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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1246 fasta sequence
[CACGCGCCCACCCCACGCGCGTCACCGTCGCTCGCCCAAACTGCGGGCGCGTCGCACGCCGCCCTCCCATCGTTTTCTCCCATTCTTTCCCCCTCCTCCTCGTGCAACCACCCAACCACTGCAGCCAGCCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGCGCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGATGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGGTCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAATCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGATTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGTTTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACCGTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTGTGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGTGACATTCAGAAAAGTTTGAAATGCTTTGATTATTCTGTAAAAAAAA]
[+] EMBL AK070963 [CACGCGCCCACCCCACGCGCGTCACCGTCGCTCGCCCAAACTGCGGGCGCGTCGCACGCCGCCCTCCCATCGTTTTCTCCCATTCTTTCCCCCTCCTCCTCGTGCAACCACCCAACCACTGCAGCCAGCCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGCGCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGATGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGGTCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAATCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGATTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGTTTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACCGTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTGTGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATA ]
[+] EMBL AK059560 [ TCCCATTCTTTCCCCCTCCTCCTCGTGCAACCACCCAACCACTGCAGCCAGCCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGCGCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGATGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGGTCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAATCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGACTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGTTTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACCGTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTGTGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGTGACATTCA ]
[+] EMBL AY222337 [ CCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGCGCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGATGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGGTCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAATCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATTACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGAAGCTACCGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGATTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGTTTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACCGTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTGTGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGTGACATTCAGAAAAGTTTGAAATGCTTTGATTATTCTGTAAAAAAAA]
[+] EMBL CF278761 [ tTCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAG ]
[+] EMBL C74688 [ ACCANTCACCANNANGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAGNAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGNNCACGGGATTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGNCA ]
consensusID : consensus_9111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence
[GGATTTTTTCCCATGTAACCCGGCCTCAGCCAAGGGACCCCACCCCCACGGCCCCTTTGCCAGTAAACCTGTTTCCAGGGTTTTCCGGAAGACAAGATCCCCAATGTAGCCGGGGGGTTTTTGGCCCTAACAAGGAAACCCGTAAAGGTAGATTTTAGGGCCCCCCCAAAACGAAAGGGCCCCCCAAATATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATTTTAAACAAAAATTTGGGGCTGGGTTTATGGGGAGCCCCCAATTTGGAAATTTGAATTTCCGTTTTAAGGGGGCAAAAAGGGGCCCTTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF278760 [GGATTTTTTCCCATGTAACCCGGCCTCAGCCAAGGGACCCCACCCCCACGGCCCCTTTGCCAGTAAACCTGTTTCCAGGGTTTTCCGGAAGACAAGATCCCCAATGTAGCCGGGGGGTTTTTGGCCCTAACAAGGAAACCCGTAAAGGTAGATTTTAGGGCCCCCCCAAAACGAAAGGGCCCCCCAAATATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATTTTAAACAAAAATTTGGGGCTGGGTTTATGGGGAGCCCCCAATTTGGAAATTTGAATTTCCGTTTTAAGGGGGCAAAAAGGGGCCCTTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9111#0 CACGCGCCCACCCCACGCGCGTCACCGTCGCTCGCCCAAACTGCGGGCGCGTCGCACGCC 60
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 GCCCTCCCATCGTTTTCTCCCATTCTTTCCCCCTCCTCCTCGTGCAACCACCCAACCACT 120
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 GCAGCCAGCCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGC 180
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 GCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGA 240
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 TGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGG 300
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 TCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAAT 360
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 CAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACT 420
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 TGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAA 480
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 TACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGA 540
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 ATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTC 600
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 GTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTT 660
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 GGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCC 720
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 CAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTAC 780
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 CGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGT 840
consensus_9111#1 ------------------------------------------------------------
consensus_9111#0 CTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGATTTCTGACCATGTAACAC 900
consensus_9111#1 ---------------------------------------GGATTTTTTCCCATGTAACCC 21
****** * ********* *
consensus_9111#0 GGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGT 960
consensus_9111#1 GGCCTCAGCCAAGGGACCCCACCCCCACGGCCCCTTTGCCAGTAAACCTGTTTCCAGGGT 81
************** **** ** ** ****** ************************ **
consensus_9111#0 TTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACC 1020
consensus_9111#1 TTTCCGGAAGACAAGATCCCCAATGTAGCCGGGGGGTTTTTGGCCCTAACAAGGAAACCC 141
** * ************* ********* * ** ** **** ***** ***** **
consensus_9111#0 GTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTC 1080
consensus_9111#1 GTAAAGGTAGATTTTAGGGCCCCCCCAAAACGAAAGGGCCCCCCAAATATTTGAGAATTC 201
*** ******** ***** * * ** ***** *** ** * *** ************
consensus_9111#0 CTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTG 1140
consensus_9111#1 CTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATTTTAAACAAAAATTTGGGGCTG 261
************************************** * ***** * ** ** * ***
consensus_9111#0 TGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGT 1200
consensus_9111#1 GGTTTATGGGGAGCCCCCAATTTGGAAATTTGAATTTCCGTTTTAAGGGGGCAAAAAGGG 321
* * ***** *** ** *** ** * ** ***** ** ******** ** **** ***
consensus_9111#0 GACATTCAGAAAAGTTTGAAATGCTTTGATTATTCTGTAAAAAAAA-------------- 1246
consensus_9111#1 GCCCTTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 381
* * *** ***** *** * * ********
consensus_9111#0 --------
consensus_9111#1 AAAAAAAA 389
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||