cluster # 9083

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Oryza sativa
cluster # 9083 cluster # 9083 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9083#0 length = 552 sequences # 2

consensus_9083#1 length = 504 sequences # 4

consensusID : consensus_9083#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 552
fasta sequence

                              [GCCGGACGCTTGGGGGGTTTTAGGTTTTTGGAGGCTCGGAGCCCATGGAGAACTCCGCCGAGATGCCAGAGATTCATCGAGCAAGAGCAGCCAGAAGGCCAATGGTGAGCCGAGATGGTCGGCCAAGCTCACACAGCGTGTGCTGGGACCAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTC-CGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCCAACGGTTTGAGATGCCAGTAGCATGGCAGCACCCTGAAGTGGACTACTTATATCAAATGCCTCTTTCTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACACAAAGCGCGCTGTTGTCTCCAGTTTTTTGTCATGTGATGCTTTGATCTCTACCCGGCGACGCCCCATTTATATTGCAGGCAATCTCTAGGCATAATGCTTATTACTTCCGCAGTGCATGATATTGATTAATCTTTTATTTGCTTAAAAAAAAAAA]

[+] EMBL BI799670             [GCCGGACGCTTGGGGGGTTTTAGGTTTTTGGAGGCTCGGAGCCCATGGAGAACTCCGCCGAGATGCCAGAGATTCATCGAGCAAGAGCAGCCAGAAGGCCAATGGTGAGCCGAGATGGTCGGCCAAGCTCACACAGCGTGTGCTGGGACCAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTC CGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCCAACGGTTTGAGATGCCAGTAGCATGGCAGCACCCTGAAGTGGACTACTTATATCAAATGCCTCTTTCTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACACAAAGCGCGCTGTTGTCTCCAGTTTTTTGTCATGTGATGCTTTGATCTCTACCCGGCGACGCCCCATTTATATTGCAGGCAATCTCTAGGCATAATGCTTATTACTTCCGCAGTGCATGATATTGATTAATCTTTTATTTGCTTAAAAAAAAAAA]
[+] EMBL BE228803             [                                                                                                                                                                      cgatctcgtGCGAATTCGGCACGAGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCAAACGGTTTGAGATG CAGTAGCATGGCAGCA CCTGAAGTGGACTACTTATATCANATGCCTCTTTCTTTTTTCACTTAACTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACA AAAGCGCGCTGTTGTCTCCAGTTTTTTGTCATGTGATGC                                                                                                                   ]




>consensus_9083#0
GCCGGACGCTTGGGGGGTTTTAGGTTTTTGGAGGCTCGGAGCCCATGGAGAACTCCGCCG
AGATGCCAGAGATTCATCGAGCAAGAGCAGCCAGAAGGCCAATGGTGAGCCGAGATGGTC
GGCCAAGCTCACACAGCGTGTGCTGGGACCAAGTGCATCACCAGCACTCCAGGAAGCAAG
TTCAGCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGC
GTGATCATCGCCCAACGGTTTGAGATGCCAGTAGCATGGCAGCACCCTGAAGTGGACTAC
TTATATCAAATGCCTCTTTCTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACA
AATTTAACAGTGAATTGTTTTATGTAATTCTGGGACACAAAGCGCGCTGTTGTCTCCAGT
TTTTTGTCATGTGATGCTTTGATCTCTACCCGGCGACGCCCCATTTATATTGCAGGCAAT
CTCTAGGCATAATGCTTATTACTTCCGCAGTGCATGATATTGATTAATCTTTTATTTGCT
TAAAAAAAAAAA

consensusID : consensus_9083#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 504
fasta sequence

                              [AAGACGACGGCGGCGGCGGCGGCTTCGCGATTCCTCCCCTTCTCGTCGGCTCCAAGCAAAAGCGTAGCTAGGGTTTTAGGTTTTTGGAGGCTCGGAGCCATGGAGAACTCCGCCGAGATGCAGAGATTCATCGAGCAAGAGCAGCAGAAGGCAATGGTGAGCGAGATGGTCGGCAAGCTCACAAGCGTGTGCTGGGACAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCAAACGGTTTGAGATGCAGTAGCATGGCAGCACCTGAAGTGGACTACTTATATCAAATGCCTC-TTTTTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACAAAAGCGCGCTGTTGTCTCCAGTTTTTTGTCANAAANNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CF329128             [AAGACGACGGCGGCGGCGGCGGCTTCGCGATTCCTCCCCTTCTCGTCGGCTCCAAGCAAAAGCGTAGCTAGGGTTTTAGGTTTTTGGAGGCTCGGAGCCATGGAGAACTCCGCCGAGATGCAGAGATTCATCGAGCAAGAGCAGCAGAAGGCAATGGTGAGCGAGATGGTCGGCAAGCTCACAAGCGTGTGCTGGGACAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCAAACGGTTTGAGATGCAGTAGCATGGCAGCACCTGAAGTGGACTACTTATATCAAATGCCTC  TTTTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACAAAAGCGCGCTGTTGTCTCC                                          ]
[+] EMBL AK121683             [                         CGCGATTCCTCCCCTTCTCGTCGGCTCCAAGCAAAAGCGTAGCTAGGGTTTTAGGTTTTTGGAGGCTCGGAGCCATGGAGAACTCCGCCGAGATGCAGAGATTCATCGAGCAAGAGCAGCAGAAGGCAATGGTGAGCGAGGTGGTCGGCAAGCTCACAAGCGTGTGCTGGGACAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCAAACGGTTTGAGATGCAGTAGCATGGCAGCACCTGAAGTGGACTACTTATATCAAATGCCTCTTTTTTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATCGTTTTATGTAATTCTGGGACAAAAGCGCGCTGTTGTCTCCA                                         ]
[+] EMBL CA756053             [                                                                        GTTTTAGTTTTTTGGAGGCTCGGAGCCATGAAGAACTCCGCCGAGATGCAGAGATTCATCGAGCAAGAGCAGCAGAAGGCAATGGTGAGCGAGATGGTCGGCAAGCTCACAAGCGTGTGCTGGGACAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCCAAACGGTTTGAGATGCAGTAGCATGGCAGCACCTGAAGTGGACTACTTATATCANATGCCTC TTTTTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACAAAAGCGCGCTGTTGTCTCCAGTTTTTTGTCANAAANNNNNNNNNNNNNNNNNNNNNNNNNN]
[-] EMBL D42719               [                                                                                                                                                                                                                                                                                                                                                                                               CCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTGGGACAAAAGCGCGCTGTTGTCTCCANNTTTT                                   ]




>consensus_9083#1
AAGACGACGGCGGCGGCGGCGGCTTCGCGATTCCTCCCCTTCTCGTCGGCTCCAAGCAAA
AGCGTAGCTAGGGTTTTAGGTTTTTGGAGGCTCGGAGCCATGGAGAACTCCGCCGAGATG
CAGAGATTCATCGAGCAAGAGCAGCAGAAGGCAATGGTGAGCGAGATGGTCGGCAAGCTC
ACAAGCGTGTGCTGGGACAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTCCGGG
GAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGATCATCGCC
AAACGGTTTGAGATGCAGTAGCATGGCAGCACCTGAAGTGGACTACTTATATCAAATGCC
TCTTTTTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAA
TTGTTTTATGTAATTCTGGGACAAAAGCGCGCTGTTGTCTCCAGTTTTTTGTCANAAANN
NNNNNNNNNNNNNNNNNNNNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9083#0      ------------------------------------------------------GCCGGA 6
consensus_9083#1      AAGACGACGGCGGCGGCGGCGGCTTCGCGATTCCTCCCCTTCTCGTCGGCTCCAAGCAAA 60
                                                                              *  *

consensus_9083#0      CGCTTGG--GGGGTTTTAGGTTTTTGGAGGCTCGGAGCCCATGGAGAACTCCGCCGAGAT 64
consensus_9083#1      AGCGTAGCTAGGGTTTTAGGTTTTTGGAGGCTCGGAGCC-ATGGAGAACTCCGCCGAGAT 119
                       ** * *   ***************************** ********************

consensus_9083#0      GCCAGAGATTCATCGAGCAAGAGCAGCCAGAAGGCCAATGGTGAGCCGAGATGGTCGGCC 124
consensus_9083#1      GC-AGAGATTCATCGAGCAAGAGCAGC-AGAAGGC-AATGGTGAGC-GAGATGGTCGGC- 174
                      ** ************************ ******* ********** ************ 

consensus_9083#0      AAGCTCACACAGCGTGTGCTGGGACCAAGTGCATCACCAGCACTCCAGGAAGCAAGTTCA 184
consensus_9083#1      AAGCTCACA-AGCGTGTGCTGGGAC-AAGTGCATCACCAGCACTCCAGGAAGCAAGTTCA 232
                      ********* *************** **********************************

consensus_9083#0      GCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGA 244
consensus_9083#1      GCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTTGACATGAGCGTGA 292
                      ************************************************************

consensus_9083#0      TCATCGCCCAACGGTTTGAGATGCCAGTAGCATGGCAGCACCCTGAAGTGGACTACTTAT 304
consensus_9083#1      TCATCGCCAAACGGTTTGAGATGC-AGTAGCATGGCAGCACC-TGAAGTGGACTACTTAT 350
                      ******** *************** ***************** *****************

consensus_9083#0      ATCAAATGCCTCTTTCTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATT 364
consensus_9083#1      ATCAAATGCCTCTTTTTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATT 410
                      *************** ********************************************

consensus_9083#0      TAACAGTGAATTGTTTTATGTAATTCTGGGACACAAAGCGCGCTGTTGTCTCCAGTTTTT 424
consensus_9083#1      TAACAGTGAATTGTTTTATGTAATTCTGGGACA-AAAGCGCGCTGTTGTCTCCAGTTTTT 469
                      ********************************* **************************

consensus_9083#0      TGTCATGTGATGCTTTGATCTCTACCCGGCGACGCCCCATTTATATTGCAGGCAATCTCT 484
consensus_9083#1      TGTCANAAANNNNNNNNNNNNNNNNNNNNNNNNNN------------------------- 504
                      *****                                                       

consensus_9083#0      AGGCATAATGCTTATTACTTCCGCAGTGCATGATATTGATTAATCTTTTATTTGCTTAAA 544
consensus_9083#1      ------------------------------------------------------------
                                                                                  

consensus_9083#0      AAAAAAAA 552
consensus_9083#1      --------