These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 874 fasta sequence [GCACAAGCTCGTGCCGAATTCCGCACGAGATCGCTAGCTTATCTCAATCTCGCCACGAGGAAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTTAGCTTAGAGCACGTACGTACGCATCGATGGCGCAGCAGGCGGAGAAGGCGGCGGAGCTGCAGGACCCGGAGATCCGGGCGGAGCTGGACCGGCGCGCCCGCGACGACGGCAAGACCGTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGGCGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGACACCGGCGCCGTGCTCATCGAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATATAGTAGTGTACTAGTGTGTGCATTTCCTTGGTGTATCCATGTGCATGCATGCATGGCAGGCGTACGTATTAGTATTACTCTACGTGACGTGTAAGCTATGCTGGCTACAAAATTTTGGTCCCTGCAGGATTATATTGTAGCCATATGTATGTTAGTATGTATGTACGTGTTCTTCACGTACTGCCCTAGCTACTAGCAAGTCGATCTAGCTATATCGTGTGTGTGTACGTATATTGTGATCGATGTACGAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGTGTTTGTGTGTCTCCGTACGCTACGTTTCTGTGTGTCTGTAGCCATGCATTGTCCTCTTCAAGGCTCCAATGTTATATAACAATAAGTGGTTGATTTCTACTGATGAAAGC] [+] EMBL AA752874 [GCACAAGCTCGTGCCGAATTCCGCACGAGATCGCTAGCTTATCTCAATCTCGCCACGAGGAAATAAAGCCTAGCGCATATTANCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTTAGCTTAGAGCACGTNCGTNCGCATCGATGGCGCAGCA GCGGAGAAGGCGGCGGAGCTGCNGGA CCGGAGATCCGGGCGGAGCTGGACCGGCGCGCCCGCGACGACGGCAAGACCGTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCNACGCCCAGGANCGCCTCNCCGAANGGCNTNNGAAGGGAGGGCTGANCCGCACGACGGANTCCGGCAAGGANCGCGCCGACNACAACACCGGCGCCGTGCTCATCNAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCCGCAAGTGAGACCTACGTNCACTAACGTGCTGGTGTGTTGTGGTTGCTCCATCATATANTANTGTACTAATGTGTGCATTTCCTTGGTGTTTCCATGTNCATGCATGCATGGCA ] [+] EMBL AK122153 [ cgatccATCGCTAGCTTATCTCAATCTCGCCACGAGGAAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTTAGCTTAGAGCACGTACGTACGCATCGATGGCGCAGCAGGCGGAGAAGGCGGCGGAGCTGCAGGACCCGGAGATCCGGGCGGAGCTGGACCGGCGCGCCCGCGACGACGGCAAGACCGTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGGCGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGACACCGGCGCCGTGCTCATCGAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATATAGTAGTGTACTAGTGTGTGCATTTCCTTGGTGTATCCATGTGCATGCATGCATGGCAGGCGTACGTATTAGTATTACTCTACGTGACGTGTAAGCTATGCTGGCTACAAAATTTTGGTCCCTGCAGGATTATATTGTAGCCATATGTATGTTAGTATGTATGTACGTGTTCTTCACGTACTGCCCTAGCTACTAGCAAGTCGATCTAGCTATATCGTGTGTGTGTACGTATATTGTGATCGATGTACGAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGTGTTTGTGTGTCTCCGTACGCTACGTTTCTGTGTGTCTGTAGCCATGCATTGTCCTCTTCAAGGCTCCAATGTTATATAACAATAAGTGGTTG ] [+] EMBL AK064055 [ TCGCTAGCTTATCTCAATCTCGCCACGAGGAAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTTAGCTTAGAGCACGTACGTACGCATCGATGGCGCAGCAGGCGGAGAAGGCGGCGGAGCTGCAGGACCCGGAGATCCGGGCGGAGCTGGACCGGCGCGCCCGCGACGACGGCAAGACCGTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGGCGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGACACCGGCGCCGTGCTCATCGAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATATAGTAGTGTACTAGTGTGTGCATTTCCTTGGTGTATCCATGTGCATGCATGCATGGCAGGCGTACGTATTAGTATTACTCTACGTGACGTGTAAGCTATGCTGGCTACAAAATTTTGGTCCCTGCAGGATTATATTGTAGCCATATGTATGTTAGTATGTATGTACGTGTTCTTCACGTACTGCCCTAGCTACTAGCAAGTCGATCTAGCTATATCGTGTGTGTGTACGTATATTGTGATCGATGTACGAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGTGTTTGTGTGTCTCCGTACGCTACGTTTCTGTGTGTCTGTAGCCATGCATTGTCCTCTTCAAGGCTCCAATGTTATATAACAATAAGTGGTTGATTTCTACTGATGAAAGC] consensusID : consensus_9110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [CGAGCTCGTCCAATNTNGGGCASNKKTAATTCTCAATCTCGCCACGAGGAAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTTAGCTTAGAGCACGTACGTACGCATCGATGGCGCASAGGCGGAGAAGGCGGCGGASTGCAGGACCCGGAGATCCGGGCGGAGCTGGACCSGCGCGCCCGCGACGACGGCAAGACCGTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGCGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGACACCGGCGCCGTGCTCATCTAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATATAGTAGTGTACTAGTGTGTRCATTTCCTTGGGTGTATCCATGTGCATRCATRCATGGCAGGCGTACGTATTAGTAT] [+] EMBL AA754296 [CGAGCTCGTCCAATNTNGGGCASNKKTAATTCTCAATCTCGCCACGAGGAAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTTAGCTTAGAGCACGTACGTACGCATCGATGGCGCASAGGCGGAGAAGGCGGCGGASTGCAGGACCCGGAGATCCGGGCGGAGCTGGACCSGCGCGCCCGCGACGACGGCAAGACCGTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGCGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGACACCGGCGCCGTGCTCATCTAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATATAGTAGTGTACTAGTGTGTRCATTTCCTTGGGTGTATCCATGTGCATRCATRCATGGCAGGCGTACGTATTAGTAT] consensusID : consensus_9110#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 131 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTGGGATCGATGTACAAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGGGTTTGGGGGTCTCCGTACGCTACGTTTCTACTCCTCAGTCCATG] [+] EMBL CF320435 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTGGGATCGATGTACAAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGGGTTTGGGGGTCTCCGTACGCTACGTTTCTACTCCTCAGTCCAT ] [-] EMBL CF320436 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTGTGATCGATGTACGAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGTGTTTGTGTGTCTCCGTACGCTACGTTTCTACTCCTCAGTCCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9110#0 GCACAAGCTCGTGCCGAATTCCGCACGAGATCGCTAGCTTATCTCAATCTCGCCACGAGG 60 consensus_9110#1 ---CGAGCTCGTCCAATNTNGGGCASN-----KKTAATT---CTCAATCTCGCCACGAGG 49 consensus_9110#2 --------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTT 28 * * * * * consensus_9110#0 AAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTT 120 consensus_9110#1 AAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTT 109 consensus_9110#2 TTATTGGGATCGATGTACAA-AGCTGCTGCTTTCTACATCCTGGCTACA-AATGTAATTG 86 ** * * * * *** * ** ** * * * *** * *** * consensus_9110#0 AGCTTAGAG---CACGTACG-TACGCATCGATGGCGCAGCAGGCGGAGAAGGCGGCGGAG 176 consensus_9110#1 AGCTTAGAG---CACGTACG-TACGCATCGATGGCGCAS-AGGCGGAGAAGGCGGCGGAS 164 consensus_9110#2 GGTTTGGGGGTCTCCGTACGCTACGTTTCTACTCCTCAGTCCATG--------------- 131 * ** * * ****** **** ** * * ** * consensus_9110#0 CTGCAGGACCCGGAGATCCGGGCGGAGCTGGACCGGCGCGCCCGCGACGACGGCAAGACC 236 consensus_9110#1 -TGCAGGACCCGGAGATCCGGGCGGAGCTGGACCSGCGCGCCCGCGACGACGGCAAGACC 223 consensus_9110#2 ------------------------------------------------------------ consensus_9110#0 GTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGG 296 consensus_9110#1 GTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGG- 282 consensus_9110#2 ------------------------------------------------------------ consensus_9110#0 CGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGAC 356 consensus_9110#1 CGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGAC 342 consensus_9110#2 ------------------------------------------------------------ consensus_9110#0 ACCGGCGCCGTGCTCATCGAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTG 416 consensus_9110#1 ACCGGCGCCGTGCTCATCTAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTG 402 consensus_9110#2 ------------------------------------------------------------ consensus_9110#0 GGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATAT 476 consensus_9110#1 GGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATAT 462 consensus_9110#2 ------------------------------------------------------------ consensus_9110#0 AGTAGTGTACTAGTGTGTGCATTTCCTTGG-TGTATCCATGTGCATGCATGCATGGCAGG 535 consensus_9110#1 AGTAGTGTACTAGTGTGTRCATTTCCTTGGGTGTATCCATGTGCATRCATRCATGGCAGG 522 consensus_9110#2 ------------------------------------------------------------ consensus_9110#0 CGTACGTATTAGTATTACTCTACGTGACGTGTAAGCTATGCTGGCTACAAAATTTTGGTC 595 consensus_9110#1 CGTACGTATTAGTAT--------------------------------------------- 537 consensus_9110#2 ------------------------------------------------------------ consensus_9110#0 CCTGCAGGATTATATTGTAGCCATATGTATGTTAGTATGTATGTACGTGTTCTTCACGTA 655 consensus_9110#1 ------------------------------------------------------------ consensus_9110#2 ------------------------------------------------------------ consensus_9110#0 CTGCCCTAGCTACTAGCAAGTCGATCTAGCTATATCGTGTGTGTGTACGTATATTGTGAT 715 consensus_9110#1 ------------------------------------------------------------ consensus_9110#2 ------------------------------------------------------------ consensus_9110#0 CGATGTACGAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGTGTTTGTGTGTC 775 consensus_9110#1 ------------------------------------------------------------ consensus_9110#2 ------------------------------------------------------------ consensus_9110#0 TCCGTACGCTACGTTTCTGTGTGTCTGTAGCCATGCATTGTCCTCTTCAAGGCTCCAATG 835 consensus_9110#1 ------------------------------------------------------------ consensus_9110#2 ------------------------------------------------------------ consensus_9110#0 TTATATAACAATAAGTGGTTGATTTCTACTGATGAAAGC 874 consensus_9110#1 --------------------------------------- consensus_9110#2 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||