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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 859 fasta sequence
[GTCCCTATCCCATCCGTCGTCCGTCCCCGTACGTCCGCCACCCAGTCGCCTTCCCCCCTCCCTCCGTCTCCACCGCTTCTCCCGCCGCCTCTTCTCCTCCAACCACCAGANGGCGACCACCGCGGCACANACACAGAGACCCCCANATGCTTCCGTCGACTCCGATCANNAGCGGTTNGCCACCAGCCCACCACCAGTGAGTGACGCGACGCGACCGGCGGCGGCGGCGATGGGCAGCGTGGACTTCGGCCTCGTCGAGATCCACCCCGGGGAGATCCGGTTCGAATTTGAGGTGAAGAAGAAAAGTTCATGTTATGTCTGTCTAGTGAACAAATCAGAGGAATATGTTGCATTCAAGGTCAAAACAACTTCTCCAAAAAGGTATTGTGTTCGACCAAATGTAGGAGTCATTCTTCCAAGGGCAACATGTGTTTTTACAGTTATTATGCAAGCACAAATGATTGCTCCACCAGATCTGCAAATAAGAGACAAGTTTCTTGTGCAGACCACAGTTGTTCCTTTTGGTACAGCTGACGAAGACATTGCTCCTGCTTTTTTTTCCAAAGAAGTGGGAAGATATATCGAGGAGAATAAGCTGAGAGTTGTTCTTGTCAGTGCGACTCAACTTGAAGAACAGCAACTCATTGCAGGAGTTCCCAGTGCTAAGACTGGTGTTGAGGTTCGTGTGGCAAAAGAGACACTGAATATTGAGAGTGAAGCATCTAATGTCATGAACGAAGTTCATCATTCCTTGAAAACAAACTTCCCCCCTCTGAGAGAAAATCCAGCTACTTTGAACGAAATGCCCTTCCCTGTAAAACAAACAACTATTCTGGCCCCATCAAAAGAAGTTCCAGCT]
[+] EMBL OSS11952A [GTCCCTATCCCATCCGTCGTCCGTCCCCGTACGTCCGCCACCCAGTCGCCTTCCCCCCTCCCTCCGTCTCCACCGCTTCTCCCGCCGCCTCTTCTCCTCCAACCACCAGANGGCGACCACCGCGGCACANACACAGAGACCCCCANATGCTTCCGTCGACTCCGATCANNAGCGGTTN ]
[+] EMBL AK102012 [ TATCCCATCCGTCGTCCGTCCCCGTACGTCCGCCACCCAGTCGCCTTCCCCCCTCCCTCCGTCTCCACCGCTTCTCCCGCCGCCTCTTCTCCTCCAACCACCAGACGGCGACCACCGCGGCACACACACAGAGACCCCCAGATGCTTCCGCCGACTCCGATCAGCAGCCGCTCGCCACCAGCCCACCACCAGTGAGTGACGCGACGCGACCGGCGGCGGCGGCGATGGGCAGCGTGGACTTCGGCCTCGTCGAGATCCACCCCGGGGAGATCCGGTTCGAATTTGAGGTGAAGAAGAAAAGTTCATGTTATGTCTGTCTAGTGAACAAATCAGAGGAATATGTTGCATTCAAGGTCAAAACAACTTCTCCAAAAAGGTATTGTGTTCGACCAAATGTAGGAGTCATTCTTCCAAGGGCAACATGTGTTTTTACAGTTATTATGCAAGCACAAATGATTGCTCCACCAGATCTGCAAATAAGAGACAAGTTTCTTGTGCAGACCACAGTTGTTCCTTTTGGTACAGCTGACGAAGACATTGCTCCTGCTTTTTTTTCCAAAGAAGTGGGAAGATATATCGAGGAGAATAAGCTGAGAGTTGTTCTTGTCAGTGCGACTCAACTTGAAGAACAGCAACTCATTGCAGGAGTTCCCAGTGCTAAGACTGGTGTTGAGGTTCGTGTGGCAAAAGAGACACTGAATATTGAGAGTGAAGCATCTAATGTCATGAACGAAGTTCATCATTCCTTGAAAACAAACTTCCCCCCTCTGAGAGAAAATCCAGCTACTTTGAACGAAATGCCCTTCCCTGTAAAACAAACAACTATTCTGGCCCCATCAAAAGAAGTTCCAGCT]
consensusID : consensus_9154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence
[GAGGGAATTATTTCACTTCCATAGTCCATATATTGACCTTCATCTTTCTACTGCTCCTATTGTAATCAATTATTTGCTACTCTATAGGGGATGCCATGCATCATTCACCATTTTAGAAAAATCATATTGAGTGGCAAAAGATCTTACCACATATATAGTGGTGAATAATGGTTACAACAAAGAGCATGGGTACCCTAAAATTAGCCATTTTGTCGATTGGCATATGCTCCAGCTCCTCCTTGTTGGTTGCGGTCATTGTCAACTTGTCATATTAAAATTAAAAATAGTCCTCTTATATCTACTGCAGTCATTTACCCTTTGAGAGATTTAAGTGAATGCCAAAATATCTTACCTGCCCAAAGATTTGACTAATAGCACCGATTGTTAAACTAATGGGATTGCAGTGAATATTCTTACCACATGCAACTGTTTGTCTTACAGGACCAAATATGAGCAGAGGACTTCTATATGACCTTATCTATGCTACATTTTTCTAGTTCTTATATAACCATCTGGATGAAATCTTGTACTATCATTTTTGAAGATATATATATATATATATATATATATATATATATATATATATATATATATTTATGTGCTGTGCTTTTTTTCTTTGTTGACAGTTGAGGTGAAGAAGAAAAGTTCATGTTCTGTCTGTCTAGTGAACAAATCAGAGGAATATGTTGCATTCAANGTCAAAACA]
[+] EMBL CB632703 [GAGGGAATTATTTCACTTCCATAGTCCATATATTGACCTTCATCTTTCTACTGCTCCTATTGTAATCAATTATTTGCTACTCTATAGGGGATGCCATGCATCATTCACCATTTTAGAAAAATCATATTGAGTGGCAAAAGATCTTACCACATATATAGTGGTGAATAATGGTTACAACAAAGAGCATGGGTACCCTAAAATTAGCCATTTTGTCGATTGGCATATGCTCCAGCTCCTCCTTGTTGGTTGCGGTCATTGTCAACTTGTCATATTAAAATTAAAAATAGTCCTCTTATATCTACTGCAGTCATTTACCCTTTGAGAGATTTAAGTGAATGCCAAAATATCTTACCTGCCCAAAGATTTGACTAATAGCACCGATTGTTAAACTAATGGGATTGCAGTGAATATTCTTACCACATGCAACTGTTTGTCTTACAGGACCAAATATGAGCAGAGGACTTCTATATGACCTTATCTATGCTACATTTTTCTAGTTCTTATATAACCATCTGGATGAAATCTTGTACTATCATTTTTGAAGATATATATATATATATATATATATATATATATATATATATATATATATATTTATGTGCTGTGCTTTTTTTCTTTGTTGACAGTTGAGGTGAAGAAGAAAAGTTCATGTTCTGTCTGTCTAGTGAACAAATCAGAGGAATATGTTGCATTCAANGTCAAAACA]
consensusID : consensus_9154#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 654 fasta sequence
[TTTTTTTTTTTTTTTTTTTGAAAAAACTGGAACTTCTTTTAATGGGGGCAAAATAGTTGTTTGTCTTACAGGGAAGGGAATTTCATTCAAAATAGCTGGATTTTCTCTAAAAAAACAGCTTTGTTTTCAGGGAATGAGGAAGGGCATTCGTTGCAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGGGACCACTTTCTGCTGAAATAGTTGGAACTTCTTCTGATGGGGGCAAAATAGTTGTTTGTTTTACAGGGAAGGGCACTTCATTCAAAGTAGGTGGATTTTCTCTGAAAGGGGGGAAACTTGTTTTCAGCGAAGGATGAACTGCATTACTTGAAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGCGAGCACTTTCTGCTGAAATTGCTGGAACTTCTTTCGACGGCGCCAAAATACCCGTCTGCTCCACGCGCAGGCCATTCCTTTCCAACCCGATCGATCCTTTCTCAGAGGGTGGACAGCCGGTCTCAGCCGCCGGCACCGCCACGGCCCAGCGGTGGAGCCATTGCGTATGCCGCCCCGCGGCAACACGGCCGGGCCCCGATATATCCTATTTCCCTGTTCCCGGCCGAGCCCCAGCCATCCAGCCCCTGCCCGTCTCAGGCGCGGCCCACCACCCGAGAA]
[+] EMBL CA759965 [TTTTTTTTTTTTTTTTTTTGAAAAAACTGGAACTTCTTTTAATGGGGGCAAAATAGTTGTTTGTCTTACAGGGAAGGGAATTTCATTCAAAATAGCTGGATTTTCTCTAAAAAAACAGCTTTGTTTTCAGGGAATGAGGAAGGGCATTCGTTGCAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGGGACCACTTTCTGCTGAAATAGTTGGAACTTCTTCTGATGGGGGCAAAATAGTTGTTTGTTTTACAGGGAAGGGCACTTCATTCAAAGTAGGTGGATTTTCTCTGAAAGGGGGGAAACTTGTTTTCAGCGAAGGATGAACTGCATTACTTGAAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGCGAGCACTTTCTGCTGAAATTGCTGGAACTTCTTTCGACGGCGCCAAAATACCCGTCTGCTCCACGCGCAGGCCATTCCTTTCCAACCCGATCGATCCTTTCTCAGAGGGTGGACAGCCGGTCTCAGCCGCCGGCACCGCCACGGCCCAGCGGTGGAGCCATTGCGTATGCCGCCCCGCGGCAACACGGCCGGGCCCCGATATATCCTATTTCCCTGTTCCCGGCCGAGCCCCAGCCATCCAGCCCCTGCCCGTCTCAGGCGCGGCCCACCACCCGAGAA]
[-] EMBL CF324336 [ GCAAAATAGTTGTTTGTCTTACAGGGAAGGGAATTTCATTCAAAATAGCTGGATTTTCTCTGAGAAGACAGC TTGTTTTCAGGGAATGAGGAAGTGCATTCGTTGCAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGTGACCACTTTCTGCTGAAATAGCTGGAACTTCTTCTGATGGGGGCAGAATAGTTGTTTGTTTTACAGGGAAGGGCATTTCATTCAAAGTAGCTGGATTTTCTCTGAGAGGGGGGAAACTTGTTTTCAGCGAATGATGAACTGCATTACTTGAAAACAAGCTTTCAGCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9154#0 GTCCCTATCCCATCCGTCGTCCGTCCCCGTACGTCCGCCACCCAGTCGCCTTCCCCCCTC 60
consensus_9154#1 ------------GAGGGAATTATTTCACTTCCATAGTCCATATATTGACCTTCATCTTTC 48
consensus_9154#2 ----------------------TTTTTTTTTTTTTTTTTTTGAAAAAACTGGAACTTCTT 38
* * * * * *
consensus_9154#0 CCTCCGTCTCCACCGCT-TCTCCCGCCGCCTCTTCTCCTCCAACCACCAGANGGCGACCA 119
consensus_9154#1 TA-CTGCTCCTATTGTAATCAATTATTTGCTACTCTATAGGGGATGCCATGCATCATTCA 107
consensus_9154#2 TTAATGGGGGCAAAATA-------GTTGTTTGTCTTACAGGGAAGG--GAATTTCATTCA 89
* * * * * **
consensus_9154#0 CCGCGGCACANA---CAC-AGAGACCCCCANATGCTTCCGTCGACTCCGATCANNAGCGG 175
consensus_9154#1 CCATTTTAGAAAAATCAT-ATTGAGTGGCAAAAGATCTTACCAC-----ATATATAGTGG 161
consensus_9154#2 AAATAGCTGGATTTTCTCTAAAAAAACAGCTTTGTTTTCAGGGA-----ATGAGGAAGGG 144
* * * * * ** * **
consensus_9154#0 --TTNGCCACCAGCCCACCACCAGTGAGTGACGCGACGCGACCGGCGGCGGCGGCGATGG 233
consensus_9154#1 --TGAATAATGGTTACAACAAAGAGCATGGGTACCCTAAAATTAGCCATTTTGTCGATTG 219
consensus_9154#2 CATTCGTTGCAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGGGACCACTTTCTGCTG 204
* * * * * * *
consensus_9154#0 GCAGCGTGGACTTCGGCCTCGTCGAGATCCACCCCGGGGAGATCCGGTTCGAATTTGAGG 293
consensus_9154#1 GCA---TATGCTCCAGCTCC-TCCTTGTTGGTTGCGGTCATTGTCAACTTG--TCATATT 273
consensus_9154#2 AAA-----TAGTTGGAACTTCTTCTGATGGGGGCAAAATAGTT---GTTTGTTTTACAGG 256
* * * * * * * * *
consensus_9154#0 TGAAGAAGAAAAGTTCATGTTATGTCTGTC-TAGTGAACAAATCAGAGGAATATGTTGCA 352
consensus_9154#1 AAAATTAAAAATAGTCCTCTTATATCTACTGCAGTCATTTACCCTTTGAGAGATTTA--A 331
consensus_9154#2 GAAGGGCACTTCATTCAAAGTAGGTGGATTTTCTCTGAAAGGGGGGAAACTTGTTTT-CA 315
* ** ** * * * *
consensus_9154#0 TTCAAGGTCAAAACAACTTCTCCAAAAAGGTATTGTGTTCGACCAAATGTAGGAGTCATT 412
consensus_9154#1 GTGAATGCCAAAATATCTTACCTGCCCAAAGATT-----TGACTAATAGCACCGATTGTT 386
consensus_9154#2 GCGAAGGATGAACTGCATTACTTGAAAACAAGCT----------TTCAGCAGGGGTTTCT 365
** * ** ** * * * * * *
consensus_9154#0 CTTCCAAGGGCAACATGTGTTTTTACAGTTATTATGCAAGCACAAATGATTGCTCCACCA 472
consensus_9154#1 AAACTAATGGGAT----TGCAGTGAATATTCTTAC-CACATGCAACTGTTTGTCTTACAG 441
consensus_9154#2 TTCCAATGGCGAGCACTTTCTGCTGAAATTGCTGG--AACTTCTTTCGACGGCGCCAAAA 423
* * * * * ** * * * * * *
consensus_9154#0 GATC---TGCAAATAAGAGACAAGTTT-----CTTGTGCAGACCACAGTTGTTCC-TTTT 523
consensus_9154#1 GACCAAATATGAGCAGAGGACTTCTATATGACCTTATCTATGCTACATTTTTCTAGTTCT 501
consensus_9154#2 TACCCG-TCTGCTCCACGCGCAGGCCA-----TTCCTTTCCAACCCGATCGATCCTTTCT 477
* * * * * * * * ** *
consensus_9154#0 GGTACAGCTGACGAAGACATTGCTCCTGCTTTTTTTTCCAAAGAAGTG-GGAAGATATAT 582
consensus_9154#1 TATATAACCATCTGGATGAAATCTTGTACTATCATTTTTGAAGATATA-TATATATATAT 560
consensus_9154#2 CAGAGGGTGGAC-AGCCGGTCTCAGCCGCCGGCACCGCCACGGCCCAGCGGTGGAGCCAT 536
* * * * * * **
consensus_9154#0 CGAGGAGAATAAGCTGAGAGTTGTTCTTGTCAGTGCGACTCAACTTGAAGAACAGCAAC- 641
consensus_9154#1 ------ATATATATATATATATATATATATATATATATATTTATGTGCTGTGCTTTTTT- 613
consensus_9154#2 T-----GCGTATGCCGCCCCGCGGCAACACGGCCGGGCCCCGATATATCCTATTTCCCTG 591
** * *
consensus_9154#0 TCATTGCAGGAGTTCCCAGTGCTAAGACTGGTGTTGAGGTTCGTGTGGCAAAAGAGACAC 701
consensus_9154#1 TCTTTGTTGACAGTTGAGGTGAAGAAGAAAAGTTCATGTTCTGTCTGTCTAGTGAACAAA 673
consensus_9154#2 TTCCCGGCCGAGCCCCAGCCATCCAGCCCCTGCCCGTCTCAGGCGCGGCCCACCACCCGA 651
* * * * * * *
consensus_9154#0 TGAATATTGAGAGTGAAGCATCTAATGTCATGAACGAAGTTCATCATTCCTTGAAAACAA 761
consensus_9154#1 TCAGAG--GAATATGTTGCATTCAANGTCA-AAACA------------------------ 706
consensus_9154#2 GAA--------------------------------------------------------- 654
*
consensus_9154#0 ACTTCCCCCCTCTGAGAGAAAATCCAGCTACTTTGAACGAAATGCCCTTCCCTGTAAAAC 821
consensus_9154#1 ------------------------------------------------------------
consensus_9154#2 ------------------------------------------------------------
consensus_9154#0 AAACAACTATTCTGGCCCCATCAAAAGAAGTTCCAGCT 859
consensus_9154#1 --------------------------------------
consensus_9154#2 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||