These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 859 fasta sequence [GTCCCTATCCCATCCGTCGTCCGTCCCCGTACGTCCGCCACCCAGTCGCCTTCCCCCCTCCCTCCGTCTCCACCGCTTCTCCCGCCGCCTCTTCTCCTCCAACCACCAGANGGCGACCACCGCGGCACANACACAGAGACCCCCANATGCTTCCGTCGACTCCGATCANNAGCGGTTNGCCACCAGCCCACCACCAGTGAGTGACGCGACGCGACCGGCGGCGGCGGCGATGGGCAGCGTGGACTTCGGCCTCGTCGAGATCCACCCCGGGGAGATCCGGTTCGAATTTGAGGTGAAGAAGAAAAGTTCATGTTATGTCTGTCTAGTGAACAAATCAGAGGAATATGTTGCATTCAAGGTCAAAACAACTTCTCCAAAAAGGTATTGTGTTCGACCAAATGTAGGAGTCATTCTTCCAAGGGCAACATGTGTTTTTACAGTTATTATGCAAGCACAAATGATTGCTCCACCAGATCTGCAAATAAGAGACAAGTTTCTTGTGCAGACCACAGTTGTTCCTTTTGGTACAGCTGACGAAGACATTGCTCCTGCTTTTTTTTCCAAAGAAGTGGGAAGATATATCGAGGAGAATAAGCTGAGAGTTGTTCTTGTCAGTGCGACTCAACTTGAAGAACAGCAACTCATTGCAGGAGTTCCCAGTGCTAAGACTGGTGTTGAGGTTCGTGTGGCAAAAGAGACACTGAATATTGAGAGTGAAGCATCTAATGTCATGAACGAAGTTCATCATTCCTTGAAAACAAACTTCCCCCCTCTGAGAGAAAATCCAGCTACTTTGAACGAAATGCCCTTCCCTGTAAAACAAACAACTATTCTGGCCCCATCAAAAGAAGTTCCAGCT] [+] EMBL OSS11952A [GTCCCTATCCCATCCGTCGTCCGTCCCCGTACGTCCGCCACCCAGTCGCCTTCCCCCCTCCCTCCGTCTCCACCGCTTCTCCCGCCGCCTCTTCTCCTCCAACCACCAGANGGCGACCACCGCGGCACANACACAGAGACCCCCANATGCTTCCGTCGACTCCGATCANNAGCGGTTN ] [+] EMBL AK102012 [ TATCCCATCCGTCGTCCGTCCCCGTACGTCCGCCACCCAGTCGCCTTCCCCCCTCCCTCCGTCTCCACCGCTTCTCCCGCCGCCTCTTCTCCTCCAACCACCAGACGGCGACCACCGCGGCACACACACAGAGACCCCCAGATGCTTCCGCCGACTCCGATCAGCAGCCGCTCGCCACCAGCCCACCACCAGTGAGTGACGCGACGCGACCGGCGGCGGCGGCGATGGGCAGCGTGGACTTCGGCCTCGTCGAGATCCACCCCGGGGAGATCCGGTTCGAATTTGAGGTGAAGAAGAAAAGTTCATGTTATGTCTGTCTAGTGAACAAATCAGAGGAATATGTTGCATTCAAGGTCAAAACAACTTCTCCAAAAAGGTATTGTGTTCGACCAAATGTAGGAGTCATTCTTCCAAGGGCAACATGTGTTTTTACAGTTATTATGCAAGCACAAATGATTGCTCCACCAGATCTGCAAATAAGAGACAAGTTTCTTGTGCAGACCACAGTTGTTCCTTTTGGTACAGCTGACGAAGACATTGCTCCTGCTTTTTTTTCCAAAGAAGTGGGAAGATATATCGAGGAGAATAAGCTGAGAGTTGTTCTTGTCAGTGCGACTCAACTTGAAGAACAGCAACTCATTGCAGGAGTTCCCAGTGCTAAGACTGGTGTTGAGGTTCGTGTGGCAAAAGAGACACTGAATATTGAGAGTGAAGCATCTAATGTCATGAACGAAGTTCATCATTCCTTGAAAACAAACTTCCCCCCTCTGAGAGAAAATCCAGCTACTTTGAACGAAATGCCCTTCCCTGTAAAACAAACAACTATTCTGGCCCCATCAAAAGAAGTTCCAGCT] consensusID : consensus_9154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [GAGGGAATTATTTCACTTCCATAGTCCATATATTGACCTTCATCTTTCTACTGCTCCTATTGTAATCAATTATTTGCTACTCTATAGGGGATGCCATGCATCATTCACCATTTTAGAAAAATCATATTGAGTGGCAAAAGATCTTACCACATATATAGTGGTGAATAATGGTTACAACAAAGAGCATGGGTACCCTAAAATTAGCCATTTTGTCGATTGGCATATGCTCCAGCTCCTCCTTGTTGGTTGCGGTCATTGTCAACTTGTCATATTAAAATTAAAAATAGTCCTCTTATATCTACTGCAGTCATTTACCCTTTGAGAGATTTAAGTGAATGCCAAAATATCTTACCTGCCCAAAGATTTGACTAATAGCACCGATTGTTAAACTAATGGGATTGCAGTGAATATTCTTACCACATGCAACTGTTTGTCTTACAGGACCAAATATGAGCAGAGGACTTCTATATGACCTTATCTATGCTACATTTTTCTAGTTCTTATATAACCATCTGGATGAAATCTTGTACTATCATTTTTGAAGATATATATATATATATATATATATATATATATATATATATATATATATATTTATGTGCTGTGCTTTTTTTCTTTGTTGACAGTTGAGGTGAAGAAGAAAAGTTCATGTTCTGTCTGTCTAGTGAACAAATCAGAGGAATATGTTGCATTCAANGTCAAAACA] [+] EMBL CB632703 [GAGGGAATTATTTCACTTCCATAGTCCATATATTGACCTTCATCTTTCTACTGCTCCTATTGTAATCAATTATTTGCTACTCTATAGGGGATGCCATGCATCATTCACCATTTTAGAAAAATCATATTGAGTGGCAAAAGATCTTACCACATATATAGTGGTGAATAATGGTTACAACAAAGAGCATGGGTACCCTAAAATTAGCCATTTTGTCGATTGGCATATGCTCCAGCTCCTCCTTGTTGGTTGCGGTCATTGTCAACTTGTCATATTAAAATTAAAAATAGTCCTCTTATATCTACTGCAGTCATTTACCCTTTGAGAGATTTAAGTGAATGCCAAAATATCTTACCTGCCCAAAGATTTGACTAATAGCACCGATTGTTAAACTAATGGGATTGCAGTGAATATTCTTACCACATGCAACTGTTTGTCTTACAGGACCAAATATGAGCAGAGGACTTCTATATGACCTTATCTATGCTACATTTTTCTAGTTCTTATATAACCATCTGGATGAAATCTTGTACTATCATTTTTGAAGATATATATATATATATATATATATATATATATATATATATATATATATATTTATGTGCTGTGCTTTTTTTCTTTGTTGACAGTTGAGGTGAAGAAGAAAAGTTCATGTTCTGTCTGTCTAGTGAACAAATCAGAGGAATATGTTGCATTCAANGTCAAAACA] consensusID : consensus_9154#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 654 fasta sequence [TTTTTTTTTTTTTTTTTTTGAAAAAACTGGAACTTCTTTTAATGGGGGCAAAATAGTTGTTTGTCTTACAGGGAAGGGAATTTCATTCAAAATAGCTGGATTTTCTCTAAAAAAACAGCTTTGTTTTCAGGGAATGAGGAAGGGCATTCGTTGCAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGGGACCACTTTCTGCTGAAATAGTTGGAACTTCTTCTGATGGGGGCAAAATAGTTGTTTGTTTTACAGGGAAGGGCACTTCATTCAAAGTAGGTGGATTTTCTCTGAAAGGGGGGAAACTTGTTTTCAGCGAAGGATGAACTGCATTACTTGAAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGCGAGCACTTTCTGCTGAAATTGCTGGAACTTCTTTCGACGGCGCCAAAATACCCGTCTGCTCCACGCGCAGGCCATTCCTTTCCAACCCGATCGATCCTTTCTCAGAGGGTGGACAGCCGGTCTCAGCCGCCGGCACCGCCACGGCCCAGCGGTGGAGCCATTGCGTATGCCGCCCCGCGGCAACACGGCCGGGCCCCGATATATCCTATTTCCCTGTTCCCGGCCGAGCCCCAGCCATCCAGCCCCTGCCCGTCTCAGGCGCGGCCCACCACCCGAGAA] [+] EMBL CA759965 [TTTTTTTTTTTTTTTTTTTGAAAAAACTGGAACTTCTTTTAATGGGGGCAAAATAGTTGTTTGTCTTACAGGGAAGGGAATTTCATTCAAAATAGCTGGATTTTCTCTAAAAAAACAGCTTTGTTTTCAGGGAATGAGGAAGGGCATTCGTTGCAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGGGACCACTTTCTGCTGAAATAGTTGGAACTTCTTCTGATGGGGGCAAAATAGTTGTTTGTTTTACAGGGAAGGGCACTTCATTCAAAGTAGGTGGATTTTCTCTGAAAGGGGGGAAACTTGTTTTCAGCGAAGGATGAACTGCATTACTTGAAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGCGAGCACTTTCTGCTGAAATTGCTGGAACTTCTTTCGACGGCGCCAAAATACCCGTCTGCTCCACGCGCAGGCCATTCCTTTCCAACCCGATCGATCCTTTCTCAGAGGGTGGACAGCCGGTCTCAGCCGCCGGCACCGCCACGGCCCAGCGGTGGAGCCATTGCGTATGCCGCCCCGCGGCAACACGGCCGGGCCCCGATATATCCTATTTCCCTGTTCCCGGCCGAGCCCCAGCCATCCAGCCCCTGCCCGTCTCAGGCGCGGCCCACCACCCGAGAA] [-] EMBL CF324336 [ GCAAAATAGTTGTTTGTCTTACAGGGAAGGGAATTTCATTCAAAATAGCTGGATTTTCTCTGAGAAGACAGC TTGTTTTCAGGGAATGAGGAAGTGCATTCGTTGCAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGTGACCACTTTCTGCTGAAATAGCTGGAACTTCTTCTGATGGGGGCAGAATAGTTGTTTGTTTTACAGGGAAGGGCATTTCATTCAAAGTAGCTGGATTTTCTCTGAGAGGGGGGAAACTTGTTTTCAGCGAATGATGAACTGCATTACTTGAAAACAAGCTTTCAGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9154#0 GTCCCTATCCCATCCGTCGTCCGTCCCCGTACGTCCGCCACCCAGTCGCCTTCCCCCCTC 60 consensus_9154#1 ------------GAGGGAATTATTTCACTTCCATAGTCCATATATTGACCTTCATCTTTC 48 consensus_9154#2 ----------------------TTTTTTTTTTTTTTTTTTTGAAAAAACTGGAACTTCTT 38 * * * * * * consensus_9154#0 CCTCCGTCTCCACCGCT-TCTCCCGCCGCCTCTTCTCCTCCAACCACCAGANGGCGACCA 119 consensus_9154#1 TA-CTGCTCCTATTGTAATCAATTATTTGCTACTCTATAGGGGATGCCATGCATCATTCA 107 consensus_9154#2 TTAATGGGGGCAAAATA-------GTTGTTTGTCTTACAGGGAAGG--GAATTTCATTCA 89 * * * * * ** consensus_9154#0 CCGCGGCACANA---CAC-AGAGACCCCCANATGCTTCCGTCGACTCCGATCANNAGCGG 175 consensus_9154#1 CCATTTTAGAAAAATCAT-ATTGAGTGGCAAAAGATCTTACCAC-----ATATATAGTGG 161 consensus_9154#2 AAATAGCTGGATTTTCTCTAAAAAAACAGCTTTGTTTTCAGGGA-----ATGAGGAAGGG 144 * * * * * ** * ** consensus_9154#0 --TTNGCCACCAGCCCACCACCAGTGAGTGACGCGACGCGACCGGCGGCGGCGGCGATGG 233 consensus_9154#1 --TGAATAATGGTTACAACAAAGAGCATGGGTACCCTAAAATTAGCCATTTTGTCGATTG 219 consensus_9154#2 CATTCGTTGCAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGGGACCACTTTCTGCTG 204 * * * * * * * consensus_9154#0 GCAGCGTGGACTTCGGCCTCGTCGAGATCCACCCCGGGGAGATCCGGTTCGAATTTGAGG 293 consensus_9154#1 GCA---TATGCTCCAGCTCC-TCCTTGTTGGTTGCGGTCATTGTCAACTTG--TCATATT 273 consensus_9154#2 AAA-----TAGTTGGAACTTCTTCTGATGGGGGCAAAATAGTT---GTTTGTTTTACAGG 256 * * * * * * * * * consensus_9154#0 TGAAGAAGAAAAGTTCATGTTATGTCTGTC-TAGTGAACAAATCAGAGGAATATGTTGCA 352 consensus_9154#1 AAAATTAAAAATAGTCCTCTTATATCTACTGCAGTCATTTACCCTTTGAGAGATTTA--A 331 consensus_9154#2 GAAGGGCACTTCATTCAAAGTAGGTGGATTTTCTCTGAAAGGGGGGAAACTTGTTTT-CA 315 * ** ** * * * * consensus_9154#0 TTCAAGGTCAAAACAACTTCTCCAAAAAGGTATTGTGTTCGACCAAATGTAGGAGTCATT 412 consensus_9154#1 GTGAATGCCAAAATATCTTACCTGCCCAAAGATT-----TGACTAATAGCACCGATTGTT 386 consensus_9154#2 GCGAAGGATGAACTGCATTACTTGAAAACAAGCT----------TTCAGCAGGGGTTTCT 365 ** * ** ** * * * * * * consensus_9154#0 CTTCCAAGGGCAACATGTGTTTTTACAGTTATTATGCAAGCACAAATGATTGCTCCACCA 472 consensus_9154#1 AAACTAATGGGAT----TGCAGTGAATATTCTTAC-CACATGCAACTGTTTGTCTTACAG 441 consensus_9154#2 TTCCAATGGCGAGCACTTTCTGCTGAAATTGCTGG--AACTTCTTTCGACGGCGCCAAAA 423 * * * * * ** * * * * * * consensus_9154#0 GATC---TGCAAATAAGAGACAAGTTT-----CTTGTGCAGACCACAGTTGTTCC-TTTT 523 consensus_9154#1 GACCAAATATGAGCAGAGGACTTCTATATGACCTTATCTATGCTACATTTTTCTAGTTCT 501 consensus_9154#2 TACCCG-TCTGCTCCACGCGCAGGCCA-----TTCCTTTCCAACCCGATCGATCCTTTCT 477 * * * * * * * * ** * consensus_9154#0 GGTACAGCTGACGAAGACATTGCTCCTGCTTTTTTTTCCAAAGAAGTG-GGAAGATATAT 582 consensus_9154#1 TATATAACCATCTGGATGAAATCTTGTACTATCATTTTTGAAGATATA-TATATATATAT 560 consensus_9154#2 CAGAGGGTGGAC-AGCCGGTCTCAGCCGCCGGCACCGCCACGGCCCAGCGGTGGAGCCAT 536 * * * * * * ** consensus_9154#0 CGAGGAGAATAAGCTGAGAGTTGTTCTTGTCAGTGCGACTCAACTTGAAGAACAGCAAC- 641 consensus_9154#1 ------ATATATATATATATATATATATATATATATATATTTATGTGCTGTGCTTTTTT- 613 consensus_9154#2 T-----GCGTATGCCGCCCCGCGGCAACACGGCCGGGCCCCGATATATCCTATTTCCCTG 591 ** * * consensus_9154#0 TCATTGCAGGAGTTCCCAGTGCTAAGACTGGTGTTGAGGTTCGTGTGGCAAAAGAGACAC 701 consensus_9154#1 TCTTTGTTGACAGTTGAGGTGAAGAAGAAAAGTTCATGTTCTGTCTGTCTAGTGAACAAA 673 consensus_9154#2 TTCCCGGCCGAGCCCCAGCCATCCAGCCCCTGCCCGTCTCAGGCGCGGCCCACCACCCGA 651 * * * * * * * consensus_9154#0 TGAATATTGAGAGTGAAGCATCTAATGTCATGAACGAAGTTCATCATTCCTTGAAAACAA 761 consensus_9154#1 TCAGAG--GAATATGTTGCATTCAANGTCA-AAACA------------------------ 706 consensus_9154#2 GAA--------------------------------------------------------- 654 * consensus_9154#0 ACTTCCCCCCTCTGAGAGAAAATCCAGCTACTTTGAACGAAATGCCCTTCCCTGTAAAAC 821 consensus_9154#1 ------------------------------------------------------------ consensus_9154#2 ------------------------------------------------------------ consensus_9154#0 AAACAACTATTCTGGCCCCATCAAAAGAAGTTCCAGCT 859 consensus_9154#1 -------------------------------------- consensus_9154#2 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||