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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1155 fasta sequence
[TCGCCCAAGCCTTCGTCGACAGAAAG-AAAAAAAAATCCAAACCTCAGAGAAACCCTAGGCCGGGTCGCGGCGAGTCGGCGGCGATGGCCGGGTACCGGAGCCGGAGCCGGAGCTACAGCCCGCAGCCGCGCCGGAGGTACAGCCGGAGCCCCCCGCGGTACAAGCGGTACGATGACCCGCGCGACCGCTATCCTCGCGGCGGAGGTGGAGGTGGAGGTGGAGGCGAAGGGCCCCGCCGCGGGTATGGCCGGCCGCCTGCGCCGACCGGGCTCCTCGTCCGCAACATCTCGCTCACCGCAAGGCCTGAAGATATTCGTATTCCGTTTGAGCAATTTGGCCCTGTAAAGGATGTCTACCTTCCAAGAAATTTCCATACAAGGGAATTACGTGGCTTTGGGTTTGTAAAATTCCGCTATCCAGAAGATGCTGCAGTGGCCAAGCAAGAATTGAATCATCAAGTTATTGGTGGACGAGAGATTTCAATAGTTTTTGCCGAGGAGAACAGAAAAACCCCACAAGAAATGCGGATGAGGACAAGAACAAGTGGAAGATACATGGATGGTAGCCACAGAAGGCGGTCAGTATCAAGATCTCCAAGGTCTCGTTACCATTCTTATTCACCTTCACCCTCTCCAGCTAGACGTGACTACAGGGATCACCGTGATGATTATTCACCTGGGGAATCACTCTCTCCACATGGTCAGGACAAGCGGCACCACAGATCAAATGGTCGATCTGCTAGCCCAGATGAGCTCGAGCGTCATGTATCTCCATCCAATAATGGACATGGTCCTCCAGTTGATGGGAAAAGCTGATAAAGATCTCGCTCCAAGGCGAGGCAAGCGTTTGAAGTTTGGAGTTCTTGGATCAAGAGTTGGAAGTTGGAACTAGGGAGCATGCAAATTACACCACCATGAAATGTACCGTGGTAGTGCCTTTTATGCTATTTTGTAGAATAGATAAGCAAAGCCTGGTAGCGAAGTAAGTTTGTACACTCCATATGCAGTTTGCCTATCGATACTTAGGTTAGCGCCTGCTGCTTTTGCTTTTGTTGATCTGTTTTAAATGATTTTCTATCTGATCTTTCTTAGTTTGTTTGCTGCCATGCCGACATGCATCTTGTGCCCACTTATCTATTTGATTATGTTCCAAAAA]
[+] EMBL AK103387 [TCGCCCAAGCCTTCGTCGACAGAAAG AAAAAAAAATCCAAACCTCAGAGAAACCCTAGGCCGGGTCGCGGCGAGTCGGCGGCGATGGCCGGGTACCGGAGCCGGAGCCGGAGCTACAGCCCGCAGCCGCGCCGGAGGTACAGCCGGAGCCCCCCGCGGTACAAGCGGTACGATGACCCGCGCGACCGCTATCCTCGCGGCGGAGGTGGAGGTGGAGGTGGAGGCGAAGGGCCCCGCCGCGGGTATGGCCGGCCGCCTGCGCCGACCGGGCTCCTCGTCCGCAACATCTCGCTCACCGCAAGGCCTGAAGATATTCGTATTCCGTTTGAGCAATTTGGCCCTGTAAAGGATGTCTACCTTCCAAGAAATTTCCATACAAGGGAATTACGTGGCTTTGGGTTTGTAAAATTCCGCTATCCAGAAGATGCTGCAGTGGCCAAGCAAGAATTGAATCATCAAGTTATTGGTGGACGAGAGATTTCAATAGTTTTTGCCGAGGAGAACAGAAAAACCCCACAAGAAATGCGGATGAGGACAAGAACAAGTGGAAGATACATGGATGGTAGCCACAGAAGGCGGTCAGTATCAAGATCTCCAAGGTCTCGTTACCATTCTTATTCACCTTCACCCTCTCCAGCTAGACGTGACTACAGGGATCACCGTGATGATTATTCACCTGGGGAATCACTCTCTCCACATGGTCAGGACAAGCGGCACCACAGATCAAATGGTCGATCTGCTAGCCCAGATGAGCTCGAGCGTCATGTATCTCCATCCAATAATGGACATGGTCCTCCAGTTGATGGGAAAAGCTGATAAAGATCTCGCTCCAAGGCGAGGCAAGCGTTTGAAGTTTGGAGTTCTTGGATCAAGAGTTGGAAGTTGGAACTAGGGAGCATGCAAATTACACCACCATGAAATGTACCGTGGTAGTGCCTTTTATGCTATTTTGTAGAATAGATAAGCAAAGCCTGGTAGCGAAGTAAGTTTGTACACTCCATATGCAGTTTGCCTATCGATACTTAGGTTAGCGCCTGCTGCTTTTGCTTTTGTTGATCTGTTTTAAATGATTTTCTATCTGATCTTTCTTAGTTTGTTTGCTGCCATGCCGACATGCATCTTGTGCCCACTTATCTATTT ]
[+] EMBL C27115 [ CGACAGAAAGAAAAAAAAAATCCAAACCTCAGAGAAACCCTAGGCCGGGTCGCGNGNAGTCGGCGGCGATGGCCGGTTACCGATGCCGGAGCCGGAGCTACAGCCCGCAGCCG GCCGGA GTACAGCCGGAGCCCCCCGCGGTACAAGC GTACGATGACCCGCGCGACCG TATCCTCGCGGCGGAGGTGGAGGTGGAGGTNGAGGCGAAGGGCCCCG CGCGGGTATGGCCGGCCG CTGCG CGACCGGGCTCCTCGTCCGCAACATCTCGCTCACCGCAA GCCTGAAGATATTCGTATTNCGTTTGAGCAATTTGGCCCTGTAAAGGATGTCTACCTTCCAAG AATTTCCATACAAGGG ATTACGTGGCTTTGGGTTTGT AAATTCCG TATCCAGAAG ]
[+] EMBL AU166819 [ cnCAGATCAAATGGTCGATCTGCTAGCCCAGATGAGCTCGAGCGTCATGTATCTCCATCCAATAATGGACATGGTCCTCCAGTTGATGGGAAAAGCTGATAAAGATCTCGCTCCAAGGCGAGGCAAGCGTTTGAAGTTTGGAGTTCTTGGATCAAGAGTTGGAAGTTGGAACTAGGGAGCATGCAAATTACACCNCCATGAAATGTACCGTGGTAGTGCCTTTTATGCTATTTTGTAGAATAGATAAGCAAAGCCTGGTAGCGAAGTAAGTTTGTACACTCCATATGCAGTTTGCCTATCGATACTTAGGTTAGCGCCTGCTGCTTTTGCTTTTGTTGATCTGTTTTAAATGATTTTCTATCTGATCTTTCTTAGTTTGTTTGCTGCCATGCCGACATGCATCTTGTGCCCACTTATCTATTTGATTATGTTCCAAAAA]
consensusID : consensus_9145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[AGATAGAGTGGCCCTGTTGCCCCGGGTTTAAAGATAATCTTTGGTTAAGAAACCTGAGGAAAAGAGTTATTTTCAAGTGTGNTGATGNTGGTGAGNTTAGTCGTATTGCACATTGCATGTTTGGATCAAAGTGGGTAACTTATACTGGGATTGAACAGGGATCCCCCGTGATGATTATTCACCTGGGGAATCACTCTCTCCACATGGTCAGGACAAGCGGCACCACAGATCAAATGGTCGATCTGCTAGCCCAGATGAGCTCGAGCGTCATGTATCTCCATCCAATACTGGACATGGTCCTCCAGTTGATGGGAAAAGCTGATAAAGATCTCGCTCCAAGGCGAGGCAAGCGTTTGAAGTTTGGAGTTCTTGGATCAAGAGTTGGAAGTTGGAACTAGGGAGCATGCAAATTACAACACCATGAAATGTACCGTGGTAGTGCCTTTTATGCTATTTTGTAGAATAGATAAGCAAAGCCTGGTAGCGAAGTAAGTTTGTACACTCCATATGCAGTTTGCCTATCGATACTTAGGTTAGCGCCTGCTGCTTTTGCTTTTGTTGACCTGTTTTAAATGATTCTCTATCTGATCTTTCTTAGTTTGTTTGCTGCCATGCCGACATGCATCTTGTGCCCACTTATCTATTTGATTATGTTCCATGGCTTCTACCGTTTTTCTGTTTTCAAAAAAAAAA]
[-] EMBL CA761945 [AGATAGAGTGGCCCTGTTGCCCCGGGTTTAAAGATAATCTTTGGTTAAGAAACCTGAGGAAAAGAGTTATTTTCAAGTGTGNTGATGNTGGTGAGNTTAGTCGTATTGCACATTGCATGTTTGGATCAAAGTGGGTAACTTATACTGGGATTGAACAGGGATCCCCCGTGATGATTATTCACCTGGGGAATCACTCTCTCCACATGGTCAGGACAAGCGGCACCACAGATCAAATGGTCGATCTGCTAGCCCAGATGAGCTCGAGCGTCATGTATCTCCATCCAATACTGGACATGGTCCTCCAGTTGATGGGAAAAGCTGATAAAGATCTCGCTCCAAGGCGAGGCAAGCGTTTGAAGTTTGGAGTTCTTGGATCAAGAGTTGGAAGTTGGAACTAGGGAGCATGCAAATTACAACACCATGAAATGTACCGTGGTAGTGCCTTTTATGCTATTTTGTAGAATAGATAAGCAAAGCCTGGTAGCGAAGTAAGTTTGTACACTCCATATGCAGTTTGCCTATCGATACTTAGGTTAGCGCCTGCTGCTTTTGCTTTTGTTGACCTGTTTTAAATGATTCTCTATCTGATCTTTCTTAGTTTGTTTGCTGCCATGCCGACATGCATCTTGTGCCCACTTATCTATTTGATTATGTTCCATGGCTTCTACCGTTTTTCTGTTTTCAAAAAAAAAA]
consensusID : consensus_9145#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[TTAAGAAGGAGTGGCACTGTTGCCCGGGGTTTAAAGATAATCTTTGGCTAAGAAACCTGAGGAAAAGAGTTATTTTCAAGTGTGCTGATGCTGTTGAGCTTAGTCCATTGCACATTGCATGTTTGGATCAAAGTGGGTAACTTATACTGGGATTGAACAGGGATCACCGTGATGATTATTCACCTGGGGAATCACTCTCTCCACATGGTCAGGACAAGCGGCACCACAGATCAAATGGTCGATTTGCTAGCCCAGATGAGCTCGAGCGTCATGTATCTCCATCCAATAATGGACATGGTCCTCCAGTTGATGGGAAAAGCTGATAAAGATCTCGCTCCAAGGCGAGGCAAGCGTTTGAAGTTTGGAGTTCTTGGATCAAGAGTTGGAAGTTGGAACTAGGGAGCATGCAAATTACAACACCATGAAATGTACCGTGGTAGTGCCTTTTATGCTATTTTGTAGAATAGATAAGCAAAGCCTGGTAGCGAAGTAAGTTTGTACACTCCATATGCAGTTTGCCTATCGATACTTAGGTTAGCGCCTGCTGCTTTTGCTTTTGTTGACCTGTTTTAAATGATTTTCTATCTGATCTTTCTTAGTTTGTTTGCTGCCATGCCGACATGCATCTTGTGCCCACTTATCTATTTGATTATGTTCCATGGCTTCTAAAAAAAAAAAAAAAA]
[-] EMBL CA761697 [TTAAGAAGGAGTGGCACTGTTGCCCGGGGTTTAAAGATAATCTTTGGCTAAGAAACCTGAGGAAAAGAGTTATTTTCAAGTGTGCTGATGCTGTTGAGCTTAGTCCATTGCACATTGCATGTTTGGATCAAAGTGGGTAACTTATACTGGGATTGAACAGGGATCACCGTGATGATTATTCACCTGGGGAATCACTCTCTCCACATGGTCAGGACAAGCGGCACCACAGATCAAATGGTCGATTTGCTAGCCCAGATGAGCTCGAGCGTCATGTATCTCCATCCAATAATGGACATGGTCCTCCAGTTGATGGGAAAAGCTGATAAAGATCTCGCTCCAAGGCGAGGCAAGCGTTTGAAGTTTGGAGTTCTTGGATCAAGAGTTGGAAGTTGGAACTAGGGAGCATGCAAATTACAACACCATGAAATGTACCGTGGTAGTGCCTTTTATGCTATTTTGTAGAATAGATAAGCAAAGCCTGGTAGCGAAGTAAGTTTGTACACTCCATATGCAGTTTGCCTATCGATACTTAGGTTAGCGCCTGCTGCTTTTGCTTTTGTTGACCTGTTTTAAATGATTTTCTATCTGATCTTTCTTAGTTTGTTTGCTGCCATGCCGACATGCATCTTGTGCCCACTTATCTATTTGATTATGTTCCATGGCTTCTAAAAAAAAAAAAAAAA]
consensusID : consensus_9145#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence
[GAAGGCGGTCAGTATCAAGATCTCCAAGGTCTCGTTACCATTCTTATTCACCTTCACCCTCTCCAGCTAGACGTGACTACAGGTATCATCTCAATATTTTAGTATTTACATATAGCATAGCAAATACGCTTGTCCTCTCCTGTTTGTCAGTGTTTCACTCTTTTTCCTTTCAAACATCTCTGTGCCAAGTTATTTATTTGTGCTTTCGGCATATCCTGATACGCCGTTGACATTTATGATTCATTAATTTTTGTTTTGGCGGTTGCGAGTGTATTGTTGTGAT]
[+] EMBL CF323648 [GAAGGCGGTCAGTATCAAGATCTCCAAGGTCTCGTTACCATTCTTATTCACCTTCACCCTCTCCAGCTAGACGTGACTACAGGTATCATCTCAATATTTTAGTATTTACATATAGCATAGCAAATACGCTTGTCCTCTCCTGTTTGTCAGTGTTTCACTCTTTTTCCTTTCAAACATCTCTGTGCCAAGTTATTTATTTGTGCTTTCGGCATATCCTGATACGCCGTTGACATTTATGATTCATTAATTTTTGTTTTGGCGGTTGCGAGTGTATTGTTGTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9145#1 ------------------------------------------------------------
consensus_9145#2 ------------------------------------------------------------
consensus_9145#0 TCGCCCAAGCCTTCGTCGACAGAAAGAAAAAAAAATCCAAACCTCAGAGAAACCCTAGGC 60
consensus_9145#3 ------------------------------------------------------------
consensus_9145#1 ------------------------------------------------------------
consensus_9145#2 ------------------------------------------------------------
consensus_9145#0 CGGGTCGCGGCGAGTCGGCGGCGATGGCCGGGTACCGGAGCCGGAGCCGGAGCTACAGCC 120
consensus_9145#3 ------------------------------------------------------------
consensus_9145#1 ------------------------------------------------------------
consensus_9145#2 ------------------------------------------------------------
consensus_9145#0 CGCAGCCGCGCCGGAGGTACAGCCGGAGCCCCCCGCGGTACAAGCGGTACGATGACCCGC 180
consensus_9145#3 ------------------------------------------------------------
consensus_9145#1 ------------------------------------------------------------
consensus_9145#2 ------------------------------------------------------------
consensus_9145#0 GCGACCGCTATCCTCGCGGCGGAGGTGGAGGTGGAGGTGGAGGCGAAGGGCCCCGCCGCG 240
consensus_9145#3 ------------------------------------------------------------
consensus_9145#1 ------------------------------------------------------------
consensus_9145#2 ------------------------------------------------------------
consensus_9145#0 GGTATGGCCGGCCGCCTGCGCCGACCGGGCTCCTCGTCCGCAACATCTCGCTCACCGCAA 300
consensus_9145#3 ------------------------------------------------------------
consensus_9145#1 ------------------------------------------------------------
consensus_9145#2 ------------------------------------------------------------
consensus_9145#0 GGCCTGAAGATATTCGTATTCCGTTTGAGCAATTTGGCCCTGTAAAGGATGTCTACCTTC 360
consensus_9145#3 ------------------------------------------------------------
consensus_9145#1 ------------------------------------------------------------
consensus_9145#2 ------------------------------------------------------------
consensus_9145#0 CAAGAAATTTCCATACAAGGGAATTACGTGGCTTTGGGTTTGTAAAATTCCGCTATCCAG 420
consensus_9145#3 ------------------------------------------------------------
consensus_9145#1 ----------------------------------------------------AGATAGAG 8
consensus_9145#2 -------------------------------------------------TTAAGAAGGAG 11
consensus_9145#0 AAGATGCTGCAGTGGCCAAGCAAGAATTGAATCATCAAGTTATTGGTGGACGAGAGATTT 480
consensus_9145#3 ------------------------------------------------------------
consensus_9145#1 TGGCCCTGTTGCCCCGGGTTTAAAGATAATCTTTGGTTAAGAAACC--TGAGGAAAAGAG 66
consensus_9145#2 TGGCACTGTTGCCCGGGGTTTAAAGATAATCTTTGGCTAAGAAACC--TGAGGAAAAGAG 69
consensus_9145#0 CAATAGTTTTTGCCGAGGAGAACAGAAAAACCCCACAAGAAATGCGGATGAGGACAAGAA 540
consensus_9145#3 ------------------------------------------------------------
consensus_9145#1 TTATTTTCAAGTGTGNTGATGNTGGT----GAGNTTAGTCG-TATTG------------- 108
consensus_9145#2 TTATTTTCAAGTGTGCTGATGCTGTT----GAGCTTAGTC--CATTG------------- 110
consensus_9145#0 CAAGTGGAAGATACATGGATGGTAGCCACAGAAGGCGGTCAGTATCAAGATCTCCAAGGT 600
consensus_9145#3 ------------------------------------------------------------
consensus_9145#1 CACATTGCATGTTTGGATCAAAGTGGGTAACTTATACTGGGATTGA--ACAGGGATCCCC 166
consensus_9145#2 CACATTGCATGTTTGGATCAAAGTGGGTAACTTATACTGGGATTGA--ACAGGGATCACC 168
consensus_9145#0 CTCGTTACCATTCTTATTCACCTTCACCCTCTCCAGCTAGACGTGACTACAGGGATCACC 660
consensus_9145#3 ----------------------GAAGGCGGTCAGTATCAAGATCTC---CAAGGTCTCGT 35
** **
consensus_9145#1 CGTGATGATTATTCACCTGGGGAATCACTCTCTCCACATGGTCAGGACAAGCGGCACCAC 226
consensus_9145#2 -GTGATGATTATTCACCTGGGGAATCACTCTCTCCACATGGTCAGGACAAGCGGCACCAC 227
consensus_9145#0 -GTGATGATTATTCACCTGGGGAATCACTCTCTCCACATGGTCAGGACAAGCGGCACCAC 719
consensus_9145#3 TACCATTCTTATTCACCT------TCACCCTCTCCAGCTAGACGTGACTACAGGTATCAT 89
** ********** **** ******* * * * *** * ** * **
consensus_9145#1 AGATCAAATGGTCGATCTGCTAGCCCAGATGAGCTCGAGCGTCATGTATCTCCATCCAAT 286
consensus_9145#2 AGATCAAATGGTCGATTTGCTAGCCCAGATGAGCTCGAGCGTCATGTATCTCCATCCAAT 287
consensus_9145#0 AGATCAAATGGTCGATCTGCTAGCCCAGATGAGCTCGAGCGTCATGTATCTCCATCCAAT 779
consensus_9145#3 ---CTCAATATTTTAGTATTTA---CATAT-AGCATAGCAAATACGCTTGTCC-TCTCCT 141
*** * * ** ** ** *** * * * *** ** *
consensus_9145#1 ACTGGACATGGTCCTCCAGTTGATGGGAAAAGCTGATAAAGATCTCGCTCCAAGGCGAGG 346
consensus_9145#2 AATGGACATGGTCCTCCAGTTGATGGGAAAAGCTGATAAAGATCTCGCTCCAAGGCGAGG 347
consensus_9145#0 AATGGACATGGTCCTCCAGTTGATGGGAAAAGCTGATAAAGATCTCGCTCCAAGGCGAGG 839
consensus_9145#3 GTTTGTCAGTGTTTCACTCTTTTTC-------CTTTCAAACATC----TCTGTGCCAAGT 190
* * ** ** * ** * ** *** *** ** * * **
consensus_9145#1 CAAGCGTTTGAAGTTT-GGAGTTCTTGGATCAAGAGTTGGAAGTTGGAACTAGGGAGCAT 405
consensus_9145#2 CAAGCGTTTGAAGTTT-GGAGTTCTTGGATCAAGAGTTGGAAGTTGGAACTAGGGAGCAT 406
consensus_9145#0 CAAGCGTTTGAAGTTT-GGAGTTCTTGGATCAAGAGTTGGAAGTTGGAACTAGGGAGCAT 898
consensus_9145#3 TATTTATTTGTGCTTTCGGCATATCCTGATACGCCGTTGACATTTATGATTCATTA--AT 248
* **** *** ** * *** **** * ** * * * **
consensus_9145#1 GCAAATTACAACACCATGAAATGTACCGTGGTAGTGCCTTTTATGCTATTTTGTAGAATA 465
consensus_9145#2 GCAAATTACAACACCATGAAATGTACCGTGGTAGTGCCTTTTATGCTATTTTGTAGAATA 466
consensus_9145#0 GCAAATTACACCACCATGAAATGTACCGTGGTAGTGCCTTTTATGCTATTTTGTAGAATA 958
consensus_9145#3 TTTTGTTTTGGCGGTTGCGAGTGTATTGTTGTGAT------------------------- 283
** * * **** ** ** *
consensus_9145#1 GATAAGCAAAGCCTGGTAGCGAAGTAAGTTTGTACACTCCATATGCAGTTTGCCTATCGA 525
consensus_9145#2 GATAAGCAAAGCCTGGTAGCGAAGTAAGTTTGTACACTCCATATGCAGTTTGCCTATCGA 526
consensus_9145#0 GATAAGCAAAGCCTGGTAGCGAAGTAAGTTTGTACACTCCATATGCAGTTTGCCTATCGA 1018
consensus_9145#3 ------------------------------------------------------------
consensus_9145#1 TACTTAGGTTAGCGCCTGCTGCTTTTGCTTTTGTTGACCTGTTTTAAATGATTCTCTATC 585
consensus_9145#2 TACTTAGGTTAGCGCCTGCTGCTTTTGCTTTTGTTGACCTGTTTTAAATGATTTTCTATC 586
consensus_9145#0 TACTTAGGTTAGCGCCTGCTGCTTTTGCTTTTGTTGATCTGTTTTAAATGATTTTCTATC 1078
consensus_9145#3 ------------------------------------------------------------
consensus_9145#1 TGATCTTTCTTAGTTTGTTTGCTGCCATGCCGACATGCATCTTGTGCCCACTTATCTATT 645
consensus_9145#2 TGATCTTTCTTAGTTTGTTTGCTGCCATGCCGACATGCATCTTGTGCCCACTTATCTATT 646
consensus_9145#0 TGATCTTTCTTAGTTTGTTTGCTGCCATGCCGACATGCATCTTGTGCCCACTTATCTATT 1138
consensus_9145#3 ------------------------------------------------------------
consensus_9145#1 TGATTATGTTCCATGGCTTCTACCGTTTTTCTGTTTTCAAAAAAAAAA 693
consensus_9145#2 TGATTATGTTCCATGGCTTCTAAAAA-----------AAAAAAAAAAA 683
consensus_9145#0 TGATTATGTTCCAAAAA------------------------------- 1155
consensus_9145#3 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||