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Oryza sativa
cluster # 9154 cluster # 9154       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9154#0 length = 859 sequences # 2  
consensus_9154#1 length = 706 sequences # 1  
consensus_9154#2 length = 654 sequences # 2  

consensusID : consensus_9154#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 859
fasta sequence
                              [GTCCCTATCCCATCCGTCGTCCGTCCCCGTACGTCCGCCACCCAGTCGCCTTCCCCCCTCCCTCCGTCTCCACCGCTTCTCCCGCCGCCTCTTCTCCTCCAACCACCAGANGGCGACCACCGCGGCACANACACAGAGACCCCCANATGCTTCCGTCGACTCCGATCANNAGCGGTTNGCCACCAGCCCACCACCAGTGAGTGACGCGACGCGACCGGCGGCGGCGGCGATGGGCAGCGTGGACTTCGGCCTCGTCGAGATCCACCCCGGGGAGATCCGGTTCGAATTTGAGGTGAAGAAGAAAAGTTCATGTTATGTCTGTCTAGTGAACAAATCAGAGGAATATGTTGCATTCAAGGTCAAAACAACTTCTCCAAAAAGGTATTGTGTTCGACCAAATGTAGGAGTCATTCTTCCAAGGGCAACATGTGTTTTTACAGTTATTATGCAAGCACAAATGATTGCTCCACCAGATCTGCAAATAAGAGACAAGTTTCTTGTGCAGACCACAGTTGTTCCTTTTGGTACAGCTGACGAAGACATTGCTCCTGCTTTTTTTTCCAAAGAAGTGGGAAGATATATCGAGGAGAATAAGCTGAGAGTTGTTCTTGTCAGTGCGACTCAACTTGAAGAACAGCAACTCATTGCAGGAGTTCCCAGTGCTAAGACTGGTGTTGAGGTTCGTGTGGCAAAAGAGACACTGAATATTGAGAGTGAAGCATCTAATGTCATGAACGAAGTTCATCATTCCTTGAAAACAAACTTCCCCCCTCTGAGAGAAAATCCAGCTACTTTGAACGAAATGCCCTTCCCTGTAAAACAAACAACTATTCTGGCCCCATCAAAAGAAGTTCCAGCT]

[+] EMBL OSS11952A            [GTCCCTATCCCATCCGTCGTCCGTCCCCGTACGTCCGCCACCCAGTCGCCTTCCCCCCTCCCTCCGTCTCCACCGCTTCTCCCGCCGCCTCTTCTCCTCCAACCACCAGANGGCGACCACCGCGGCACANACACAGAGACCCCCANATGCTTCCGTCGACTCCGATCANNAGCGGTTN                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AK102012             [     TATCCCATCCGTCGTCCGTCCCCGTACGTCCGCCACCCAGTCGCCTTCCCCCCTCCCTCCGTCTCCACCGCTTCTCCCGCCGCCTCTTCTCCTCCAACCACCAGACGGCGACCACCGCGGCACACACACAGAGACCCCCAGATGCTTCCGCCGACTCCGATCAGCAGCCGCTCGCCACCAGCCCACCACCAGTGAGTGACGCGACGCGACCGGCGGCGGCGGCGATGGGCAGCGTGGACTTCGGCCTCGTCGAGATCCACCCCGGGGAGATCCGGTTCGAATTTGAGGTGAAGAAGAAAAGTTCATGTTATGTCTGTCTAGTGAACAAATCAGAGGAATATGTTGCATTCAAGGTCAAAACAACTTCTCCAAAAAGGTATTGTGTTCGACCAAATGTAGGAGTCATTCTTCCAAGGGCAACATGTGTTTTTACAGTTATTATGCAAGCACAAATGATTGCTCCACCAGATCTGCAAATAAGAGACAAGTTTCTTGTGCAGACCACAGTTGTTCCTTTTGGTACAGCTGACGAAGACATTGCTCCTGCTTTTTTTTCCAAAGAAGTGGGAAGATATATCGAGGAGAATAAGCTGAGAGTTGTTCTTGTCAGTGCGACTCAACTTGAAGAACAGCAACTCATTGCAGGAGTTCCCAGTGCTAAGACTGGTGTTGAGGTTCGTGTGGCAAAAGAGACACTGAATATTGAGAGTGAAGCATCTAATGTCATGAACGAAGTTCATCATTCCTTGAAAACAAACTTCCCCCCTCTGAGAGAAAATCCAGCTACTTTGAACGAAATGCCCTTCCCTGTAAAACAAACAACTATTCTGGCCCCATCAAAAGAAGTTCCAGCT]


>consensus_9154#0 GTCCCTATCCCATCCGTCGTCCGTCCCCGTACGTCCGCCACCCAGTCGCCTTCCCCCCTC CCTCCGTCTCCACCGCTTCTCCCGCCGCCTCTTCTCCTCCAACCACCAGANGGCGACCAC CGCGGCACANACACAGAGACCCCCANATGCTTCCGTCGACTCCGATCANNAGCGGTTNGC CACCAGCCCACCACCAGTGAGTGACGCGACGCGACCGGCGGCGGCGGCGATGGGCAGCGT GGACTTCGGCCTCGTCGAGATCCACCCCGGGGAGATCCGGTTCGAATTTGAGGTGAAGAA GAAAAGTTCATGTTATGTCTGTCTAGTGAACAAATCAGAGGAATATGTTGCATTCAAGGT CAAAACAACTTCTCCAAAAAGGTATTGTGTTCGACCAAATGTAGGAGTCATTCTTCCAAG GGCAACATGTGTTTTTACAGTTATTATGCAAGCACAAATGATTGCTCCACCAGATCTGCA AATAAGAGACAAGTTTCTTGTGCAGACCACAGTTGTTCCTTTTGGTACAGCTGACGAAGA CATTGCTCCTGCTTTTTTTTCCAAAGAAGTGGGAAGATATATCGAGGAGAATAAGCTGAG AGTTGTTCTTGTCAGTGCGACTCAACTTGAAGAACAGCAACTCATTGCAGGAGTTCCCAG TGCTAAGACTGGTGTTGAGGTTCGTGTGGCAAAAGAGACACTGAATATTGAGAGTGAAGC ATCTAATGTCATGAACGAAGTTCATCATTCCTTGAAAACAAACTTCCCCCCTCTGAGAGA AAATCCAGCTACTTTGAACGAAATGCCCTTCCCTGTAAAACAAACAACTATTCTGGCCCC ATCAAAAGAAGTTCCAGCT



consensusID : consensus_9154#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence
                              [GAGGGAATTATTTCACTTCCATAGTCCATATATTGACCTTCATCTTTCTACTGCTCCTATTGTAATCAATTATTTGCTACTCTATAGGGGATGCCATGCATCATTCACCATTTTAGAAAAATCATATTGAGTGGCAAAAGATCTTACCACATATATAGTGGTGAATAATGGTTACAACAAAGAGCATGGGTACCCTAAAATTAGCCATTTTGTCGATTGGCATATGCTCCAGCTCCTCCTTGTTGGTTGCGGTCATTGTCAACTTGTCATATTAAAATTAAAAATAGTCCTCTTATATCTACTGCAGTCATTTACCCTTTGAGAGATTTAAGTGAATGCCAAAATATCTTACCTGCCCAAAGATTTGACTAATAGCACCGATTGTTAAACTAATGGGATTGCAGTGAATATTCTTACCACATGCAACTGTTTGTCTTACAGGACCAAATATGAGCAGAGGACTTCTATATGACCTTATCTATGCTACATTTTTCTAGTTCTTATATAACCATCTGGATGAAATCTTGTACTATCATTTTTGAAGATATATATATATATATATATATATATATATATATATATATATATATATATTTATGTGCTGTGCTTTTTTTCTTTGTTGACAGTTGAGGTGAAGAAGAAAAGTTCATGTTCTGTCTGTCTAGTGAACAAATCAGAGGAATATGTTGCATTCAANGTCAAAACA]

[+] EMBL CB632703             [GAGGGAATTATTTCACTTCCATAGTCCATATATTGACCTTCATCTTTCTACTGCTCCTATTGTAATCAATTATTTGCTACTCTATAGGGGATGCCATGCATCATTCACCATTTTAGAAAAATCATATTGAGTGGCAAAAGATCTTACCACATATATAGTGGTGAATAATGGTTACAACAAAGAGCATGGGTACCCTAAAATTAGCCATTTTGTCGATTGGCATATGCTCCAGCTCCTCCTTGTTGGTTGCGGTCATTGTCAACTTGTCATATTAAAATTAAAAATAGTCCTCTTATATCTACTGCAGTCATTTACCCTTTGAGAGATTTAAGTGAATGCCAAAATATCTTACCTGCCCAAAGATTTGACTAATAGCACCGATTGTTAAACTAATGGGATTGCAGTGAATATTCTTACCACATGCAACTGTTTGTCTTACAGGACCAAATATGAGCAGAGGACTTCTATATGACCTTATCTATGCTACATTTTTCTAGTTCTTATATAACCATCTGGATGAAATCTTGTACTATCATTTTTGAAGATATATATATATATATATATATATATATATATATATATATATATATATATTTATGTGCTGTGCTTTTTTTCTTTGTTGACAGTTGAGGTGAAGAAGAAAAGTTCATGTTCTGTCTGTCTAGTGAACAAATCAGAGGAATATGTTGCATTCAANGTCAAAACA]


>consensus_9154#1 GAGGGAATTATTTCACTTCCATAGTCCATATATTGACCTTCATCTTTCTACTGCTCCTAT TGTAATCAATTATTTGCTACTCTATAGGGGATGCCATGCATCATTCACCATTTTAGAAAA ATCATATTGAGTGGCAAAAGATCTTACCACATATATAGTGGTGAATAATGGTTACAACAA AGAGCATGGGTACCCTAAAATTAGCCATTTTGTCGATTGGCATATGCTCCAGCTCCTCCT TGTTGGTTGCGGTCATTGTCAACTTGTCATATTAAAATTAAAAATAGTCCTCTTATATCT ACTGCAGTCATTTACCCTTTGAGAGATTTAAGTGAATGCCAAAATATCTTACCTGCCCAA AGATTTGACTAATAGCACCGATTGTTAAACTAATGGGATTGCAGTGAATATTCTTACCAC ATGCAACTGTTTGTCTTACAGGACCAAATATGAGCAGAGGACTTCTATATGACCTTATCT ATGCTACATTTTTCTAGTTCTTATATAACCATCTGGATGAAATCTTGTACTATCATTTTT GAAGATATATATATATATATATATATATATATATATATATATATATATATATATTTATGT GCTGTGCTTTTTTTCTTTGTTGACAGTTGAGGTGAAGAAGAAAAGTTCATGTTCTGTCTG TCTAGTGAACAAATCAGAGGAATATGTTGCATTCAANGTCAAAACA



consensusID : consensus_9154#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 654
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTGAAAAAACTGGAACTTCTTTTAATGGGGGCAAAATAGTTGTTTGTCTTACAGGGAAGGGAATTTCATTCAAAATAGCTGGATTTTCTCTAAAAAAACAGCTTTGTTTTCAGGGAATGAGGAAGGGCATTCGTTGCAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGGGACCACTTTCTGCTGAAATAGTTGGAACTTCTTCTGATGGGGGCAAAATAGTTGTTTGTTTTACAGGGAAGGGCACTTCATTCAAAGTAGGTGGATTTTCTCTGAAAGGGGGGAAACTTGTTTTCAGCGAAGGATGAACTGCATTACTTGAAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGCGAGCACTTTCTGCTGAAATTGCTGGAACTTCTTTCGACGGCGCCAAAATACCCGTCTGCTCCACGCGCAGGCCATTCCTTTCCAACCCGATCGATCCTTTCTCAGAGGGTGGACAGCCGGTCTCAGCCGCCGGCACCGCCACGGCCCAGCGGTGGAGCCATTGCGTATGCCGCCCCGCGGCAACACGGCCGGGCCCCGATATATCCTATTTCCCTGTTCCCGGCCGAGCCCCAGCCATCCAGCCCCTGCCCGTCTCAGGCGCGGCCCACCACCCGAGAA]

[+] EMBL CA759965             [TTTTTTTTTTTTTTTTTTTGAAAAAACTGGAACTTCTTTTAATGGGGGCAAAATAGTTGTTTGTCTTACAGGGAAGGGAATTTCATTCAAAATAGCTGGATTTTCTCTAAAAAAACAGCTTTGTTTTCAGGGAATGAGGAAGGGCATTCGTTGCAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGGGACCACTTTCTGCTGAAATAGTTGGAACTTCTTCTGATGGGGGCAAAATAGTTGTTTGTTTTACAGGGAAGGGCACTTCATTCAAAGTAGGTGGATTTTCTCTGAAAGGGGGGAAACTTGTTTTCAGCGAAGGATGAACTGCATTACTTGAAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGCGAGCACTTTCTGCTGAAATTGCTGGAACTTCTTTCGACGGCGCCAAAATACCCGTCTGCTCCACGCGCAGGCCATTCCTTTCCAACCCGATCGATCCTTTCTCAGAGGGTGGACAGCCGGTCTCAGCCGCCGGCACCGCCACGGCCCAGCGGTGGAGCCATTGCGTATGCCGCCCCGCGGCAACACGGCCGGGCCCCGATATATCCTATTTCCCTGTTCCCGGCCGAGCCCCAGCCATCCAGCCCCTGCCCGTCTCAGGCGCGGCCCACCACCCGAGAA]
[-] EMBL CF324336             [                                               GCAAAATAGTTGTTTGTCTTACAGGGAAGGGAATTTCATTCAAAATAGCTGGATTTTCTCTGAGAAGACAGC TTGTTTTCAGGGAATGAGGAAGTGCATTCGTTGCAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGTGACCACTTTCTGCTGAAATAGCTGGAACTTCTTCTGATGGGGGCAGAATAGTTGTTTGTTTTACAGGGAAGGGCATTTCATTCAAAGTAGCTGGATTTTCTCTGAGAGGGGGGAAACTTGTTTTCAGCGAATGATGAACTGCATTACTTGAAAACAAGCTTTCAGCA                                                                                                                                                                                                                                                                                                          ]


>consensus_9154#2 TTTTTTTTTTTTTTTTTTTGAAAAAACTGGAACTTCTTTTAATGGGGGCAAAATAGTTGT TTGTCTTACAGGGAAGGGAATTTCATTCAAAATAGCTGGATTTTCTCTAAAAAAACAGCT TTGTTTTCAGGGAATGAGGAAGGGCATTCGTTGCAAACAAGCTTTCAGCAGGGGTTTCTT TCCAATGGGGACCACTTTCTGCTGAAATAGTTGGAACTTCTTCTGATGGGGGCAAAATAG TTGTTTGTTTTACAGGGAAGGGCACTTCATTCAAAGTAGGTGGATTTTCTCTGAAAGGGG GGAAACTTGTTTTCAGCGAAGGATGAACTGCATTACTTGAAAACAAGCTTTCAGCAGGGG TTTCTTTCCAATGGCGAGCACTTTCTGCTGAAATTGCTGGAACTTCTTTCGACGGCGCCA AAATACCCGTCTGCTCCACGCGCAGGCCATTCCTTTCCAACCCGATCGATCCTTTCTCAG AGGGTGGACAGCCGGTCTCAGCCGCCGGCACCGCCACGGCCCAGCGGTGGAGCCATTGCG TATGCCGCCCCGCGGCAACACGGCCGGGCCCCGATATATCCTATTTCCCTGTTCCCGGCC GAGCCCCAGCCATCCAGCCCCTGCCCGTCTCAGGCGCGGCCCACCACCCGAGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9154#0      GTCCCTATCCCATCCGTCGTCCGTCCCCGTACGTCCGCCACCCAGTCGCCTTCCCCCCTC 60
consensus_9154#1      ------------GAGGGAATTATTTCACTTCCATAGTCCATATATTGACCTTCATCTTTC 48
consensus_9154#2      ----------------------TTTTTTTTTTTTTTTTTTTGAAAAAACTGGAACTTCTT 38
                                             *     *   *         *    *         * 

consensus_9154#0      CCTCCGTCTCCACCGCT-TCTCCCGCCGCCTCTTCTCCTCCAACCACCAGANGGCGACCA 119
consensus_9154#1      TA-CTGCTCCTATTGTAATCAATTATTTGCTACTCTATAGGGGATGCCATGCATCATTCA 107
consensus_9154#2      TTAATGGGGGCAAAATA-------GTTGTTTGTCTTACAGGGAAGG--GAATTTCATTCA 89
                           *     *                  *    *                  *   **

consensus_9154#0      CCGCGGCACANA---CAC-AGAGACCCCCANATGCTTCCGTCGACTCCGATCANNAGCGG 175
consensus_9154#1      CCATTTTAGAAAAATCAT-ATTGAGTGGCAAAAGATCTTACCAC-----ATATATAGTGG 161
consensus_9154#2      AAATAGCTGGATTTTCTCTAAAAAAACAGCTTTGTTTTCAGGGA-----ATGAGGAAGGG 144
                                     *   *   *         * *             **    *  **

consensus_9154#0      --TTNGCCACCAGCCCACCACCAGTGAGTGACGCGACGCGACCGGCGGCGGCGGCGATGG 233
consensus_9154#1      --TGAATAATGGTTACAACAAAGAGCATGGGTACCCTAAAATTAGCCATTTTGTCGATTG 219
consensus_9154#2      CATTCGTTGCAAACAAGCTTTCAGCAGGGGTTTCTTTCCAATGGGGACCACTTTCTGCTG 204
                        *                          *   *      *   *         *    *

consensus_9154#0      GCAGCGTGGACTTCGGCCTCGTCGAGATCCACCCCGGGGAGATCCGGTTCGAATTTGAGG 293
consensus_9154#1      GCA---TATGCTCCAGCTCC-TCCTTGTTGGTTGCGGTCATTGTCAACTTG--TCATATT 273
consensus_9154#2      AAA-----TAGTTGGAACTTCTTCTGATGGGGGCAAAATAGTT---GTTTGTTTTACAGG 256
                        *        *         *     *           *        * *  *   *  

consensus_9154#0      TGAAGAAGAAAAGTTCATGTTATGTCTGTC-TAGTGAACAAATCAGAGGAATATGTTGCA 352
consensus_9154#1      AAAATTAAAAATAGTCCTCTTATATCTACTGCAGTCATTTACCCTTTGAGAGATTTA--A 331
consensus_9154#2      GAAGGGCACTTCATTCAAAGTAGGTGGATTTTCTCTGAAAGGGGGGAAACTTGTTTT-CA 315
                        *           **    **  *                            * *   *

consensus_9154#0      TTCAAGGTCAAAACAACTTCTCCAAAAAGGTATTGTGTTCGACCAAATGTAGGAGTCATT 412
consensus_9154#1      GTGAATGCCAAAATATCTTACCTGCCCAAAGATT-----TGACTAATAGCACCGATTGTT 386
consensus_9154#2      GCGAAGGATGAACTGCATTACTTGAAAACAAGCT----------TTCAGCAGGGGTTTCT 365
                         ** *   **     **        *     *              * *    *   *

consensus_9154#0      CTTCCAAGGGCAACATGTGTTTTTACAGTTATTATGCAAGCACAAATGATTGCTCCACCA 472
consensus_9154#1      AAACTAATGGGAT----TGCAGTGAATATTCTTAC-CACATGCAACTGTTTGTCTTACAG 441
consensus_9154#2      TTCCAATGGCGAGCACTTTCTGCTGAAATTGCTGG--AACTTCTTTCGACGGCGCCAAAA 423
                         * *  *  *     *          **  *    *    *    *   *    *   

consensus_9154#0      GATC---TGCAAATAAGAGACAAGTTT-----CTTGTGCAGACCACAGTTGTTCC-TTTT 523
consensus_9154#1      GACCAAATATGAGCAGAGGACTTCTATATGACCTTATCTATGCTACATTTTTCTAGTTCT 501
consensus_9154#2      TACCCG-TCTGCTCCACGCGCAGGCCA-----TTCCTTTCCAACCCGATCGATCCTTTCT 477
                       * *   *            *            *  *        *  *       ** *

consensus_9154#0      GGTACAGCTGACGAAGACATTGCTCCTGCTTTTTTTTCCAAAGAAGTG-GGAAGATATAT 582
consensus_9154#1      TATATAACCATCTGGATGAAATCTTGTACTATCATTTTTGAAGATATA-TATATATATAT 560
consensus_9154#2      CAGAGGGTGGAC-AGCCGGTCTCAGCCGCCGGCACCGCCACGGCCCAGCGGTGGAGCCAT 536
                         *       *          *     *             *           *   **

consensus_9154#0      CGAGGAGAATAAGCTGAGAGTTGTTCTTGTCAGTGCGACTCAACTTGAAGAACAGCAAC- 641
consensus_9154#1      ------ATATATATATATATATATATATATATATATATATTTATGTGCTGTGCTTTTTT- 613
consensus_9154#2      T-----GCGTATGCCGCCCCGCGGCAACACGGCCGGGCCCCGATATATCCTATTTCCCTG 591
                               **                               *  *              

consensus_9154#0      TCATTGCAGGAGTTCCCAGTGCTAAGACTGGTGTTGAGGTTCGTGTGGCAAAAGAGACAC 701
consensus_9154#1      TCTTTGTTGACAGTTGAGGTGAAGAAGAAAAGTTCATGTTCTGTCTGTCTAGTGAACAAA 673
consensus_9154#2      TTCCCGGCCGAGCCCCAGCCATCCAGCCCCTGCCCGTCTCAGGCGCGGCCCACCACCCGA 651
                      *    *                  *                 *   * *     *     

consensus_9154#0      TGAATATTGAGAGTGAAGCATCTAATGTCATGAACGAAGTTCATCATTCCTTGAAAACAA 761
consensus_9154#1      TCAGAG--GAATATGTTGCATTCAANGTCA-AAACA------------------------ 706
consensus_9154#2      GAA--------------------------------------------------------- 654
                        *                                                         

consensus_9154#0      ACTTCCCCCCTCTGAGAGAAAATCCAGCTACTTTGAACGAAATGCCCTTCCCTGTAAAAC 821
consensus_9154#1      ------------------------------------------------------------
consensus_9154#2      ------------------------------------------------------------
                                                                                  

consensus_9154#0      AAACAACTATTCTGGCCCCATCAAAAGAAGTTCCAGCT 859
consensus_9154#1      --------------------------------------
consensus_9154#2      --------------------------------------
                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)