cluster # 9110

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Oryza sativa
cluster # 9110 cluster # 9110 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9110#0 length = 874 sequences # 3

consensus_9110#1 length = 537 sequences # 1
consensus_9110#2 length = 131 sequences # 2

consensusID : consensus_9110#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 874
fasta sequence

                              [GCACAAGCTCGTGCCGAATTCCGCACGAGATCGCTAGCTTATCTCAATCTCGCCACGAGGAAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTTAGCTTAGAGCACGTACGTACGCATCGATGGCGCAGCAGGCGGAGAAGGCGGCGGAGCTGCAGGACCCGGAGATCCGGGCGGAGCTGGACCGGCGCGCCCGCGACGACGGCAAGACCGTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGGCGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGACACCGGCGCCGTGCTCATCGAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATATAGTAGTGTACTAGTGTGTGCATTTCCTTGGTGTATCCATGTGCATGCATGCATGGCAGGCGTACGTATTAGTATTACTCTACGTGACGTGTAAGCTATGCTGGCTACAAAATTTTGGTCCCTGCAGGATTATATTGTAGCCATATGTATGTTAGTATGTATGTACGTGTTCTTCACGTACTGCCCTAGCTACTAGCAAGTCGATCTAGCTATATCGTGTGTGTGTACGTATATTGTGATCGATGTACGAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGTGTTTGTGTGTCTCCGTACGCTACGTTTCTGTGTGTCTGTAGCCATGCATTGTCCTCTTCAAGGCTCCAATGTTATATAACAATAAGTGGTTGATTTCTACTGATGAAAGC]

[+] EMBL AA752874             [GCACAAGCTCGTGCCGAATTCCGCACGAGATCGCTAGCTTATCTCAATCTCGCCACGAGGAAATAAAGCCTAGCGCATATTANCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTTAGCTTAGAGCACGTNCGTNCGCATCGATGGCGCAGCA GCGGAGAAGGCGGCGGAGCTGCNGGA CCGGAGATCCGGGCGGAGCTGGACCGGCGCGCCCGCGACGACGGCAAGACCGTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCNACGCCCAGGANCGCCTCNCCGAANGGCNTNNGAAGGGAGGGCTGANCCGCACGACGGANTCCGGCAAGGANCGCGCCGACNACAACACCGGCGCCGTGCTCATCNAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCCGCAAGTGAGACCTACGTNCACTAACGTGCTGGTGTGTTGTGGTTGCTCCATCATATANTANTGTACTAATGTGTGCATTTCCTTGGTGTTTCCATGTNCATGCATGCATGGCA                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK122153             [                       cgatccATCGCTAGCTTATCTCAATCTCGCCACGAGGAAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTTAGCTTAGAGCACGTACGTACGCATCGATGGCGCAGCAGGCGGAGAAGGCGGCGGAGCTGCAGGACCCGGAGATCCGGGCGGAGCTGGACCGGCGCGCCCGCGACGACGGCAAGACCGTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGGCGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGACACCGGCGCCGTGCTCATCGAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATATAGTAGTGTACTAGTGTGTGCATTTCCTTGGTGTATCCATGTGCATGCATGCATGGCAGGCGTACGTATTAGTATTACTCTACGTGACGTGTAAGCTATGCTGGCTACAAAATTTTGGTCCCTGCAGGATTATATTGTAGCCATATGTATGTTAGTATGTATGTACGTGTTCTTCACGTACTGCCCTAGCTACTAGCAAGTCGATCTAGCTATATCGTGTGTGTGTACGTATATTGTGATCGATGTACGAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGTGTTTGTGTGTCTCCGTACGCTACGTTTCTGTGTGTCTGTAGCCATGCATTGTCCTCTTCAAGGCTCCAATGTTATATAACAATAAGTGGTTG                  ]
[+] EMBL AK064055             [                              TCGCTAGCTTATCTCAATCTCGCCACGAGGAAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTTAGCTTAGAGCACGTACGTACGCATCGATGGCGCAGCAGGCGGAGAAGGCGGCGGAGCTGCAGGACCCGGAGATCCGGGCGGAGCTGGACCGGCGCGCCCGCGACGACGGCAAGACCGTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGGCGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGACACCGGCGCCGTGCTCATCGAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATATAGTAGTGTACTAGTGTGTGCATTTCCTTGGTGTATCCATGTGCATGCATGCATGGCAGGCGTACGTATTAGTATTACTCTACGTGACGTGTAAGCTATGCTGGCTACAAAATTTTGGTCCCTGCAGGATTATATTGTAGCCATATGTATGTTAGTATGTATGTACGTGTTCTTCACGTACTGCCCTAGCTACTAGCAAGTCGATCTAGCTATATCGTGTGTGTGTACGTATATTGTGATCGATGTACGAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGTGTTTGTGTGTCTCCGTACGCTACGTTTCTGTGTGTCTGTAGCCATGCATTGTCCTCTTCAAGGCTCCAATGTTATATAACAATAAGTGGTTGATTTCTACTGATGAAAGC]




>consensus_9110#0
GCACAAGCTCGTGCCGAATTCCGCACGAGATCGCTAGCTTATCTCAATCTCGCCACGAGG
AAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTT
AGCTTAGAGCACGTACGTACGCATCGATGGCGCAGCAGGCGGAGAAGGCGGCGGAGCTGC
AGGACCCGGAGATCCGGGCGGAGCTGGACCGGCGCGCCCGCGACGACGGCAAGACCGTCA
TCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGGCGTA
AGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGACACCG
GCGCCGTGCTCATCGAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCC
GCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATATAGTA
GTGTACTAGTGTGTGCATTTCCTTGGTGTATCCATGTGCATGCATGCATGGCAGGCGTAC
GTATTAGTATTACTCTACGTGACGTGTAAGCTATGCTGGCTACAAAATTTTGGTCCCTGC
AGGATTATATTGTAGCCATATGTATGTTAGTATGTATGTACGTGTTCTTCACGTACTGCC
CTAGCTACTAGCAAGTCGATCTAGCTATATCGTGTGTGTGTACGTATATTGTGATCGATG
TACGAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGTGTTTGTGTGTCTCCGT
ACGCTACGTTTCTGTGTGTCTGTAGCCATGCATTGTCCTCTTCAAGGCTCCAATGTTATA
TAACAATAAGTGGTTGATTTCTACTGATGAAAGC

consensusID : consensus_9110#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [CGAGCTCGTCCAATNTNGGGCASNKKTAATTCTCAATCTCGCCACGAGGAAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTTAGCTTAGAGCACGTACGTACGCATCGATGGCGCASAGGCGGAGAAGGCGGCGGASTGCAGGACCCGGAGATCCGGGCGGAGCTGGACCSGCGCGCCCGCGACGACGGCAAGACCGTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGCGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGACACCGGCGCCGTGCTCATCTAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATATAGTAGTGTACTAGTGTGTRCATTTCCTTGGGTGTATCCATGTGCATRCATRCATGGCAGGCGTACGTATTAGTAT]

[+] EMBL AA754296             [CGAGCTCGTCCAATNTNGGGCASNKKTAATTCTCAATCTCGCCACGAGGAAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTTAGCTTAGAGCACGTACGTACGCATCGATGGCGCASAGGCGGAGAAGGCGGCGGASTGCAGGACCCGGAGATCCGGGCGGAGCTGGACCSGCGCGCCCGCGACGACGGCAAGACCGTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGCGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGACACCGGCGCCGTGCTCATCTAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATATAGTAGTGTACTAGTGTGTRCATTTCCTTGGGTGTATCCATGTGCATRCATRCATGGCAGGCGTACGTATTAGTAT]




>consensus_9110#1
CGAGCTCGTCCAATNTNGGGCASNKKTAATTCTCAATCTCGCCACGAGGAAATAAAGCCT
AGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTTAGCTTAGAGCA
CGTACGTACGCATCGATGGCGCASAGGCGGAGAAGGCGGCGGASTGCAGGACCCGGAGAT
CCGGGCGGAGCTGGACCSGCGCGCCCGCGACGACGGCAAGACCGTCATCAAGAGCGGCAC
CGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGCGTAAGAAGGGAGGGCTG
AGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGACACCGGCGCCGTGCTCATC
TAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTGGGCCGCAAGTGAGACGTA
CGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATATAGTAGTGTACTAGTGTGT
RCATTTCCTTGGGTGTATCCATGTGCATRCATRCATGGCAGGCGTACGTATTAGTAT

consensusID : consensus_9110#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 131
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTGGGATCGATGTACAAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGGGTTTGGGGGTCTCCGTACGCTACGTTTCTACTCCTCAGTCCATG]

[+] EMBL CF320435             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTGGGATCGATGTACAAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGGGTTTGGGGGTCTCCGTACGCTACGTTTCTACTCCTCAGTCCAT ]
[-] EMBL CF320436             [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTGTGATCGATGTACGAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGTGTTTGTGTGTCTCCGTACGCTACGTTTCTACTCCTCAGTCCATG]




>consensus_9110#2
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTGGGATCGATGTACAAAGCTGCTGCTTT
CTACATCCTGGCTACAAATGTAATTGGGTTTGGGGGTCTCCGTACGCTACGTTTCTACTC
CTCAGTCCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9110#0      GCACAAGCTCGTGCCGAATTCCGCACGAGATCGCTAGCTTATCTCAATCTCGCCACGAGG 60
consensus_9110#1      ---CGAGCTCGTCCAATNTNGGGCASN-----KKTAATT---CTCAATCTCGCCACGAGG 49
consensus_9110#2      --------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTT 28
                                                        *   *    *   * *          

consensus_9110#0      AAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTT 120
consensus_9110#1      AAATAAAGCCTAGCGCATATTAGCCGTTGGTTGGTTTAGTATACGTACGTAGGGTAGCTT 109
consensus_9110#2      TTATTGGGATCGATGTACAA-AGCTGCTGCTTTCTACATCCTGGCTACA-AATGTAATTG 86
                        **   *      * * *  *** * ** **  *  *   *   ***  *  ***  * 

consensus_9110#0      AGCTTAGAG---CACGTACG-TACGCATCGATGGCGCAGCAGGCGGAGAAGGCGGCGGAG 176
consensus_9110#1      AGCTTAGAG---CACGTACG-TACGCATCGATGGCGCAS-AGGCGGAGAAGGCGGCGGAS 164
consensus_9110#2      GGTTTGGGGGTCTCCGTACGCTACGTTTCTACTCCTCAGTCCATG--------------- 131
                       * ** * *     ****** ****  ** *   * **      *               

consensus_9110#0      CTGCAGGACCCGGAGATCCGGGCGGAGCTGGACCGGCGCGCCCGCGACGACGGCAAGACC 236
consensus_9110#1      -TGCAGGACCCGGAGATCCGGGCGGAGCTGGACCSGCGCGCCCGCGACGACGGCAAGACC 223
consensus_9110#2      ------------------------------------------------------------
                                                                                  

consensus_9110#0      GTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGGG 296
consensus_9110#1      GTCATCAAGAGCGGCACCGGCGGCAAGAGCCTCGACGCCCAGGAGCGCCTCGCCGAAGG- 282
consensus_9110#2      ------------------------------------------------------------
                                                                                  

consensus_9110#0      CGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGAC 356
consensus_9110#1      CGTAAGAAGGGAGGGCTGAGCCGCACGACGGAGTCCGGCAAGGAGCGCGCCGACGACGAC 342
consensus_9110#2      ------------------------------------------------------------
                                                                                  

consensus_9110#0      ACCGGCGCCGTGCTCATCGAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTG 416
consensus_9110#1      ACCGGCGCCGTGCTCATCTAGCCCGACGACAAGATGCTCAAGGAGGCCAAAAAGAACCTG 402
consensus_9110#2      ------------------------------------------------------------
                                                                                  

consensus_9110#0      GGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATAT 476
consensus_9110#1      GGCCGCAAGTGAGACGTACGTGCACTAGCGTGCTGGTGTGTTGTGGTTGCTCGATCATAT 462
consensus_9110#2      ------------------------------------------------------------
                                                                                  

consensus_9110#0      AGTAGTGTACTAGTGTGTGCATTTCCTTGG-TGTATCCATGTGCATGCATGCATGGCAGG 535
consensus_9110#1      AGTAGTGTACTAGTGTGTRCATTTCCTTGGGTGTATCCATGTGCATRCATRCATGGCAGG 522
consensus_9110#2      ------------------------------------------------------------
                                                                                  

consensus_9110#0      CGTACGTATTAGTATTACTCTACGTGACGTGTAAGCTATGCTGGCTACAAAATTTTGGTC 595
consensus_9110#1      CGTACGTATTAGTAT--------------------------------------------- 537
consensus_9110#2      ------------------------------------------------------------
                                                                                  

consensus_9110#0      CCTGCAGGATTATATTGTAGCCATATGTATGTTAGTATGTATGTACGTGTTCTTCACGTA 655
consensus_9110#1      ------------------------------------------------------------
consensus_9110#2      ------------------------------------------------------------
                                                                                  

consensus_9110#0      CTGCCCTAGCTACTAGCAAGTCGATCTAGCTATATCGTGTGTGTGTACGTATATTGTGAT 715
consensus_9110#1      ------------------------------------------------------------
consensus_9110#2      ------------------------------------------------------------
                                                                                  

consensus_9110#0      CGATGTACGAAGCTGCTGCTTTCTACATCCTGGCTACAAATGTAATTGTGTTTGTGTGTC 775
consensus_9110#1      ------------------------------------------------------------
consensus_9110#2      ------------------------------------------------------------
                                                                                  

consensus_9110#0      TCCGTACGCTACGTTTCTGTGTGTCTGTAGCCATGCATTGTCCTCTTCAAGGCTCCAATG 835
consensus_9110#1      ------------------------------------------------------------
consensus_9110#2      ------------------------------------------------------------
                                                                                  

consensus_9110#0      TTATATAACAATAAGTGGTTGATTTCTACTGATGAAAGC 874
consensus_9110#1      ---------------------------------------
consensus_9110#2      ---------------------------------------