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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9095#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1723 fasta sequence
[GACCCTCACGAACACTACTTGATCTTATCTGAGCTTGCCGTCCGGCGGCGCCGCGGCTGCCGGAGTCGCCTCTCCGGCATTCGCGCCGCCACCGCTGTCCTCGTACGGTTGGCGGGAAGGTGGCGCGCTTTGTTCGGGGAAAGAGGCGGGTTTGGTATCCGTGGCGCTCGCCGGCGGTGAGCGATGACGACTGCCCGCGGTCGGAGCGCGTGCGATGATGGCCGCGCGGGTTCACCAAAACAACAAACAGATCACAATGTTTTGCGTTTTTTCTGCCATTGTTTTATTGATGATTTTTTTATTCGGAGTTCTATTCATTTAGTTGTTCTCGTATTAGTCAATGTGCGTTGGGTTGTTAGTGGTTTCGTAGATCCTGTTTGGCAATAGTGGATGTAAAAGCGCTTTTTGTTTGTGTAGAATGTGTTAGGATAGTATACAAATGTTTTGTAATTGAACATGTGCATAGATATGTTAGCATTGTACTTGTTGAGCTTACTTTGTAAGTTTGGGCATATCGAATTTTGCTTAATTATCATTGAAACCTTGTTTTCATCCTAGTTTTGTAGTTTAGTTTTTAAATATGTCCATATTACAGTATCACTCCACTTCAGTTCAATGTCATGTATATTAGCATGCCATGTTTTCGATGATGTTGTAGGTTTATATCAATCAATTATTAGCTTAAAGAGGATGATATACAGAATTCTATTCTGTGGACCAAACGGAACCTTGATGGTTTGAGGACAGTCCCTTCAATGATATACAAATCAAATATTTTCTTGTGTCCTTGAGAAATTTGGAAGACGCACTGTTAAAATCCATGTCTTTTTTGCTATGCATGGCTGATGTGGACTCTAATTTCTCCTCGGTTTTGAACTTTTGATGCGGACTCTAATTGCAAGATCCTTTTGAAAATCGTGGTTTTTCTTCCACAATGTGGTTTTGACTAAATAAACGTTCAAAGTTTAAAAAAAAAGCCCTCATGACTTGACTTGTGCATTTTTGTATCAACCTGAATCAGCTCAGCATCTTTTCTTGGTTTGCAACATTGCATAAGTTTGTAGGGTTTTAGAAGCCGTGCAGAGCACTACAACAGTGCCTACAATCCGTCTGTTGGATGCACGGCCTTTATGTGATCATTCTAATGGAGTAATGGCCTTCCATTGCTATATCTGGAACATATAGATAACAAGTCTTGTTTTGAGTGCAAAAACTGTCACTTTGATGTGATCTTTTGAATTTGTACAAATTTTAATAGTGGGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTCTGAATATGACTCTGAACGTTGGTGTGAAGTTGCAACAACGGGAAGATGGCGAGTATGTTGAAGAAAACTGATGCAGTCATGAAGATCATATTTAATCTTTTCTACTACCAGTTGTTGTCGATGGCTTCTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCACCTGCTTTGCTTT-CCCTGTTC-CCAAATGTACTCTGAAAATAAGAACTATGTTATTTCTCTTCATATCAAATGTATAAATGGTTACCCTGTTAAAAGAGATTAATGAACTGTCATGTGG]
[+] EMBL AK121957 [GACCCTCACGAACACTACTTGATCTTATCTGAGCTTGCCGTCCGGCGGCGCCGCGGCTGCCGGAGTCGCCTCTCCGGCATTCGCGCCGCCACCGCTGTCCTCGTACGGTTGGCGGGAAGGTGGCGCGCTTTGTTCGGGGAAAGAGGCGGGTTTGGTATCCGTGGCGCTCGCCGGCGGTGAGCGATGACGACTGCCCGCGGTCGGAGCGCGTGCGATGATGGCCGCGCGGGTTCACCAAAACAACAAACAGATCACAATGTTTTGCGTTTTTTCTGCCATTGTTTTATTGATGATTTTTTTATTCGGAGTTCTATTCATTTAGTTGTTCTCGTATTAGTCAATGTGCGTTGGGTTGTTAGTGGTTTCGTAGATCCTGTTTGGCAATAGTGGATGTAAAAGCGCTTTTTGTTTGTGTAGAATGTGTTAGGATAGTATACAAATGTTTTGTAATTGAACATGTGCATAGATATGTTAGCATTGTACTTGTTGAGCTTACTTTGTAAGTTTGGGCATATCGAATTTTGCTTAATTATCATTGAAACCTTGTTTTCATCCTAGTTTTGTAGTTTAGTTTTTAAATATGTCCATATTACAGTATCACTCCACTTCAGTTCAATGTCATGTATATTAGCATGCCATGTTTTCGATGATGTTGTAGGTTTATATCAATCAATTATTAGCTTAAAGAGGATGATATACAGAATTCTATTCTGTGGACCAAACGGAACCTTGATGGTTTGAGGACAGTCCCTTCAATGATATACAAATCAAATATTTTCTTGTGTCCTTGAGAAATTTGGAAGACGCACTGTTAAAATCCATGTCTTTTTTGCTATGCATGGCTGATGTGGACTCTAATTTCTCCTCGGTTTTGAACTTTTGATGCGGACTCTAATTGCAAGATCCTTTTGAAAATCGTGGTTTTTCTTCCACAATGTGGTTTTGACTAAATAAACGTTCAAAGTTTAAAAAAAAAGCCCTCATGACTTGACTTGTGCATTTTTGTATCAACCTGAATCAGCTCAGCATCTTTTCTTGGTTTGCAACATTGCATAAGTTTGTAGGGTTTTAGAAGCCGTGCAGAGCACTACAACAGTGCCTACAATCCGTCTGTTGGATGCACGGCCTTTATGTGATCATTCTAATGGAGTAATGGCCTTCCATTGCTATATCTGGAACATATAGATAACAAGTCTTGTTTTGAGTGCAAAAACTGTCACTTTGATGTGATCTTTTGAATTTGTACAAATTTTAATAGTGGGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTCTGAATATGACTCTGAACGTTGGTGTGAAGTTGCAACAACGGGAAGATGGCGAGTATGTTGAAGAAAACTGATGCAGTCATGAAGATCATATTTAATCTTTTCTACTACCAGTTGTTGTCGATGGCTTCTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCACCTGCTTTGCTTT CCCTGTTC CCAAATGTACTCTGAAAATAAGAACTATGTTATTTCTCTTCATATCAAATGTATAAATGGTTACCCTGTTAAAAGAGATTAATGAACTGTCATGTGG]
[+] EMBL CB637842 [ GATCTTATCTGAGCTTGCCGTCCGGCGGCGCCGCGGCTGCCGGAGTCGCCTCTCCGGCATTCGCGCCGCCACCGCTGTCCTCGTACGGTTGGCGGGAAGGTGGCGCGCTTTGTTCGGGGAAAGAGGCGGGTTTGGTATCCGTGGCGCTCGCCGGCGGTGAGCGATGACGACTGCCCGCGGTCGGAGCGCGTGCGATGATGGCCGCGCGGGTTCACCAAAACAACAAACAGATCACAATGTTTTGCGTTTTTTCTGCCATTGTTTTATTGATGATTTTTTTATTCGGAGTTCTATTCATTTAGTTGTTCTCGTCTTAGTCAATGTGCGTTGGGTTGTTAGTGGTTTCGTAGATCCTGTTTGGCAATAGTGGATGTAAAAGCGCTTTTTGTTTGTGTAGAATGTGTTAGGATAGTCTACAAATGTTTTGTAATTGAACATGTGCACTTATATGTTAGCATTGTACTTGTTGAG ]
[+] EMBL CB648565 [ CCGGAGTCGCCTCTCCGGCATTCGCGCCGCCACCCCTGTCCTCGTACGGTTGGCGGGAAGGTGGCGCGCTTTGTTCGGGGAAAGAGGCGGGTTTGGTATCCGTGGCGCTCGCCGGCGGTGAGCGATGACGACTGCCCGCGGTCGGAGCGCGTGCGATGATGGCCGCGCGGGTTCACCAAAACAACAAACAGATCACAATGTTTTGCGTTTTTTCTGCCATTGTTTTATTGATGATTTTTTTATTCGGAGTTCTATTCATTTAGTTGTTCTCGTATTAGTCAATGTGCGTTGGGTTGTTAGTGGTTTCGTAGATCCTGTTTGGCAATAGTGGATGTAAAAGCGCTTTTTGTTTGTGTAGAATGTGTTAGGATAGTATACAAATGTTTTGTAATTGAACATGTGCATAGATATGTTAGCATTGTACTTGTTGAGCTTACTTTGTAAGTTTGGGCATATCGAATTTTGCTTAATTATCATTGAAACCTTGTTTTCATCCTAGTTTTGTAGTTTAGTTTTTAAATATGTCCATATTACAGTATCACTCCACTTCAGTTCAATGTCATGTATATTACCATGCCATGTTTTCGATGATGTTGTAGGTTTATATCAATCCATTATTAGCTTAAAGAGGATGATATACAGAATTCTATTCTGTGGACC AACGGAACCTTGATGGTTTGAGGACAGTCC ]
[-] EMBL CB637843 [ TCTAATGGAGTAATGGCCTTCCATTGCTATATCTGGAACATATAGATAACAAGTCTTGTTTTGAGTGCAAAAACTGTCACTTTGATGTGATCTTTTGAATTTGTACAAATTTTAATAGTGGGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTCTGAATATGACTCTGAACGTTGGTGTGAAGTTGCAACAACGGGAAGATGGCGAGTATGTTGAAGAAAACTGATGCAGTCATGAAGATCATATTTAATCTTTTCTACTACCAGTTGTTGTCGATGGCTTCTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCACCTGCTTTGCTTTCCCCTGTTCNCCAAATGTACTCTGAAAATAAGAACTATGTT TTTCTCTTCATATCAAATGTATAAATGGTTACCCTGTTAAAAGAGATTAAa ]
consensusID : consensus_9095#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence
[TGTAGGGTTTTAGAAGCCGTGCAGAGCACTACAACAGTGCCTACAATCCGTTTGTTGGAGGCACGGCCTTTATGTGATCATTTTAATGGAGTAATGGCCTTCCATTGCTATATTTGGAACATATAGATACCAAGTTTTGTTTTGAGTGCAAAAACTGTCACTTTGATGGGATCTTTTGAATTTGTACAAATTTTAATAGTGGGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTTTGAATATGACTTTGAACGTTGGGGGGAAGTTGCAACACCGGGAAGATGGCGAGTATGTTGAAGAAAACTGATGCAGTCATGAAGATCATATTTAAT-TTTTTTTACTACCAGTTGTTGTCGAGGGGTTTTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCCCCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGGTTTGTCCCCGACTCGATACTTCCCTTTTAGTTTTAGGTTGAATAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCCCCTGCTTTGGTTTCCCGGTTCCCAAATGTACTTTGAAAATAAGAACTATGTTATTT-CTCTTCATATCAAATGTATAAAATGGTTACCCCTTTTAAGGGGGGATTAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAGGGGCGGC]
[-] EMBL CB648566 [TGTAGGGTTTTAGAAGCCGTGCAGAGCACTACAACAGTGCCTACAATCCGTTTGTTGGAGGCACGGCCTTTATGTGATCATTTTAATGGAGTAATGGCCTTCCATTGCTATATTTGGAACATATAGATACCAAGTTTTGTTTTGAGTGCAAAAACTGTCACTTTGATGGGATCTTTTGAATTTGTACAAATTTTAATAGTGGGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTTTGAATATGACTTTGAACGTTGGGGGGAAGTTGCAACACCGGGAAGATGGCGAGTATGTTGAAGAAAACTGATGCAGTCATGAAGATCATATTTAAT TTTTTTTACTACCAGTTGTTGTCGAGGGGTTTTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCCCCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGGTTTGTCCCCGACTCGATACTTCCCTTTTAGTTTTAGGTTGAATAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCCCCTGCTTTGGTTTCCCGGTTCCCAAATGTACTTTGAAAATAAGAACTATGTTATTT CTCTTCATATCAAATGTATAAAATGGTTACCCCTTTTAAGGGGGGATTAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAGGGG ]
[-] EMBL AU225873 [ ccgcTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTCTGAATATGACTCTGAACGTTGGTGTGAAGTTGCAACAACGGGAAGATGGCGAGTATGTTGAAGAAAACTGATGCAGTCATGAAGATCATATTTAATCTTTTNNTACTACCAGTTGTTGTCGATGGCTTCTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCACCTGCTTTGCTTTCCCTGTTCCCAAATGTACTCTGAAAATAAGAACTATGTTATTTNNTNTTCATATCAAATGTAT AAATGGTTA CCCTGTTAA AAGAGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9095#0 GACCCTCACGAACACTACTTGATCTTATCTGAGCTTGCCGTCCGGCGGCGCCGCGGCTGC 60
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 CGGAGTCGCCTCTCCGGCATTCGCGCCGCCACCGCTGTCCTCGTACGGTTGGCGGGAAGG 120
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 TGGCGCGCTTTGTTCGGGGAAAGAGGCGGGTTTGGTATCCGTGGCGCTCGCCGGCGGTGA 180
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 GCGATGACGACTGCCCGCGGTCGGAGCGCGTGCGATGATGGCCGCGCGGGTTCACCAAAA 240
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 CAACAAACAGATCACAATGTTTTGCGTTTTTTCTGCCATTGTTTTATTGATGATTTTTTT 300
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 ATTCGGAGTTCTATTCATTTAGTTGTTCTCGTATTAGTCAATGTGCGTTGGGTTGTTAGT 360
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 GGTTTCGTAGATCCTGTTTGGCAATAGTGGATGTAAAAGCGCTTTTTGTTTGTGTAGAAT 420
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 GTGTTAGGATAGTATACAAATGTTTTGTAATTGAACATGTGCATAGATATGTTAGCATTG 480
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 TACTTGTTGAGCTTACTTTGTAAGTTTGGGCATATCGAATTTTGCTTAATTATCATTGAA 540
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 ACCTTGTTTTCATCCTAGTTTTGTAGTTTAGTTTTTAAATATGTCCATATTACAGTATCA 600
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 CTCCACTTCAGTTCAATGTCATGTATATTAGCATGCCATGTTTTCGATGATGTTGTAGGT 660
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 TTATATCAATCAATTATTAGCTTAAAGAGGATGATATACAGAATTCTATTCTGTGGACCA 720
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 AACGGAACCTTGATGGTTTGAGGACAGTCCCTTCAATGATATACAAATCAAATATTTTCT 780
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 TGTGTCCTTGAGAAATTTGGAAGACGCACTGTTAAAATCCATGTCTTTTTTGCTATGCAT 840
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 GGCTGATGTGGACTCTAATTTCTCCTCGGTTTTGAACTTTTGATGCGGACTCTAATTGCA 900
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 AGATCCTTTTGAAAATCGTGGTTTTTCTTCCACAATGTGGTTTTGACTAAATAAACGTTC 960
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 AAAGTTTAAAAAAAAAGCCCTCATGACTTGACTTGTGCATTTTTGTATCAACCTGAATCA 1020
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 GCTCAGCATCTTTTCTTGGTTTGCAACATTGCATAAGTTTGTAGGGTTTTAGAAGCCGTG 1080
consensus_9095#1 ---------------------------------------TGTAGGGTTTTAGAAGCCGTG 21
*********************
consensus_9095#0 CAGAGCACTACAACAGTGCCTACAATCCGTCTGTTGGATGCACGGCCTTTATGTGATCAT 1140
consensus_9095#1 CAGAGCACTACAACAGTGCCTACAATCCGTTTGTTGGAGGCACGGCCTTTATGTGATCAT 81
****************************** ******* *********************
consensus_9095#0 TCTAATGGAGTAATGGCCTTCCATTGCTATATCTGGAACATATAGATAACAAGTCTTGTT 1200
consensus_9095#1 TTTAATGGAGTAATGGCCTTCCATTGCTATATTTGGAACATATAGATACCAAGTTTTGTT 141
* ****************************** *************** ***** *****
consensus_9095#0 TTGAGTGCAAAAACTGTCACTTTGATGTGATCTTTTGAATTTGTACAAATTTTAATAGTG 1260
consensus_9095#1 TTGAGTGCAAAAACTGTCACTTTGATGGGATCTTTTGAATTTGTACAAATTTTAATAGTG 201
*************************** ********************************
consensus_9095#0 GGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTCTGAAT 1320
consensus_9095#1 GGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTTTGAAT 261
****************************************************** *****
consensus_9095#0 ATGACTCTGAACGTTGGTGTGAAGTTGCAACAACGGGAAGATGGCGAGTATGTTGAAGAA 1380
consensus_9095#1 ATGACTTTGAACGTTGGGGGGAAGTTGCAACACCGGGAAGATGGCGAGTATGTTGAAGAA 321
****** ********** * ************ ***************************
consensus_9095#0 AACTGATGCAGTCATGAAGATCATATTTAATCTTTTCTACTACCAGTTGTTGTCGATGGC 1440
consensus_9095#1 AACTGATGCAGTCATGAAGATCATATTTAATTTTTTTTACTACCAGTTGTTGTCGAGGGG 381
******************************* **** ******************* **
consensus_9095#0 TTCTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCACCGACTCGATACTTCCCTTTTA 1500
consensus_9095#1 TTTTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCCCCGACTCGATACTTCCCTTTTA 441
** ********************************** **********************
consensus_9095#0 GTTTTAGGTTGACTAAGGCTAGGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGG 1560
consensus_9095#1 GTTTTAGGTTGACTAAGGCTAGGTTTGTCCCCGACTCGATACTTCCCTTTTAGTTTTAGG 501
***************************** ******************************
consensus_9095#0 TTGACTAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCACCTGCTTTGCTTTCC 1620
consensus_9095#1 TTGAATAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCCCCTGCTTTGGTTTCC 561
**** *************************************** ********* *****
consensus_9095#0 CTGTTCCCAAATGTACTCTGAAAATAAGAACTATGTTATTTCTCTTCATATCAAATGTAT 1680
consensus_9095#1 CGGTTCCCAAATGTACTTTGAAAATAAGAACTATGTTATTTCTCTTCATATCAAATGTAT 621
* *************** ******************************************
consensus_9095#0 AAA-TGGTTACCCTGTTAAAAGAG--ATTAATGAACTGTCATGTGG-------------- 1723
consensus_9095#1 AAAATGGTTACCCCTTTTAAGGGGGGATTAAAAAAAAAAAAAAAAAAAAAAAAACAAAAA 681
*** ********* ** ** * * ***** ** *
consensus_9095#0 --------
consensus_9095#1 GGGGCGGC 689
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||