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Oryza sativa
cluster # 9140 cluster # 9140       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9140#0 length = 2178 sequences # 4  
consensus_9140#1 length = 687 sequences # 1  
consensus_9140#2 length = 279 sequences # 1  

consensusID : consensus_9140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2178
fasta sequence
                              [CTAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCAAGCCAAGGCCACCATGGACAGCACAAGCAACAAGATGAAGAAGATGGAGCCGACGAGCGGCGGCCGCCACGGGACTCCGGGGCAGGTGGTGGGCCTGTGCGCTGCCCTCGTCACCGCCATGGCTGCCTCACTGCTCTGCTCCACCTCCATGGCCCTCACCCCGGACGGGCAGGCATTGCTGGAGCTCAAGCTCTCCTTCAATGGCAGCAGCCAGCGGCTGACGACCTGGAAGCCCACCGACCCTAACCCCTGCGGCTGGGAGGGCATCTCCTGCTCCTTCCCCGACCTCAGGGTCCAATCCATAAATCTCCCTTACATGCAGCTTGGGGGCATCATTTCACCTAACATTGGGAAGCTCGACAAGCTGCAGAGAATAGCATTGCACCAGAACAGCTTGCATGGCCCAATCCCTTCTGAGATCAAGAACTGCACCGAGCTCAGAGCGATTTACTTGAGAGCCAACTACCTACAAGGAGGCATCCCTTCAGAGATTGGCGAGCTCATTCACCTCACAATCTTGGACTTGTCCAGCAACCTGTTGAGGGGCACAATACCGGCGTCCATTGGAAGCCTTACTCACCTTCGTTTCCTGAATCTGTCCACCAATTTCTTTTCTGGAGAAATCCCAAATGTTGGTGTCCTTGGAACCTTCAAAAGCAGCTCGTTCGTTGGGAATTTGGAGCTTTGTGGACTGCCCATCCAGAAGGCTTGCCGTGGAACCCTCGGGTTTCCTGCCGTGTTGCCGCATTCTGATCCCCTCTCCTCAGCTGGCGTTTCACCAATCAACAACAACAAAACATCGCACTTCCTGAATGGCATTGTGATTGGCTCAATGTCAACCATGGCTCTTGCATTGATCGCGGTACTAGGCTTCCTCTGGATATGTCTTCTGTCCAGGAAGAAGAGCATTGGTGGAAGCTATGTTAAAATGGACAAGCAAACTATCCCAGATGGTGCGAAGCTCGTGACATACCAGTGGAACCTTCCGTACTCATCAGGTGAGATCATCAG-AAGGTTGGAGCTGCTTGATGAAGAGGATGTGGTCGGTTGTGGCGGTTTTGGTA-CCGTGTACAAGATGGTGATGGATGATGGCACGGCA-TTTGCTGTCAAGAGGATTGATCTCAACCGTGAA-GGGCGCGATAGGACCTTCGAGAAGGAGCTTGAG-ATTCTGGGCAGCATT-AGGCACATTAACCTTGTCAATCTGCGAGGATACTGCCGTCTTCCTACAGCCAAACTACTCATATATGATTTCTTGGAGCTGGGCAGTTTGGATTGCTACCTTCATGGAGATGCTCAGGATGATCAACCATTGAACTGGAATGCACGTATGAAGATTGCCCTGGGCTCTGCTCGAGGGCTGGCGTATTTGCACCACGATTGCTCACCCGTGATTGTGCACAGGGACATCAAAGCCAGTAACATCCTTCTGGACAGAAGCTTGGAACCCCGCGTATCAGATTTTGGCCTTGCAAGGCTGCTTGTAGATAATGATGCCCACGTTACCACTGTTGTCGCGGGTACTTTTGGATACCTAGCACCAGAATACCTGCAAAATGGCCATGCTACTGAAAAATCTGATGTGTATAGCTTTGGAGTGCTTTTGCTCGAGTTGGTGACCGGAAAGAGGCCTACAGATGCATGCTTCCTCAAGAAGGGACTGAACATTGTTGGCTGGCTCAACACCCTGACGGGGGAGCATCGGCTGGAGGAGATCATTGATGAGAACTGCGGTGATGTGGAAGTGGAAGCAGTCGAGGCGATCCTCGACATTGCTGCGATGTGCACCGATGCAGACCCAGGCCAGCGTCCATCGATGAGCGCTGTCCTGAAGATGCTGGAGGAGGAGATCCTGTCTCCCTGCATGAGTGAGCTCTACTACGAGCAGCACCTGGAACTCTGAGTGAGTACCTCCTATAATGGTTGCTACTACTCATGATTGCAGTGACAAGCAACAAATTTTGTAGATACATGATGATGAACCGTGTAGGAGTGTAGCTGGACAAGTGCAGCTTCACATCTTCTTCTTTTGTGCCCAGCTGGTTCTTTGGGCAGAACCAAATCACTGTGGTGGTCTGTACATAGTGGAGACCTTCTGTTCATCTTTTTTTTTCTCATTTATCTGTCTGGCTGCTGCAAATCCACTT]

[+] EMBL AK103026             [CTAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCAAGCCAAGGCCACCATGGACAGCACAAGCAACAAGATGAAGAAGATGGAGCCGACGAGCGGCGGCCGCCACGGGACTCCGGGGCAGGTGGTGGGCCTGTGCGCTGCCCTCGTCACCGCCATGGCTGCCTCACTGCTCTGCTCCACCTCCATGGCCCTCACCCCGGACGGGCAGGCATTGCTGGAGCTCAAGCTCTCCTTCAATGGCAGCAGCCAGCGGCTGACGACCTGGAAGCCCACCGACCCTAACCCCTGCGGCTGGGAGGGCATCTCCTGCTCCTTCCCCGACCTCAGGGTCCAATCCATAAATCTCCCTTACATGCAGCTTGGGGGCATCATTTCACCTAACATTGGGAAGCTCGACAAGCTGCAGAGAATAGCATTGCACCAGAACAGCTTGCATGGCCCAATCCCTTCTGAGATCAAGAACTGCACCGAGCTCAGAGCGATTTACTTGAGAGCCAACTACCTACAAGGAGGCATCCCTTCAGAGATTGGCGAGCTCATTCACCTCACAATCTTGGACTTGTCCAGCAACCTGTTGAGGGGCACAATACCGGCGTCCATTGGAAGCCTTACTCACCTTCGTTTCCTGAATCTGTCCACCAATTTCTTTTCTGGAGAAATCCCAAATGTTGGTGTCCTTGGAACCTTCAAAAGCAGCTCGTTCGTTGGGAATTTGGAGCTTTGTGGACTGCCCATCCAGAAGGCTTGCCGTGGAACCCTCGGGTTTCCTGCCGTGTTGCCGCATTCTGATCCCCTCTCCTCAGCTGGCGTTTCACCAATCAACAACAACAAAACATCGCACTTCCTGAATGGCATTGTGATTGGCTCAATGTCAACCATGGCTCTTGCATTGATCGCGGTACTAGGCTTCCTCTGGATATGTCTTCTGTCCAGGAAGAAGAGCATTGGTGGAAGCTATGTTAAAATGGACAAGCAAACTATCCCAGATGGTGCGAAGCTCGTGACATACCAGTGGAACCTTCCGTACTCATCAGGTGAGATCATCAG GAGGTTGGAGCTGCTTGATGAAGAGGATGTGGTCGGTTGTGGCGGTTTTGGTA CCGTGTACAAGATGGTGATGGATGATGGCACGGCA TTTGCTGTCAAGAGGATTGATCTCAACCGTGAA GGGCGCGATAGGACCTTCGAGAAGGAGCTTGAG ATTCTGGGCAGCATT AGGCACATTAACCTTGTCAATCTGCGAGGATACTGCCGTCTTCCTACAGCCAAACTACTCATATATGATTTCTTGGAGCTGGGCAGTTTGGATTGCTACCTTCATGGAGATGCTCAGGATGATCAACCATTGAACTGGAATGCACGTATGAAGATTGCCCTGGGCTCTGCTCGAGGGCTGGCGTATTTGCACCACGATTGCTCACCCGTGATTGTGCACAGGGACATCAAAGCCAGTAACATCCTTCTGGACAGAAGCTTGGAACCCCGCGTATCAGATTTTGGCCTTGCAAGGCTGCTTGTAGATAATGATGCCCACGTTACCACTGTTGTCGCGGGTACTTTTGGATACCTAGCACCAGAATACCTGCAAAATGGCCATGCTACTGAAAAATCTGATGTGTATAGCTTTGGAGTGCTTTTGCTCGAGTTGGTGACCGGAAAGAGGCCTACAGATGCATGCTTCCTCAAGAAGGGACTGAACATTGTTGGCTGGCTCAACACCCTGACGGGGGAGCATCGGCTGGAGGAGATCATTGATGAGAACTGCGGTGATGTGGAAGTGGAAGCAGTCGAGGCGATCCTCGACATTGCTGCGATGTGCACCGATGCAGACCCAGGCCAGCGTCCATCGATGAGCGCTGTCCTGAAGATGCTGGAGGAGGAGATCCTGTCTCCCTGCATGAGTGAGCTCTACTACGAGCAGCACCTGGAACTCTGAGTGAGTACCTCCTATAATGGTTGCTACTACTCATGATTGCAGTGACAAGCAACAAATTTTGTAGATACATGATGATGAACCGTGTAGGAGTGTAGCTGGACAAGTGCAGCTTCACATCTTCTTCTTTTGTGCCCAGCTGGTTCTTTGGGCAGAACCAAATCACTGTGGTGGTCTGTACATAGTGGAGACCTTCTGTTCATCTTTTTTTTTCTCATTTATCTGTCTGGCTGCTGCAAATCCACTT]
[+] EMBL CF323387             [                                                                                                                                                                                                                                                                                                                                                                                                GGAAGCTCGACAAGCTGCAGAGAATAGCATTGCACCAGAACAGCTTGCATGGCCCAATCCCTTCTGAGATCAAGAACTGCACCGAGCTCAGAGCGATTTACTTGAGAGCCAACTACCTACAAGGAGGCATCCCTTCAGAGATTGGCGAGCTCATTCACCTCACAATCTTGGACTTGTCCAGCAACCTGTTGAGGGGCACAATACCGGCGTCCATTGGAAGCCTTACTCACCTTCGTTTCCTGAATCTGTCCACCAATTTCTTTTCTGGAGAAATCCCAAATGTTGGTGTCCTTGGAACCTTCAAAAGCAGCTCGTTCGTTGGGAATTTGGAGCTTTGTGGACTGCCCATCCAGAAGGCTTGCCGTGGAACCCTCGGGTTTCCTGCCGTGTTGCCGCATTCTGATCCCCTCTCCTCAGCTGGCGTTTCACCAATCAACAACAACAAAACATCGCACTTCCTGAATGGCATTGTGATTGGCTCAATGTCAACCATGGCTCTTGCATTGATCGCGGTACTAGGCTTCCTCTGGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB097120             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCAGAGATTGGCGAGCTCATTCACCTCACAATCTTGGACTTGTCCAGCAACCTGTTGAGGGGCACAATACCGGCGTCCATTGGAAGCCTTACTCACCTTCGTTTCCTGAATCTGTCCACCAATTTCTTTTCTGGAGAAATCCCAAATGTTGGTGTCCTTGGAACCTTCAAAAGCAGCTCGTTCGTTGGGAATTTGGAGCCTTGTGGACTGCCCATCCAGAAGGCTTGCCGTGGAACCCTCGGGTTTCCTGCCGTGTTGCCGCATTCTGATCCCCTCTCCTCAGCTGGCGTTTCACCAATCAACAACAACAAAACATCGCACTTCCTGAATGGCATTGTGATTGGCTCAATGTCAACCATGGCTCTTGCATTGATCGCGGTACTAGGCTTCCTCTGGATATGTCTTCTGTCCAGGAAGAAGAGCATTGGTGGAAGCTATGTTAAAATGGACAAGCAAACTATCCCAGATGGTGCGAAGCTCGTGACATACCAGTGGAACCTTCCGTACTCATCAGGTGAGATCATCAGAAAGGTTGGAGCTGCTTGATGAAGAGGATGTGGTCGGTTGTGGCGGTTTTGGTACCCGNGTACAAGATGGTGATGGATGATGGCACGGCATTTTGCTGGCAAGAGGATTGATCTCAACCGGGAANGGGCGCGATAGGACCTTCGAGAAGGAGCTTGGGAATTTTGGGCAGCATTAAGGCACATTAANCNTGGCAATCTGNGAGGATACTGGCGNCTTTCTACAGGCCAACTACTCATATATGATTTCTTGGAACTGGGCAGTTn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK059245             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACTGCCCATCCAGAAGGCTTGCCGTGGAACCCTCGGGTTTCCTGCCGTGTTGCCGCATTCTGATCCCCTCTCCTCAGCTGGCGTTTCACCAATCAACAACAACAAAACATCGCACTTCCTGAATGGCATTGTGATTGGCTCAATGTCAACCATGGCTCTTGCATTGATCGCGGTACTAGGCTTCCTCTGGATATGTCTTCTGTCCAGGAAGAAGAGCATTGGTGGAAGCTATGTTAAAATGGACAAGCAAACTATCCCAGATGGTGCGAAGCTCGTGACATACCAGTGGAACCTTCCGTACTCATCAGGTGAGATCATCAG AAGGTTGGAGCTGCTTGATGAAGAGGATGTGGTCGGTTGTGGCGGTTTTGGTA CCGTGTACAAGATGGTGATGGATGATGGCACGGCA TTTGCTGTCAAGAGGATTGATCTCAACCGTGAA GGGCGCGATAGGACCTTCGAGAAGGAGCTTGAG ATTCTGGGCAGCATT AGGCACATTAACCTTGTCAATCTGCGAGGATACTGCCGTCTTCCTACAGCCAAACTACTCATATATGATTTCTTGGAGCTGGGCAGTTTGGATTGCTACCTTCATGGAGATGCTCAGGATGATCAACCATTGAACTGGAATGCACGTATGAAGATTGCCCTGGGCTCTGCTCGAGGGCTGGCGTATTTGCACCACGATTGCTCACCCGTGATTGTGCACAGGGACATCAAAGCCAGTAACATCCTTCTGGACAGAAGCTTGGAACCCCGCGTATCAGATTTTGGCCTTGCAAGGCTGCTTGTAGATAATGATGCCCACGTTACCACTGTTGTCGCGGGTACTTTTGGATACCTAGCACCAGAATACCTGCAAAATGGCCATGCTACTGAAAAATCTGATGTGTATAGCTTTGGAGTGCTTTTGCTCGAGTTGGTGACCGGAAAGAGGCCTACAGATGCATGCTTCCTCAAGAAGGGACTGAACATTGTTGGCTGGCTCAACACCCTGACGGGGGAGCATCGGCTGGAGGAGATCATTGATGAGAACTGCGGTGATGTGGAAGTGGAAGCAGTCGAGGCGATCCTCGACATTGCTGCGATGTGCACCGATGCAGACCCAGGCCAGCGTCCATCGATGAGCGCTGTCCTGAAGATGCTGGAGGAGGAGATCCTGTCTCCCTGCATGAGTGAGCTCTACTACGAGCAGCACCTGGAACTCTGAGTGAGTACCTCCTATAATGGTTGCTACTACTCATGATTGCAGTGACAAGCAACAAATTTTGTAGATACATGATGATGAACCGTGTAGGAGTGTAGCTGGACAA                                                                                                                                             ]


>consensus_9140#0 CTAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCAAGCCAAGGCCACCATGGACAGCACAA GCAACAAGATGAAGAAGATGGAGCCGACGAGCGGCGGCCGCCACGGGACTCCGGGGCAGG TGGTGGGCCTGTGCGCTGCCCTCGTCACCGCCATGGCTGCCTCACTGCTCTGCTCCACCT CCATGGCCCTCACCCCGGACGGGCAGGCATTGCTGGAGCTCAAGCTCTCCTTCAATGGCA GCAGCCAGCGGCTGACGACCTGGAAGCCCACCGACCCTAACCCCTGCGGCTGGGAGGGCA TCTCCTGCTCCTTCCCCGACCTCAGGGTCCAATCCATAAATCTCCCTTACATGCAGCTTG GGGGCATCATTTCACCTAACATTGGGAAGCTCGACAAGCTGCAGAGAATAGCATTGCACC AGAACAGCTTGCATGGCCCAATCCCTTCTGAGATCAAGAACTGCACCGAGCTCAGAGCGA TTTACTTGAGAGCCAACTACCTACAAGGAGGCATCCCTTCAGAGATTGGCGAGCTCATTC ACCTCACAATCTTGGACTTGTCCAGCAACCTGTTGAGGGGCACAATACCGGCGTCCATTG GAAGCCTTACTCACCTTCGTTTCCTGAATCTGTCCACCAATTTCTTTTCTGGAGAAATCC CAAATGTTGGTGTCCTTGGAACCTTCAAAAGCAGCTCGTTCGTTGGGAATTTGGAGCTTT GTGGACTGCCCATCCAGAAGGCTTGCCGTGGAACCCTCGGGTTTCCTGCCGTGTTGCCGC ATTCTGATCCCCTCTCCTCAGCTGGCGTTTCACCAATCAACAACAACAAAACATCGCACT TCCTGAATGGCATTGTGATTGGCTCAATGTCAACCATGGCTCTTGCATTGATCGCGGTAC TAGGCTTCCTCTGGATATGTCTTCTGTCCAGGAAGAAGAGCATTGGTGGAAGCTATGTTA AAATGGACAAGCAAACTATCCCAGATGGTGCGAAGCTCGTGACATACCAGTGGAACCTTC CGTACTCATCAGGTGAGATCATCAGAAGGTTGGAGCTGCTTGATGAAGAGGATGTGGTCG GTTGTGGCGGTTTTGGTACCGTGTACAAGATGGTGATGGATGATGGCACGGCATTTGCTG TCAAGAGGATTGATCTCAACCGTGAAGGGCGCGATAGGACCTTCGAGAAGGAGCTTGAGA TTCTGGGCAGCATTAGGCACATTAACCTTGTCAATCTGCGAGGATACTGCCGTCTTCCTA CAGCCAAACTACTCATATATGATTTCTTGGAGCTGGGCAGTTTGGATTGCTACCTTCATG GAGATGCTCAGGATGATCAACCATTGAACTGGAATGCACGTATGAAGATTGCCCTGGGCT CTGCTCGAGGGCTGGCGTATTTGCACCACGATTGCTCACCCGTGATTGTGCACAGGGACA TCAAAGCCAGTAACATCCTTCTGGACAGAAGCTTGGAACCCCGCGTATCAGATTTTGGCC TTGCAAGGCTGCTTGTAGATAATGATGCCCACGTTACCACTGTTGTCGCGGGTACTTTTG GATACCTAGCACCAGAATACCTGCAAAATGGCCATGCTACTGAAAAATCTGATGTGTATA GCTTTGGAGTGCTTTTGCTCGAGTTGGTGACCGGAAAGAGGCCTACAGATGCATGCTTCC TCAAGAAGGGACTGAACATTGTTGGCTGGCTCAACACCCTGACGGGGGAGCATCGGCTGG AGGAGATCATTGATGAGAACTGCGGTGATGTGGAAGTGGAAGCAGTCGAGGCGATCCTCG ACATTGCTGCGATGTGCACCGATGCAGACCCAGGCCAGCGTCCATCGATGAGCGCTGTCC TGAAGATGCTGGAGGAGGAGATCCTGTCTCCCTGCATGAGTGAGCTCTACTACGAGCAGC ACCTGGAACTCTGAGTGAGTACCTCCTATAATGGTTGCTACTACTCATGATTGCAGTGAC AAGCAACAAATTTTGTAGATACATGATGATGAACCGTGTAGGAGTGTAGCTGGACAAGTG CAGCTTCACATCTTCTTCTTTTGTGCCCAGCTGGTTCTTTGGGCAGAACCAAATCACTGT GGTGGTCTGTACATAGTGGAGACCTTCTGTTCATCTTTTTTTTTCTCATTTATCTGTCTG GCTGCTGCAAATCCACTT



consensusID : consensus_9140#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence
                              [TGGAACCCCGCGTATCAGATTTGGCCTTGCAAGGCTGCTNGTAGATAATGATGCCCACGTTACCACTGTTGTCGCGGGTACTTTNGGATACCTAGCACCAGAATACCTGCAAAATGGCCATGCTACTGAAAAATTTGATGTGTATAGCTTTGGAGTGCTTTTGCTCGAGTTGGTGACCGGAAAGAGGCCTACAGATGCATGCTTCCTCAAGAAGGGACTGAACATTGTTGGCTGGCTCAACACCCTGACGGGGGAGCATCGGCTGGAGGAGATCATTGATGAGAACTGCGGCGATGTGGAAGTGGAAGCAGTCGAGGCGATCCTCGACATTGTTGCGATGTGCACCGATGCAGACCCAGGCCAGCGTCCATCCATGAGCGCTGTCCTGAAGATGCTGGAGGAGGAGATCCTGTCCCCCTGCATGAGTGAGCTCTACTACGAGCAGCACCTGGAACTTTGAGTGAGTCCCTCCTATAATGGTTGCTACTACTCATGATTGCAGTGACAAGCACCAAATTTTGTAGATACTTGATGATGACCCGTGTAGGAGTGTAGCTGGACAAGTGCAGCTTCACATCTTCTTCTTTTGTGCCCACCTGGTTCTTTGGGCAGAACCAAATCACTGTGGTGGTCTGTACATAGTGGAGACCTTCTGTTCATCTTTTTTTTTCTAAAAAAAAAAAAAAA]

[-] EMBL CA763151             [TGGAACCCCGCGTATCAGATTTGGCCTTGCAAGGCTGCTNGTAGATAATGATGCCCACGTTACCACTGTTGTCGCGGGTACTTTNGGATACCTAGCACCAGAATACCTGCAAAATGGCCATGCTACTGAAAAATTTGATGTGTATAGCTTTGGAGTGCTTTTGCTCGAGTTGGTGACCGGAAAGAGGCCTACAGATGCATGCTTCCTCAAGAAGGGACTGAACATTGTTGGCTGGCTCAACACCCTGACGGGGGAGCATCGGCTGGAGGAGATCATTGATGAGAACTGCGGCGATGTGGAAGTGGAAGCAGTCGAGGCGATCCTCGACATTGTTGCGATGTGCACCGATGCAGACCCAGGCCAGCGTCCATCCATGAGCGCTGTCCTGAAGATGCTGGAGGAGGAGATCCTGTCCCCCTGCATGAGTGAGCTCTACTACGAGCAGCACCTGGAACTTTGAGTGAGTCCCTCCTATAATGGTTGCTACTACTCATGATTGCAGTGACAAGCACCAAATTTTGTAGATACTTGATGATGACCCGTGTAGGAGTGTAGCTGGACAAGTGCAGCTTCACATCTTCTTCTTTTGTGCCCACCTGGTTCTTTGGGCAGAACCAAATCACTGTGGTGGTCTGTACATAGTGGAGACCTTCTGTTCATCTTTTTTTTTCTAAAAAAAAAAAAAAA]


>consensus_9140#1 TGGAACCCCGCGTATCAGATTTGGCCTTGCAAGGCTGCTNGTAGATAATGATGCCCACGT TACCACTGTTGTCGCGGGTACTTTNGGATACCTAGCACCAGAATACCTGCAAAATGGCCA TGCTACTGAAAAATTTGATGTGTATAGCTTTGGAGTGCTTTTGCTCGAGTTGGTGACCGG AAAGAGGCCTACAGATGCATGCTTCCTCAAGAAGGGACTGAACATTGTTGGCTGGCTCAA CACCCTGACGGGGGAGCATCGGCTGGAGGAGATCATTGATGAGAACTGCGGCGATGTGGA AGTGGAAGCAGTCGAGGCGATCCTCGACATTGTTGCGATGTGCACCGATGCAGACCCAGG CCAGCGTCCATCCATGAGCGCTGTCCTGAAGATGCTGGAGGAGGAGATCCTGTCCCCCTG CATGAGTGAGCTCTACTACGAGCAGCACCTGGAACTTTGAGTGAGTCCCTCCTATAATGG TTGCTACTACTCATGATTGCAGTGACAAGCACCAAATTTTGTAGATACTTGATGATGACC CGTGTAGGAGTGTAGCTGGACAAGTGCAGCTTCACATCTTCTTCTTTTGTGCCCACCTGG TTCTTTGGGCAGAACCAAATCACTGTGGTGGTCTGTACATAGTGGAGACCTTCTGTTCAT CTTTTTTTTTCTAAAAAAAAAAAAAAA



consensusID : consensus_9140#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence
                              [GCCGCTGTGAGTACCTCCTATAATGGTTGCTACTACTCATGATTGCAGTGACAAGCAACAAATTTTGTAGAATACATGATGATGAACCGTGTAGGAGTGTAGCTGGACAAGTGCAGCTTCACATCTTCTTCTTTTGTGCCCAGCTGGTTCTTTGGGCAGAACCAAATCACTGTGGTGGTCTGTACATAGTGGAGACCTTCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGG]

[+] EMBL AU225358             [GCCGCTGTGAGTACCTCCTATAATGGTTGCTACTACTCATGATTGCAGTGACAAGCAACAAATTTTGTAGAATACATGATGATGAACCGTGTAGGAGTGTAGCTGGACAAGTGCAGCTTCACATCTTCTTCTTTTGTGCCCAGCTGGTTCTTTGGGCAGAACCAAATCACTGTGGTGGTCTGTACATAGTGGAGACCTTCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGG]


>consensus_9140#2 GCCGCTGTGAGTACCTCCTATAATGGTTGCTACTACTCATGATTGCAGTGACAAGCAACA AATTTTGTAGAATACATGATGATGAACCGTGTAGGAGTGTAGCTGGACAAGTGCAGCTTC ACATCTTCTTCTTTTGTGCCCAGCTGGTTCTTTGGGCAGAACCAAATCACTGTGGTGGTC TGTACATAGTGGAGACCTTCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9140#0      CTAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCAAGCCAAGGCCACCATGGACAGCACAA 60
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      GCAACAAGATGAAGAAGATGGAGCCGACGAGCGGCGGCCGCCACGGGACTCCGGGGCAGG 120
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TGGTGGGCCTGTGCGCTGCCCTCGTCACCGCCATGGCTGCCTCACTGCTCTGCTCCACCT 180
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      CCATGGCCCTCACCCCGGACGGGCAGGCATTGCTGGAGCTCAAGCTCTCCTTCAATGGCA 240
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      GCAGCCAGCGGCTGACGACCTGGAAGCCCACCGACCCTAACCCCTGCGGCTGGGAGGGCA 300
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TCTCCTGCTCCTTCCCCGACCTCAGGGTCCAATCCATAAATCTCCCTTACATGCAGCTTG 360
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      GGGGCATCATTTCACCTAACATTGGGAAGCTCGACAAGCTGCAGAGAATAGCATTGCACC 420
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      AGAACAGCTTGCATGGCCCAATCCCTTCTGAGATCAAGAACTGCACCGAGCTCAGAGCGA 480
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TTTACTTGAGAGCCAACTACCTACAAGGAGGCATCCCTTCAGAGATTGGCGAGCTCATTC 540
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      ACCTCACAATCTTGGACTTGTCCAGCAACCTGTTGAGGGGCACAATACCGGCGTCCATTG 600
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      GAAGCCTTACTCACCTTCGTTTCCTGAATCTGTCCACCAATTTCTTTTCTGGAGAAATCC 660
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      CAAATGTTGGTGTCCTTGGAACCTTCAAAAGCAGCTCGTTCGTTGGGAATTTGGAGCTTT 720
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      GTGGACTGCCCATCCAGAAGGCTTGCCGTGGAACCCTCGGGTTTCCTGCCGTGTTGCCGC 780
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      ATTCTGATCCCCTCTCCTCAGCTGGCGTTTCACCAATCAACAACAACAAAACATCGCACT 840
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TCCTGAATGGCATTGTGATTGGCTCAATGTCAACCATGGCTCTTGCATTGATCGCGGTAC 900
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TAGGCTTCCTCTGGATATGTCTTCTGTCCAGGAAGAAGAGCATTGGTGGAAGCTATGTTA 960
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      AAATGGACAAGCAAACTATCCCAGATGGTGCGAAGCTCGTGACATACCAGTGGAACCTTC 1020
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      CGTACTCATCAGGTGAGATCATCAGAAGGTTGGAGCTGCTTGATGAAGAGGATGTGGTCG 1080
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      GTTGTGGCGGTTTTGGTACCGTGTACAAGATGGTGATGGATGATGGCACGGCATTTGCTG 1140
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TCAAGAGGATTGATCTCAACCGTGAAGGGCGCGATAGGACCTTCGAGAAGGAGCTTGAGA 1200
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TTCTGGGCAGCATTAGGCACATTAACCTTGTCAATCTGCGAGGATACTGCCGTCTTCCTA 1260
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      CAGCCAAACTACTCATATATGATTTCTTGGAGCTGGGCAGTTTGGATTGCTACCTTCATG 1320
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      GAGATGCTCAGGATGATCAACCATTGAACTGGAATGCACGTATGAAGATTGCCCTGGGCT 1380
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      CTGCTCGAGGGCTGGCGTATTTGCACCACGATTGCTCACCCGTGATTGTGCACAGGGACA 1440
consensus_9140#1      ------------------------------------------------------------
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TCAAAGCCAGTAACATCCTTCTGGACAGAAGCTTGGAACCCCGCGTATCAGATTTTGGCC 1500
consensus_9140#1      ---------------------------------TGGAACCCCGCGTATCAGATTT-GGCC 26
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TTGCAAGGCTGCTTGTAGATAATGATGCCCACGTTACCACTGTTGTCGCGGGTACTTTTG 1560
consensus_9140#1      TTGCAAGGCTGCTNGTAGATAATGATGCCCACGTTACCACTGTTGTCGCGGGTACTTTNG 86
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      GATACCTAGCACCAGAATACCTGCAAAATGGCCATGCTACTGAAAAATCTGATGTGTATA 1620
consensus_9140#1      GATACCTAGCACCAGAATACCTGCAAAATGGCCATGCTACTGAAAAATTTGATGTGTATA 146
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      GCTTTGGAGTGCTTTTGCTCGAGTTGGTGACCGGAAAGAGGCCTACAGATGCATGCTTCC 1680
consensus_9140#1      GCTTTGGAGTGCTTTTGCTCGAGTTGGTGACCGGAAAGAGGCCTACAGATGCATGCTTCC 206
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TCAAGAAGGGACTGAACATTGTTGGCTGGCTCAACACCCTGACGGGGGAGCATCGGCTGG 1740
consensus_9140#1      TCAAGAAGGGACTGAACATTGTTGGCTGGCTCAACACCCTGACGGGGGAGCATCGGCTGG 266
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      AGGAGATCATTGATGAGAACTGCGGTGATGTGGAAGTGGAAGCAGTCGAGGCGATCCTCG 1800
consensus_9140#1      AGGAGATCATTGATGAGAACTGCGGCGATGTGGAAGTGGAAGCAGTCGAGGCGATCCTCG 326
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      ACATTGCTGCGATGTGCACCGATGCAGACCCAGGCCAGCGTCCATCGATGAGCGCTGTCC 1860
consensus_9140#1      ACATTGTTGCGATGTGCACCGATGCAGACCCAGGCCAGCGTCCATCCATGAGCGCTGTCC 386
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TGAAGATGCTGGAGGAGGAGATCCTGTCTCCCTGCATGAGTGAGCTCTACTACGAGCAGC 1920
consensus_9140#1      TGAAGATGCTGGAGGAGGAGATCCTGTCCCCCTGCATGAGTGAGCTCTACTACGAGCAGC 446
consensus_9140#2      ------------------------------------------------------------
                                                                                  

consensus_9140#0      ACCTGGAACTCTGAGTGAGTACCTCCTATAATGGTTGCTACTACTCATGATTGCAGTGAC 1980
consensus_9140#1      ACCTGGAACTTTGAGTGAGTCCCTCCTATAATGGTTGCTACTACTCATGATTGCAGTGAC 506
consensus_9140#2      --------GCCGCTGTGAGTACCTCCTATAATGGTTGCTACTACTCATGATTGCAGTGAC 52
                                    ****** ***************************************

consensus_9140#0      AAGCAACAAATTTTGTAGA-TACATGATGATGAACCGTGTAGGAGTGTAGCTGGACAAGT 2039
consensus_9140#1      AAGCACCAAATTTTGTAGA-TACTTGATGATGACCCGTGTAGGAGTGTAGCTGGACAAGT 565
consensus_9140#2      AAGCAACAAATTTTGTAGAATACATGATGATGAACCGTGTAGGAGTGTAGCTGGACAAGT 112
                      ***** ************* *** ********* **************************

consensus_9140#0      GCAGCTTCACATCTTCTTCTTTTGTGCCCAGCTGGTTCTTTGGGCAGAACCAAATCACTG 2099
consensus_9140#1      GCAGCTTCACATCTTCTTCTTTTGTGCCCACCTGGTTCTTTGGGCAGAACCAAATCACTG 625
consensus_9140#2      GCAGCTTCACATCTTCTTCTTTTGTGCCCAGCTGGTTCTTTGGGCAGAACCAAATCACTG 172
                      ****************************** *****************************

consensus_9140#0      TGGTGGTCTGTACATAGTGGAGACCTTCTGTTCATCTTTTTTTTTCTCATTTATCTGTCT 2159
consensus_9140#1      TGGTGGTCTGTACATAGTGGAGACCTTCTGTTCATCTTTTTTTTTCTAAAAAAAAAAAAA 685
consensus_9140#2      TGGTGGTCTGTACATAGTGGAGACCTTCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA 232
                      ******************************** *              *   *       

consensus_9140#0      GGCTGCTGCAAATCCACTT---------------------------- 2178
consensus_9140#1      AA--------------------------------------------- 687
consensus_9140#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGG 279
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)