Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9100 cluster # 9100       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9100#0 length = 1307 sequences # 6  

consensusID : consensus_9100#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1307
fasta sequence
                              [CCCGAACGCCACGGAGCAGCATGGCCGCGCCGCCGCCGCCGGCGAACCAGTTCGTCTACATCGACGCGGCGGCGCTCCACTCCGTCCTCCCCTTCCCGTCCCTGATCTCCCACCTCGGCGCCGGCCTCCCCGCCTTCGCCGCCGGCATCCACTGCCCGCACCGCGTCTCCTTCCCGCTCCCCACCGCGCCATCCGCCTCCCTCCTCCTCATGCCATCCTGGAGCGCGCACCCCTCGCTCCCCTACCTCGCGCTCAAGGCCGTCACCTCGTTTCCGGCCAACTCCCCGCGCCTCCCCTCCGTCCACGCCGCCGTCTCCCTCTTCGACTCCGCCTCCGGCGTCCCCCTCGCCTCCCTCGACGGCTCCGCGCTCACCCTCCTCCGCACCGCCGCCGTGTCCGCGCTCGCCGCGTCCCTCCTGGCATCCCCCACCCGCCCGCCCTCCACCCTCGCGCTCGCCGGCGCCGGCGCCCTCGCGCCCTACCTCGCCGAAGCCCACCTCTCCGCCCTCCCGTCCATCTCCCGAATCCTCATCTGGAACCGCACCAAGGCCAAATCCGCCGCGCTCGCCGCCAGGCTCCGTGACGCGCACCCGGGGGTCGCCGTCGAGGAGGCGGACAGCATGGACGAGGCGGTGTCCGCGGCGGACGTCGTGAGCTGCGCGACGGGGTCGCAGGAGCCGATCGTGCGCGGGGAGCTACTGAAGCACGGGGCACACCTGGACCTCGTGGGCTCGTTCACGCCGGCGATGAGGGAGTGCGACGACGAGGCGCTGCGGCGGGGGAGGGTGTTCATCGACTTCGAGGCGGCGATGCAGGAGGCCGGAGAGCTGGTGGGCGCGCTCCAGCGCGGCGTGCTCCGGAGGGAGGACGTGGCCGGGACGCTCGCGGAGCTTGCCGCCGGGAGCGTGGCTGGGCGGCGCTGCGACGACGAGATCACGGTGTTCAAGTCCGTCGGGACGGCGGTGGTCGATCTTTTGGCGGCGCAGCTCGCCTACGAGACTTACATTGCTACAACCACCAAGAAGACATGAACTCGATGCATCATGGATGGGTTAGTTTCAGAGACTGCAAGAAGGGTGTTTCCTTTCAGAGATTCGTCATAGAAGTACAAATAAATTGGTGAGAATGGTTATGATCATTCTCCATAGCATTGTTTACTCGCCACTGATTAAAATAAAAATTTAGTATGGCCTTGCAATTCTCTGTTCTTTGTACCTGATGATAAGATGTTTTCTGCAAGGAGTACTGTAATTCGATTGTTCGCTTTTGTAACCTATGAACTGGGGTATCATATCTGTTTTATGGAT]

[+] EMBL AK106036             [CCCGAACGCCACGGAGCAGCATGGCCGCGCCGCCGCCGCCGGCGAACCAGTTCGTCTACATCGACGCGGCGGCGCTCCACTCCGTCCTCCCCTTCCCGTCCCTGATCTCCCACCTCGGCGCCGGCCTCCCCGCCTTCGCCGCCGGCATCCACTGCCCGCACCGCGTCTCCTTCCCGCTCCCCACCGCGCCATCCGCCTCCCTCCTCCTCATGCCATCCTGGAGCGCGCACCCCTCGCTCCCCTACCTCGCGCTCAAGGCCGTCACCTCGTTTCCGGCCAACTCCCCGCGCCTCCCCTCCGTCCACGCCGCCGTCTCCCTCTTCGACTCCGCCTCCGGCGTCCCCCTCGCCTCCCTCGACGGCTCCGCGCTCACCCTCCTCCGCACCGCCGCCGTGTCCGCGCTCGCCGCGTCCCTCCTGGCATCCCCCACCCGCCCGCCCTCCACCCTCGCGCTCGCCGGCGCCGGCGCCCTCGCGCCCTACCTCGCCGAAGCCCACCTCTCCGCCCTCCCGTCCATCTCCCGAATCCTCATCTGGAACCGCACCAAGGCCAAATCCGCCGCGCTCGCCGCCAGGCTCCGTGACGCGCACCCGGGGGTCGCCGTCGAGGAGGCGGACAGCATGGACGAGGCGGTGTCCGCGGCGGACGTCGTGAGCTGCGCGACGGGGTCGCAGGAGCCGATCGTGCGCGGGGAGCTACTGAAGCCCGGGGCGCACCTGGACCTCGTGGGCTCGTTCACGCCGGCGATGAGGGAGTGCGACGACGAGGCGCTGCGGCGGGGGAGGGTGTTCATCGACTTCGAGGCGGCGATGCAGGAGGCCGGAGAGCTGGTGGGCGCGCTCCAGCGCGGCGTGCTCCGGAGGGAGGACGTGGCCGGGACGCTCGCGGAGCTTGCCGCCGGGAGCGTGGCTGGGCGGCGCTGCGACGACGAGATCACGGTGTTCAAGTCCGTCGGGACGGCGGTGGTCGATCTTTTGGCGGCGCAGCTCGCCTACGAGACTTACATTGCTACAACCACCAAGAAGACATGAACTCGATGCATCATGGATGGGTTAGTTTCAGAGACTGCAAGAAGGGTGTTTCGTTTCAGAGATTCGTCATAGAAGTACAAATAAATTGGTGAGAATGGTTATGATCA TGTCCATAGCA TGTTTACTCGCCACTGATTAAAATAAAAATTTAGTATGGCCTTGCAATTCTCTGTTCTTTGTACCTGATGATAAGATGTTTTCTGCAAGGAGTACTGTAATTCGATTGTTCGCTTTTGTAACCTATGAACTGGGGTATCATATCTGTTTTATGGAT]
[+] EMBL CB663744             [                  GCATGGCCGCGCCGCCGCCGCCGGCGAACCAGTTCGTCTACATCGACGCGGCGGCGCTCCACTCCGTCCTCCCCTTCCCGTCCCTGATCTCCCACCTCGGCGCCGGCCTCCCCGCCTTCGCCGCCGGCATCCACTGCCCGCACCGCGTCTCCTTCCCGCTCCCCACCGCGCCATCCGCCTCCCTCCTCCTCATGCCATCCTGGAGCGCGCACCCCTCGCTCCCCTACCTCGCGCTCAAGGCCGTCACCTCGTTTCCGGCCAACTCCCCGCGCCTCCCCTCCGTCCACGCCGCCGTCTCCCTCTTCGACTCCGCCTCCGGCGTCCCCCTCGCCGGCGTCGACGGCTCCGCGCTCACCCTCCTCCGCACCGCCGCCGTGTCCGCGCTCGCCGCGTCCCTCCTGGCATCCCCCACCCGCCCGCCCTCCACCCTCGCGCTCGCCGGCGCCGGGGCCCTCGCGCCCTACCTCcgc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB624223             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCGCCCTCCCGTCCATCTCCGGAATCCTCATCTGGAACCGCACCAAGGCCAAATCCGCCGCGCTCGCCGCCAGGTTCCGTGACGCGCACCCGGGGGTCGCCGTCGAGGAGGCGGACAGCATGGACGAGGCGGTGTCCGCGGCGGACGTCGTGAGCTGCGCGACGGGGTCGCAGGAGCCGATCGTGCGCGGGGAGCTACTGAAGCACGGGGCACACCTGGACCTCGTGGGCTCGTTCACGCCGGCGATGAGGGAGTGCGACGACGAGGCGCTGCGGCGGGGGAGGGTGTTCATCGACTTCGAGGCGGCGATGCAGGAGGCCGGAGAGCTGGTGGGCGCGCTCCAGCGCGGCGTGCTCCGGAGGGAGGACGTGGCCGGGACGCTCGCGGAGCTTGCCGCCGGGAGCGTGGCTGGGCGGCGCTGCGACGACGAGATCACGGTGTTCAAGTCCGTCGGGACGGCGGTGGTCGATCTTTTGGCGGCGCAGCTCGCCTACGAGACTTACATTGCTACAACCACCAAGAAGACATGAACTCGATGCATCATGGATGGGTTAGTTTCAGAGACTGCAAGAAGGGTGTTTCCTTTCAGAGATTCGTCATAGAAGTACAAATAAATTGGTGAGAATGGTTATGATCATTCTCCATAGCATTGTTTACTCGCCACTGATTAAAATAAAAATTTAGTA                                                                                                                        ]
[-] EMBL CB624227             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AATCCGCCGCGCTCGCCGCCAGGCTCCGTGACGCGCACCCGGGGGTCGCCGTCGAGGAGGCGGACAGCATGGACGAGGCGGTGTCCGCGGCGGACGTCGTGAGCTGCGCGACGGGGTCGCAGGAGCCGATCGTGCGCGGGGAGCTACTGAAGCACGGGGCACACCTGGACCTCGTGGGCTCGTTCACGCCGGCGATGAGGGAGTGCGACGACGAGGCGCTGCGGCGGGGGAGGGTGTTCATCGACTTCGAGGCGGCGATGCAGGAGGCCGGAGAGCTGGTGGGCGCGCTCCAGCGCGGCGTGCTCCGGAGGGAGGACGTGGCCGGGACGCTCGCGGAGCTTGCCGCCGGGAGCGTGGCTGGGCGGCGCTGCGACGACGAGATCACGGTGTTCAAGTCCGTCGGGACGGCGGTGGTCGATCTTTTGGCGGCGCAGCTCGCCTACGAGACTTACATTGCTACAACCACCAAGAAGACATGAACTCGATGCATCATGGATGGGTTAGTTTCAGAGACTGCAAGAAGGGTGTTTCCTTTCAGAGATTCGTCATAGAAGTACAAATAAATTGGTGAGAATGGTTATGATCATTCTCCATAGCATTGTTTACTCGCCACTGATTAAAATAAAAATTTAGTATGGCCTTG                                                                                                                ]
[-] EMBL CB624224             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AATCCGCCGCGCTCGCCGCCAGGCTCCGTGACGCGCACCCGGGGGTCGCCGTCGAGGAGGCGGACAGCATGGACGAGGCGGTGTCCGCGGCGGACGTCGTGAGCTGCGCGACGGGGTCGCAGGAGCCGATCGTGCGCGGGGAGCTACTGAAGCACGGGGCACACCTGGACCTCGTGGGCTCGTTCACGCCGGCGATGAGGGAGTGCGACGACGAGGCGCTGCGGCGGGGGAGGGTGTTCATCGACTTCGAGGCGGCGATGCAGGAGGCCGGAGAGCTGGTGGGCGCGCTCCAGCGCGGCGTGCTCCGGAGGGAGGACGTGGCCGGGACGCTCGCGGAGCTTGCCGCCGGGAGCGTGGCTGGGCGGCGCTGCGACGACGAGATCACGGTGTTCAAGTCCGTCGGGACGGCGGTGGTCGATCTTTTGGCGGCGCAGCTCGCCTACGAGACTTACATTGCTACAACCACCAAGAAGACATGAACTCGATGCATCATGGATGGGTTAGTTTCAGAGACTGCAAGAAGGGTGTTTCCTTTCAGAGATTCGTCATAGAAGTACAAATAAATTGGTGAGAATGGTTATGATCATTCTCCATAGCATTGTTTACTCGCCACTGATTAAAATAAAAATTTAGTATGGCCTT                                                                                                                 ]
[-] EMBL CB663745             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CAGCATGGACGAGGCGGTGTCCGCGGCGGACGTCGTGAGCTGCGCGACGGGGTCGCAGGAGCCGATCGTGCGCGGGGAGCTACTGAAGCCCGGGGCGCACCTGGACCTCGTGGGCTCGTTCACGCCGGCGATGAGGGAGTGCGACGACGAGGCGCTGCGGCGGGGGAGGGTGTTCATCGACTTCGAGGCGGCGATGCAGGAGGCCGGAGAGCTGGTGGGCGCGCTCCAGCGCGGCGTGCTCCGGAGGGAGGACGTGGCCGGGACGCTCGCGGAGCTTGCCGCCGGGAGCGTGGCTGGGCGGCGCTGCGACGACGAGATCACGGTGTTCAAGTCCGTCGGGACGGCGGTGGTCGATCTTTTGGCGGCGCAGCTCGCCTACGAGACTTACATTGCTACAACCACCAAGAAGACATGAACTCGATGCATCATGGATGGGTTAGTTTCAGAGACTGCAAGAAGGGTGTTTCGTTTCAGAGATTCGTCATAGAAGTACAAATAAATTGGTGAGAATGGTTATGATCA TGTCCATAGCA TGTTTACTCGCCACTGATTAAAATAAAAATTTAGTATGGCCTTGCAATTCTCTGTTCTTTGTACCTGATGATAAGATGTTTTCTGCAAGGAGTACTGTAATTCGATTGTTCGCTTTTGTAACCTATGAACTGGGGTATCATATCTGTT        ]


>consensus_9100#0 CCCGAACGCCACGGAGCAGCATGGCCGCGCCGCCGCCGCCGGCGAACCAGTTCGTCTACA TCGACGCGGCGGCGCTCCACTCCGTCCTCCCCTTCCCGTCCCTGATCTCCCACCTCGGCG CCGGCCTCCCCGCCTTCGCCGCCGGCATCCACTGCCCGCACCGCGTCTCCTTCCCGCTCC CCACCGCGCCATCCGCCTCCCTCCTCCTCATGCCATCCTGGAGCGCGCACCCCTCGCTCC CCTACCTCGCGCTCAAGGCCGTCACCTCGTTTCCGGCCAACTCCCCGCGCCTCCCCTCCG TCCACGCCGCCGTCTCCCTCTTCGACTCCGCCTCCGGCGTCCCCCTCGCCTCCCTCGACG GCTCCGCGCTCACCCTCCTCCGCACCGCCGCCGTGTCCGCGCTCGCCGCGTCCCTCCTGG CATCCCCCACCCGCCCGCCCTCCACCCTCGCGCTCGCCGGCGCCGGCGCCCTCGCGCCCT ACCTCGCCGAAGCCCACCTCTCCGCCCTCCCGTCCATCTCCCGAATCCTCATCTGGAACC GCACCAAGGCCAAATCCGCCGCGCTCGCCGCCAGGCTCCGTGACGCGCACCCGGGGGTCG CCGTCGAGGAGGCGGACAGCATGGACGAGGCGGTGTCCGCGGCGGACGTCGTGAGCTGCG CGACGGGGTCGCAGGAGCCGATCGTGCGCGGGGAGCTACTGAAGCACGGGGCACACCTGG ACCTCGTGGGCTCGTTCACGCCGGCGATGAGGGAGTGCGACGACGAGGCGCTGCGGCGGG GGAGGGTGTTCATCGACTTCGAGGCGGCGATGCAGGAGGCCGGAGAGCTGGTGGGCGCGC TCCAGCGCGGCGTGCTCCGGAGGGAGGACGTGGCCGGGACGCTCGCGGAGCTTGCCGCCG GGAGCGTGGCTGGGCGGCGCTGCGACGACGAGATCACGGTGTTCAAGTCCGTCGGGACGG CGGTGGTCGATCTTTTGGCGGCGCAGCTCGCCTACGAGACTTACATTGCTACAACCACCA AGAAGACATGAACTCGATGCATCATGGATGGGTTAGTTTCAGAGACTGCAAGAAGGGTGT TTCCTTTCAGAGATTCGTCATAGAAGTACAAATAAATTGGTGAGAATGGTTATGATCATT CTCCATAGCATTGTTTACTCGCCACTGATTAAAATAAAAATTTAGTATGGCCTTGCAATT CTCTGTTCTTTGTACCTGATGATAAGATGTTTTCTGCAAGGAGTACTGTAATTCGATTGT TCGCTTTTGTAACCTATGAACTGGGGTATCATATCTGTTTTATGGAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)