGGGACACTCACCCCGACTGCAATGGGCAGCGGTAGGGCGTGTATCCGCCCTACCGTTTCAGCTGCAAAAAAAAAAAGGCAGTGAAAAGATCCCCTACTGGGGCACGGCAGGCGACCCCCTGCCGGCCAGCTGCAAAAAAAAAAAGATCCCCACGGCAGGCGACCCCCTGCCGAAAAGATGCCCTATAGAGGCACACAGTCGGGTCTCTCGGTGGAGGCAGCGCTAGACACTAGCGCTTGGCTTTTTGAAATTTGTAACATTAGATTTTTTTTTCTATGTTGAACTCATTGCTACTCATGGGTTAATCGAACCAATTGCAATTTGACCATTCCATCCTTTGGATGCATAGTTCGAT]




>consensus_9082#1
GACCGGCGGCGAGCTGCCAGCTGGGGATGCGCCCTCTCTGCTGCCGGAGAATCTGGATCC
GGCCGGCATCGGCGACGGCGACGGCGAGGGCCGGGCGGCCAGATCGACGGCGCCGTCGAC
GTGGGGTGGAGAGCAGGTACGCCACGCAGCTCTACTCCTAGCCCTAGGTCGCTCTGCGCG
CTGTTCTTTGGCTCCGACTGAATCCATCCGGTAATAAGTTTTGTACCATATCGCCCATTC
TGAGACAACACGACCTGTTTATTAGCTCGATTTGATTCTATTCCATCGCCACCCCAGGGA
CACTCACCCCGACTGCAATGGGCAGCGGTAGGGCGTGTATCCGCCCTACCGTTTCAGCTG
CAAAAAAAAAAAGGCAGTGAAAAGATCCCCTACTGGGGCACGGCAGGCGACCCCCTGCCG
GCCAGCTGCAAAAAAAAAAAGATCCCCACGGCAGGCGACCCCCTGCCGAAAAGATGCCCT
ATAGAGGCACACAGTCGGGTCTCTCGGTGGAGGCAGCGCTAGACACTAGCGCTTGGCTTT
TTGAAATTTGTAACATTAGATTTTTTTTTCTATGTTGAACTCATTGCTACTCATGGGTTA
ATCGAACCAATTGCAATTTGACCATTCCATCCTTTGGATGCATAGTTCGAT

consensusID : consensus_9082#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 533
fasta sequence

                              [ACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACATCATCAGCTTGACAGGGCAAATACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGCCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGCTCTCCACCCCACGTCGACGGCGCCGTCGATCTGGCCGCCCGGCCCTCGCCGTCGCCGTCGCCGATGCCGGCCGGATCCAGATTCTCCGGCAGCAGAGAGGGCGCATCCCCAGCTGGCAGCTCGCCGCCGGTCTTCGGGAAGCGGCGGCGTCGGGGAGAGTGGAGAGAGTCGGGAAGGAGGAGACATCGAGCCTAGCTCCCATCGATGAC]

[-] EMBL AK121666             [ACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACATCATCAGCTTGACAGGGCAAATACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGCCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGCTCTCCACCCCACGTCGACGGCGCCGTCGATCTGGCCGCCCGGCCCTCGCCGTCGCCGTCGCCGATGCCGGCCGGATCCAGATTCTCCGGCAGCAGAGAGGGCGCATCCCCAGCTGGCAGCTCGCCGCCGGTCTTCGGGAAGCGGCGGCGTCGGGGAGAGTGGAGAGAGTCGGGAAGGAGGAGACATCGAGCCTAGCTCCCATCGATGAC]
[-] EMBL AU162366             [                                                                                                                         GTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGCCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGCTCTCCACCCCACGTCGACGGCGCCGTCGATCTGGCCGCCCGGCCCTCGCCGTCGCCGTCGCCGATGCCGGCCGGATCCAGATTCTCCGGCAGCAGAGAGGGCGCATCCCCAGCTGGCAGCTCGCCGCCGGTCTTCGGGAAGCGGCGGCGTCGGGGAGAGTGGAGAGAGTCGGGAAGGAGGAGACATCGAGC                  ]




>consensus_9082#2
ACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACATCATCAGCTTG
ACAGGGCAAATACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAA
AGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATG
TAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTAGCAGATCAAG
CCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGCCCTCTCAACTTGTAAC
TTGCACTTCAAATGGTACCCCTGCTCTCCACCCCACGTCGACGGCGCCGTCGATCTGGCC
GCCCGGCCCTCGCCGTCGCCGTCGCCGATGCCGGCCGGATCCAGATTCTCCGGCAGCAGA
GAGGGCGCATCCCCAGCTGGCAGCTCGCCGCCGGTCTTCGGGAAGCGGCGGCGTCGGGGA
GAGTGGAGAGAGTCGGGAAGGAGGAGACATCGAGCCTAGCTCCCATCGATGAC

consensusID : consensus_9082#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 182
fasta sequence

                              [GTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTATTTCTTCAGCCAGCCAA]

[-] EMBL CA757464             [GTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTATTTCTTCAGCCAGCCAA]




>consensus_9082#3
GTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTACCTGCAAAAATACTTTACATAGCATGTA
CAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCA
TGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTATTTCTTCAGCCAGCC
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9082#0      -----------------------------------------------------------T 1
consensus_9082#3      ------------------------------------------------------------
consensus_9082#2      ------------------------------------------------------------
consensus_9082#1      GACCGGCGGCGAGCTGCCAGCTGGGGATGCGCCCTCTCTGCTGCCGGAGAATCTGGATCC 60
                                                                                  

consensus_9082#0      TTTTGACTAACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACATC 61
consensus_9082#3      -------------------------------------------------GTCTCGAGTTT 11
consensus_9082#2      ---------ACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACATC 51
consensus_9082#1      GGCCGGCATCGGCGACGGCGACGGCGAGGGCCGGGCGGCCAGATCGACGGCGCCGTCGAC 120
                                                                            *     

consensus_9082#0      ATCAGCTTGACAGGGCAAATACC-TGCAAAAATACTT-------TACATAGC---ATGTA 110
consensus_9082#3      TTTTTTTTTTTTTTTTTTTTACC-TGCAAAAATACTT-------TACATAGC---ATGTA 60
consensus_9082#2      ATCAGCTTGACAGGGCAAATACC-TGCAAAAATACTT-------TACATAGC---ATGTA 100
consensus_9082#1      GTGGGGTGGAGAGCAGGTACGCCACGCAGCTCTACTCCTAGCCCTAGGTCGCTCTGCGCG 180
                       *    *              **  ***    ****        **  * **     *  

consensus_9082#0      CAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCA 170
consensus_9082#3      CAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCA 120
consensus_9082#2      CAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCA 160
consensus_9082#1      CTGTTCTTTGGCTCCGACTGAATCCATCCGGTAATAAGTTTTGTACCATATCGCCCATTC 240
                      *   ****  **     *  * *   *     **  *   ** *   ***     *    

consensus_9082#0      TGCGGTAACA-AACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGC 229
consensus_9082#3      TGCGGTAACA-AACGAGCATGTAAAAGCAAATAAGATTATTTTTTATTTCTTCAGCCAGC 179
consensus_9082#2      TGCGGTAACA-AACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGC 219
consensus_9082#1      TGAGACAACACGACCTGTTTATTAGCTCGATTT-GATTCTATTCCATCGCCACCCCAGGG 299
                      ** *  ****  **  *  * * *   * * *  **** * **   *  *  *  *  * 

consensus_9082#0      CAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACC 289
consensus_9082#3      CAA--------------------------------------------------------- 182
consensus_9082#2      CAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACC 279
consensus_9082#1      ACACTCACCCCGACTGCAATGGGCAGCGGTAGGGCGTGTATCCGCCCTACCGTTTCAGCT 359
                        *                                                         

consensus_9082#0      ATGGNCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGCATATGTAAATGACCT 349
consensus_9082#3      ------------------------------------------------------------
consensus_9082#2      ATGGCCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGC-TCTCCACCCCAC-- 336
consensus_9082#1      GCAAAAAAAAAAAGGCAGTGAAAAGATCCCCTACTGGGGCACGGCAGGCGACCCCCTGCC 419
                                                                                  

consensus_9082#0      AGTTCACCTATATTTCCATGAAAAAACATAAGGATAGCAAACCTGTGTCACAATCCAGAT 409
consensus_9082#3      ------------------------------------------------------------
consensus_9082#2      -GTCGACGGCGCCGTCGATCTGGCCGCCCGGCCCTCGCCGTCGCCGTCGCCGATGCCGGC 395
consensus_9082#1      GGCCAGCTGCAAAAAAAAAAAGAT--CCCCACGGCAGGCGACCCCCTGCCGAAAAGATGC 477
                                                                                  

consensus_9082#0      GATGCTGAGGATTGTCAGCAACAGCGCAA-CAAAATTTGAGCAATGGTTAGGGAACAAAA 468
consensus_9082#3      ------------------------------------------------------------
consensus_9082#2      CGGATCCAGATTCTCCGGCAGCAGAGAGGGCGCATCCCCAGCTGGCAGCTCGCCGCCGGT 455
consensus_9082#1      CCTATAGAGGCACACAGTCGGGTCTCTCGGTGGAGGCAGCGCTAGACACTAGCGCTTGGC 537
                                                                                  

consensus_9082#0      TATGAGCTGCTAGTAGATTTGAAAAGACTAGATAGATTCATAAAGTTTTAAGCAGTTCTG 528
consensus_9082#3      ------------------------------------------------------------
consensus_9082#2      CTTCGGGAAGCGGCGGCGTCGGGGAGAGTGGAGAGAGTCGGGAAGGAGGAGACA------ 509
consensus_9082#1      TTTTTGAAATTTGTAACATTAGATTTTTTTTTCTATGTTGAACTCATTGCTACTCATGGG 597
                                                                                  

consensus_9082#0      TGT-TCAAGACAATCTGCTACCGGTAGCTATATATCTCTGGTTTCACTAAAGCTGGAGCC 587
consensus_9082#3      ------------------------------------------------------------
consensus_9082#2      ----TCGAGCCTAGCTCCCATCGATGAC-------------------------------- 533
consensus_9082#1      TTAATCGAACCAATTGCAATTTGACCATTCCATCCTTTGGATGCATAGTTCGAT------ 651
                                                                                  

consensus_9082#0      TGGCCTTCAATAATGCACTACAATTTCACTTGACTTTAGCAATAGAAACATTCCTGCTTG 647
consensus_9082#3      ------------------------------------------------------------
consensus_9082#2      ------------------------------------------------------------
consensus_9082#1      ------------------------------------------------------------
                                                                                  

consensus_9082#0      GGGTGTAGTGTAGCACATCGCAGTTGCGCCAATATTTACTCCAACTGCCATGGTCTTTGA 707
consensus_9082#3      ------------------------------------------------------------
consensus_9082#2      ------------------------------------------------------------
consensus_9082#1      ------------------------------------------------------------
                                                                                  

consensus_9082#0      CTACAGAGAGATCCGGAAAGTGCTTTTTAATATTAAAACCACTTTTTGAAAAAATAATTA 767
consensus_9082#3      ------------------------------------------------------------
consensus_9082#2      ------------------------------------------------------------
consensus_9082#1      ------------------------------------------------------------
                                                                                  

consensus_9082#0      TTATGTGAGCCCACC 782
consensus_9082#3      ---------------
consensus_9082#2      ---------------
consensus_9082#1      ---------------