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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1148 fasta sequence
[AGCTACATATGGCAAGGTTCTCAAAGCTACAAGCTCTGTTTCTAGTATTCCTCTTTCAACTTAACTTGCAATCGCAATGGTCATATGGCCTTCAGAGAGATCAAAGCCGACTATACATCGTTTACCTTGGGGAGAGGCAGCACGAAGATGCTGATCTTGTCACTGCATCACACCATGATATGCTCACCTCAATTCTTGGGAGCAAGGAGGAGACTCTCAGGTCGATTGTCTACAGCTACAGGCATGGTTTTTCTGGCTTTTCTGCTATGCTCACACAATCACAAGCCAGAAAGATAGCGGGCCTGCCCGGGGTACTCAGTGTAACTGAAAACCAAATATACAAAACGCATACAACACGAAGTTGGGATTTTCTTGGACTTGATTACAAGCCGACAAATGGGCTGCTCGCGAAAGCTAGATATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCTTGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATGGACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAACAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAACGATGGACCCATCGCTCAGACGGTGGAGAACTCATCCCCGTGGTTACTAACGGTGGCTGCAGCCACCATGGATCGGTCTTTTCCTGTAGTGATCACCTTGGGAAATAATGAAAAGTTTGTGGCACAATCCTTCGTCGTAACAGGAAGTGCGAGTCAGTTCAGTGAAATACAAACGTATGACAATGGCAAC]
[+] EMBL CB628045 [AGCTACATATGGCAAGGTTCTCAAAGCTACAAGCTCTGTTTCTAGTATTCCTCTTTCAACTTAACTTGCAATCGCAATGGTCATATGGCCTTCAGAGAGATCAAAGCCGACTATACATCGTTTACCTTGGGGAGAGGCAGCACGAAGATGCTGATCTTGTCACTGCATCACACCATGATATGCTCACCTCAATTCTTGGGAGCAAGGAGGAGACTCTCAGGTCGATTGTCTACAGCTACAGGCATGGTTTTTCTGGCTTTTCTGCTATGCTCACACAATCACAAGCCAGAAAGATAGCGGGCCTGCCCGGGGTACTCAGTGTAACTGAAAACCAAATATACAAAACGCATACAACACGAAGTTGGGATTTTCTTGGACTTGATTACAAGCCGACAAATGGGCTGCTCGCGAAAGCTAGATATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGC ]
[+] EMBL CB633730 [ CTAGACATGGCAAGGTTCTCAAAGCTACAAGCTCTGTTTCTAGTATTCCTCTTTCAACTTAACTTGCAATCGCAATGGTCATATGGCCTTCAGAGAGATCAAAGCCGACTATACATCGTTTACCTTGGGGAGAGGCAGCACGAAGATGCTGATCTTGTCACTGCATCACACCATGATATGCTCACCTCAATTCTTGGGAGCAAGGAGGAGACTCTCAGGTCGATTGTCTACAGCTACAGGCATGGTTTTTCTGGCTTTTCTGCTATGCTCACACAATCACAAGCCAGAAAGATAGCGGGCCTGCCCGGGGTACTCAGTGTAACTGAAAACCAAATATACAAAACGCATACAACACGAAGTTGGGATTTTCTTGGACTTGATTACAAGCCGACAAATGGGCTGCTCGCGAAAGCTAGATATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCT ]
[+] EMBL CB631496 [ AGCTACACCCTCTGTTTCTAGTATTCCTCTTTCAACTTAACTTGCAATCGCAATGGTCATATGGCCTTCAGAGAGATCAAAGCCGACTATACATCGTTTACCTTGGGGAGAGGCAGCACGAAGATGCTGATCTTGTCACTGCATCACACCATGATATGCTCACCTCAATTCTTGGGAGCAAGGAGGAGACTCTCAGGTCGATTGTCTACAGCTACAGGCATGGTTTTTCTGGCTTTTCTGCTATGCTCACACAATCACAAGCCAGAAAGATAGCGGGCCTGCCCGGGGTACTCAGTGTAACTGAAAACCAAATATACAAAACGCATACAACACGAAGTTGGGATTTTCTTGGACTTGATTACAAGCCGACAAATGGGCTGCTCGCGAAAGCTAGATATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCTTG ]
[+] EMBL CB627085 [ TCTCAGGCCTATTGTCTACAGCTACAGGCATGGTTTTTCTGGCTTTTCTGCTATGCTCACACAATCACAAGCCAGAAAGATAGCGGGCCTGCCCGGGGTACTCAGTGTAACTGAAAACCAAATATACAAAACGCATACAACACGAAGTTGGGATTTTCTTGGACTTGATTACAAGCCGACAAATGGGCTGCTCGCGAAAGCTAGATATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCTTGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATGGACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAACAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAACGATGGACCCATCGCTCAGACGGTGGAGAA ]
[+] EMBL CB627959 [ ATTACCCGCCGACAAATGGGCTGCTCGCGAAAGCTAGATATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCTTGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATGGACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAACAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAACGATGGACCCATCGCTCAGACGGTGGAGAACTCATCCCCGTGGTTACTAACGGTGGCTGCAGCCACCATGGATCGGTCTTTTCCTGTAGTGATCACCTTGGGAAATAATGAAAAGTTTGTGGCACAATCCTTCGTCGTAACAGGAAGTGCGAGTCAGTTCAGTGAAATACAAACGTATGACAATGGCAAC]
consensusID : consensus_9143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence
[AATGGGAGGGAATGGGGTAATTAAATTAGTACAATTGAATTGCCTATCTTCTGGCTTAATTTTTTTTTGTGAATGCATGCAAAGCGCTAAGATGTTAGTTTGAATTTTAGTTAATTTGCTTTTGTGTTTGCAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCTTGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATGGACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAACAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAACGATGGACCCATCGCTCAGACGGTGGAGAACTCATCCCCGTGGTTACTAACGGTGGCTGCAGCCACCATGGATCGGTCTTTTCCTGTAGTGATCCCCAAGGGAAATAATGAAAAGTTTGTGGTATGCCTAAAA]
[-] EMBL CB630079 [AATGGGAGGGAATGGGGTAATTAAATTAGTACAATTGAATTGCCTATCTTCTGGCTTAATTTTTTTTTGTGAATGCATGCAAAGCGCTAAGATGTTAGTTTGAATTTTAGTTAATTTGCTTTTGTGTTTGCAGGAATCACACCCGAGTCGTCAAGCTTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCTTGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATGGACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAACAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAACGATGGACCCATCGCTCAGACGGTGGAGAACTCATCCCCGTGGTTACTAACGGTGGCTGCAGCCACCATGGATCGGTCTTTTCCTGTAGTGATCCCCAAGGGAAATAATGAAAAGTTTGTGGTATGCCTAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9143#0 AGCTACATATGGCAAGGTTCTCAAAGCTACAAGCTCTGTTTCTAGTATTCCTCTTTCAAC 60
consensus_9143#1 ------------------------------------------------------------
consensus_9143#0 TTAACTTGCAATCGCAATGGTCATATGGCCTTCAGAGAGATCAAAGCCGACTATACATCG 120
consensus_9143#1 ------------------------------------------------------------
consensus_9143#0 TTTACCTTGGGGAGAGGCAGCACGAAGATGCTGATCTTGTCACTGCATCACACCATGATA 180
consensus_9143#1 ------------------------------------------------------------
consensus_9143#0 TGCTCACCTCAATTCTTGGGAGCAAGGAGGAGACTCTCAGGTCGATTGTCTACAGCTACA 240
consensus_9143#1 ------------------------------------------------------------
consensus_9143#0 GGCATGGTTTTTCTGGCTTTTCTGCTATGCTCACACAATCACAAGCCAGAAAGATAGCGG 300
consensus_9143#1 ------------------------------------------------------------
consensus_9143#0 GCCTGCCCGGGGTACTCAGTGTAACTGAAAACCAAATATACAAAACGCATACAACACGAA 360
consensus_9143#1 -----------------AATGGGA--GGGAATGGGGTA-ATTAAATTAGTACAAT-TGAA 39
* ** * * ** ** * *** ***** ***
consensus_9143#0 GTTGGGATTTTCTTGGACTTGATTACAAGCCGACAA-ATGGGCTGCTCGCGAAAGCTAGA 419
consensus_9143#1 TTGCCTATCTTCT--GGCTTAATTTTTTTTTGTGAATGCATGCAAAGCGCTAAGATGTTA 97
* ** **** * *** *** * ** ** *** ** *
consensus_9143#0 TATGGAGAAGGCGTGATTATTGGTGTCGTTGACACAGGAATCACACCCGAGTCGTCAAGC 479
consensus_9143#1 GTTTGAATTTTAGTTAAT-TTGCTTTTGTGTTTGCAGGAATCACACCCGAGTCGTCAAGC 156
* ** ** * * *** * * ** **************************
consensus_9143#0 TTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGT 539
consensus_9143#1 TTTGATGATGCTGGATATGGCACCCCTCCATCGAAGTGGAAGGGGATTTGCCAAGTAGGT 216
************************************************************
consensus_9143#0 CCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTAC 599
consensus_9143#1 CCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTAC 276
************************************************************
consensus_9143#0 GATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCAT 659
consensus_9143#1 GATGTCCCAAACGGCACGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCAT 336
************************************************************
consensus_9143#0 GGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGG 719
consensus_9143#1 GGCACCCACACGGCCTCAACAGCCGGTGGCAACATCGTCCACAATGTTAGCCGTCTCGGG 396
************************************************************
consensus_9143#0 CTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCT 779
consensus_9143#1 CTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAAGGCT 456
************************************************************
consensus_9143#0 TGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATG 839
consensus_9143#1 TGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATG 516
************************************************************
consensus_9143#0 GACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAA 899
consensus_9143#1 GACGATGCTATCCATGATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAA 576
************************************************************
consensus_9143#0 CAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAAC 959
consensus_9143#1 CAAATAGGCACACTGCATGTTGTTGCTAATGGCATTGCTGTTGTGTACGCTGCTGGGAAC 636
************************************************************
consensus_9143#0 GATGGACCCATCGCTCAGACGGTGGAGAACTCATCCCCGTGGTTACTAACGGTGGCTGCA 1019
consensus_9143#1 GATGGACCCATCGCTCAGACGGTGGAGAACTCATCCCCGTGGTTACTAACGGTGGCTGCA 696
************************************************************
consensus_9143#0 GCCACCATGGATCGGTCTTTTCCTGTAGTGATCACCTTGGGAAATAATGAAAAGTTTGTG 1079
consensus_9143#1 GCCACCATGGATCGGTCTTTTCCTGTAGTGATCCCCAAGGGAAATAATGAAAAGTTTGTG 756
********************************* ** **********************
consensus_9143#0 GCACAATCCTTCGTCGTAACAGGAAGTGCGAGTCAGTTCAGTGAAATACAAACGTATGAC 1139
consensus_9143#1 GTATG--CCTAAAA---------------------------------------------- 768
* * ***
consensus_9143#0 AATGGCAAC 1148
consensus_9143#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||