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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1660 fasta sequence
[CCTTATCCCCGAAATTTTTGGATCATCCACTCAGCCGGCGAACGCCTCACCCTGCCGTCAAGATGGCCAGACCAGCTGGGATGCGGTGAAGAAGGAGCGGCTAGTGCAGTCAGCACAGCTAGGGGTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCGCCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGGCAGCCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGCCTGCCGCAGCGCCGTCCACCCCTCCCGCCATCGGCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCAGCGCCGGT-GGCACCAGGAGAGCCGCGACAGGTCCGGGGCATCAGGCATGGCTTCCTCCTCCTTGCTCATCACGGACCAGCGCTGTATCGGTGAGACCTGGCGGCTGGAGGCTGGCCGTCCCTGTGCTATGCGTGGATTCCAGGCAGATTTGGCGCTGATGGCTGACATTGCCTGCGCAGGGCCACACCTGCTGCTCGTCAATTTCTTCCCTATCTACAAGCTGGGTCCTCACCAACACCTGCGACACTTCTCATGTTGGTCCCTAGCTCTGCTCTCCTTTATCTCCTCTCTTTCAATTGAAGGGGTGGGTACCAGCAACCTTCTTCTTGCCAGTAAAACAAATAGATTTTTCCTCTTCGATTGTGCGGTCTTAATTTGCAACAGTATTTTTTTATTTTATTTTTTTTTGCATTTGCTCATTGATTTTGTTGTAGATTGCCGGCACCCAAAGACAGCCGAGGACTTCCTGAAGCTGAGCCCCGGCCGCAAGGTTAATTTTTCTCTAGACGCATCTTGATTGGTATATGTATTCGTGTTAATCCTGAGTAACATGACCACAGAAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCACTATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAACAACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATATGTTCTTTAGGTTATTTTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGACAAATACATGTATGAAATTTTAGGTTTTTTGCTGTGCCAAAGGAATAAGATGAAGTTTCTGAAATTTGATATCCACTGACACCCTGCTGAAATCAAACATGGCACTATTATTATAGCAGCAACCGCTGACTGCTCACTCAAACACATCAAATCCTCAAACCTCAGCTGCGATGCTAGCTCATGGAGCTTGAGACCGTGTGTTCTGCATGCAGAGTACTCGAGCATATTGTAATTTTGGTGCAGTACTACAGTGGCATGGAAACAATGTGCCGGCGTCCCTTAGTCATGGCTCTGCCCAGCCAACCCGACGAAGTGGTCATATGCTTAGTGTGTAAAAATTTTATTGTTCGCAGTGTTTGTGTAGTTTAGCTTGTAATTCAATGTGATAATCGTCAGTAAAAACTTTATCTATCGATGTATTATTGCGGTGAAAGTTTGACCTCAATCTTTTCACCCCAATAAAATAGAGTAAATAAATTACTCAAAAAAAAAAAAAAAAAAAAAAAAATTCGAGACTAGTT]
[+] EMBL AK071424 [CCTTATCCCCGAAATTTTTGGATCATCCACTCAGCCGGCGAACGCCTCACCCTGCCGTCAAGATGGCCAGACCAGCTGGGATGCGGTGAAGAAGGAGCGGCTAGTGCAGTCAGCACAGCTAGGGGTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCGCCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGGCAGCCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGCCTGCCGCAGCGCCGTCCACCCCTCCCGCCATCGGCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCAGCGCCGGT GGCACCAGGAGAGCCGCGACAGGTCCGGGGCATCAGGCATGGCTTCCTCCTCCTTGCTCATCACGGACCAGCGCTGTATCGGTGAGACCTGGCGGCTGGAGGCTGGCCGTCCCTGTGCTATGCGTGGATTCCAGGCAGATTTGGCGCTGATGGCTGACATTGCCTGCGCAGGGCCACACCTGCTGCTCGTCAATTTCTTCCCTATCTACAAGCTGGGTCCTCACCAACACCTGCGACACTTCTCATGTTGGTCCCTAGCTCTGCTCTCCTTTATCTCCTCTCTTTCAATTGAAGGGGTGGGTACCAGCAACCTTCTTCTTGCCAGTAAAACAAATAGATTTTTCCTCTTCGATTGTGCGGTCTTAATTTGCAACAGTATTTTTTTATTTTATTTTTTTTTGCATTTGCTCATTGATTTTGTTGTAGATTGCCGGCACCCAAAGACAGCCGAGGACTTCCTGAAGCTGAGCCCCGGCCGCAAGGTTAATTTTTCTCTAGACGCATCTTGATTGGTATATGTATTCGTGTTAATCCTGAGTAACATGACCACAGAAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCACTATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAACAACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATATGTTCTTTAGGTTATTTTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGACAAATACATGTATGAAATTTTAGGTTTTTTGCTGTGCCAAAGGAATAAGATGAAGTTTCTGAAATTTGATATCCACTGACACCCTGCTGAAATCAAACATGGCACTATTATTATAGCAGCAACCGCTGACTGCTCACTCAAACACATCAAATCCTCAAACCTCAGCTGCGATGCTAGCTCATGGAGCTTGAGACCGTGTGTTCTGCATGCAGAGTACTCGAGCATATTGTAATTTTGGTGCAGTACTACAGTGGCATGGAAACAATGTGCCGGCGTCCCTTAGTCATGGCTCTGCCCAGCCAACCCGACGAAGTGGTCATATGCTTAGTGTGTAAAAATTTTATTGTTCGCAGTGTTTGTGTAGTTTAG ]
[+] EMBL OSS14777A [ TGCAGTCAGCACAGCTAGGGGTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCGCCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGGCANNCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGGCTGNCGNAGCGTCGTCCACCNCTCCCGCCATC GCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCAGCGNCGTTNGGCACCAGGAGAGCCGC ]
[+] EMBL C91643 [ AAAGACAGCCGAGGACTTCCTGAAGCTGAGCCCCGGCCGCAAGGTTAATTTTTCTCTAGACGCATCTTGATTGGTATATGTATTCGTGTTAATCCTGAGTAACATGACCACAGAAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCACTATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAACAACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATATGTTCTTTAGGTTA TNTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGACAAAT ]
[-] EMBL CF324745 [ TTGCTGTGCCAAAGGAATAAGATGAAGTTTCTGAAATTTGATATCCACTGACACCCTGCTGAAATCAAACATGGCACTATTATTATAGCAGCAACCGCTGACTGCTCACTCAAACACATCAAATCCTCAAACCTCAGCTGCGATGCTAGCTCATGGAGCTTGAGACCGTGTGTTCTGCATGCAGAGTACTCGAGCATATTGTAATTTTGGTGCAGTACTACAGTGGCATGGAAACAATGTGCCGGCGTCCCTTAGTCATGGCTCTGCCCAGCCAACCCGACGAAGTGGTCATATGCTTAGTGTGTAAAAATTTTATTGTTCGCAGTGTTTGTGTAGTTTAGCTTGTAATTCAATGTGATAATCGTCAGTAAAAACTTTATCTATCGATGTATTATTGCGGTGAAAGTTTGACCTCAATCTTTTCACCCCAATAAAATAGAGTAAATAAATTACTCAAAAAAAAAAAAAAAAAAAAAAAAATTCGAGACTAGTT]
consensusID : consensus_9158#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 961 fasta sequence
[GTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCGCCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGGCAGCCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGCCTGCCGCAGCGCCGTCCACCCCTCCCGCCATCGGCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCAGCGCCGGTGGCACCAGGAGAGCCGCGACAGGTCCGGGGCATCAGGCATGGCTTCCTCCTCCTTGCTCATCACGGACCAGCGCTGTATCGGTGAGACCTGGCGGCTGGAGGCTGGCCGTCCCTGTGCTATGCGTGGATTCCAGGCAGATTTGGCGCTGATGGCTGACATTGCCTGCGCAGGGCCACACCTGCTGCTCGTCAATTTCTTCCCTATCTACAAGCTGGGTCCTCACCAACACCTGCGACACTTCTCATATTGCCGGCACCCAAAGACAGCCGAGGACTTCCTGAAGCTGAGCCCCGGCCGCAAGAAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCACTATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAACAACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATATGTTCTTTAGGTTATTTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGACAAATGCATGTATGAAATTTTAGTTTTTTTGCTGTGCCAAAGGAATAAGATGAAGTTTCTGAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCCTTCCA]
[+] EMBL AK066829 [GTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCGCCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGGCAGCCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGCCTGCCGCAGCGCCGTCCACCCCTCCCGCCATCGGCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCAGCGCCGGTGGCACCAGGAGAGCCGCGACAGGTCCGGGGCATCAGGCATGGCTTCCTCCTCCTTGCTCATCACGGACCAGCGCTGTATCGGTGAGACCTGGCGGCTGGAGGCTGGCCGTCCCTGTGCTATGCGTGGATTCCAGGCAGATTTGGCGCTGATGGCTGACATTGCCTGCGCAGGGCCACACCTGCTGCTCGTCAATTTCTTCCCTATCTACAAGCTGGGTCCTCACCAACACCTGCGACACTTCTCATATTGCCGGCACCCAAAGACAGCCGAGGACTTCCTGAAGCTGAGCCCCGGCCGCAAGAAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCACTATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAACAACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATATGTTCTTTAGGTTATTTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGACAAATGCATGTATGAAATTTTAGTTTTT ]
[+] EMBL CF299392 [ CTATTAGTATATGTTCTTTAGGTTATTTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGACAAATACATGTATGAAATTTTAGGTTTTTTGCTGTGCCAAAGGAATAAGATGAAGTTTCTGAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCCTTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9158#0 CCTTATCCCCGAAATTTTTGGATCATCCACTCAGCCGGCGAACGCCTCACCCTGCCGTCA 60
consensus_9158#1 ------------------------------------------------------------
consensus_9158#0 AGATGGCCAGACCAGCTGGGATGCGGTGAAGAAGGAGCGGCTAGTGCAGTCAGCACAGCT 120
consensus_9158#1 ------------------------------------------------------------
consensus_9158#0 AGGGGTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCG 180
consensus_9158#1 ----GTCGCCAAACTCCACATCGGAGTGGCGTTAGAGGACCTGCCGTTGAGGGGGAGCCG 56
********************************************************
consensus_9158#0 CCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGG 240
consensus_9158#1 CCGTCATCCGATCAGATCTGGAGCCACCGTCGCCATGGCTCTCCACCGCGGAGGCCTAGG 116
************************************************************
consensus_9158#0 CAGCCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGCCTGCCGCAGCGCCGTCCACC 300
consensus_9158#1 CAGCCAAGGACACGAGGTGACTGCCAAGCTCCTCCAACGCCTGCCGCAGCGCCGTCCACC 176
************************************************************
consensus_9158#0 CCTCCCGCCATCGGCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCA 360
consensus_9158#1 CCTCCCGCCATCGGCGATGTTCATGAAGGAAACGGGATGTAACCCGATCCGCTGGGACCA 236
************************************************************
consensus_9158#0 GCGCCGGTGGCACCAGGAGAGCCGCGACAGGTCCGGGGCATCAGGCATGGCTTCCTCCTC 420
consensus_9158#1 GCGCCGGTGGCACCAGGAGAGCCGCGACAGGTCCGGGGCATCAGGCATGGCTTCCTCCTC 296
************************************************************
consensus_9158#0 CTTGCTCATCACGGACCAGCGCTGTATCGGTGAGACCTGGCGGCTGGAGGCTGGCCGTCC 480
consensus_9158#1 CTTGCTCATCACGGACCAGCGCTGTATCGGTGAGACCTGGCGGCTGGAGGCTGGCCGTCC 356
************************************************************
consensus_9158#0 CTGTGCTATGCGTGGATTCCAGGCAGATTTGGCGCTGATGGCTGACATTGCCTGCGCAGG 540
consensus_9158#1 CTGTGCTATGCGTGGATTCCAGGCAGATTTGGCGCTGATGGCTGACATTGCCTGCGCAGG 416
************************************************************
consensus_9158#0 GCCACACCTGCTGCTCGTCAATTTCTTCCCTATCTACAAGCTGGGTCCTCACCAACACCT 600
consensus_9158#1 GCCACACCTGCTGCTCGTCAATTTCTTCCCTATCTACAAGCTGGGTCCTCACCAACACCT 476
************************************************************
consensus_9158#0 GCGACACTTCTCATGTTGGTCCCTAGCTCTGCTCTCCTTTATCTCCTCTCTTTCAATTGA 660
consensus_9158#1 GCGACACTTCTCAT---------------------------------------------- 490
**************
consensus_9158#0 AGGGGTGGGTACCAGCAACCTTCTTCTTGCCAGTAAAACAAATAGATTTTTCCTCTTCGA 720
consensus_9158#1 ------------------------------------------------------------
consensus_9158#0 TTGTGCGGTCTTAATTTGCAACAGTATTTTTTTATTTTATTTTTTTTTGCATTTGCTCAT 780
consensus_9158#1 ------------------------------------------------------------
consensus_9158#0 TGATTTTGTTGTAGATTGCCGGCACCCAAAGACAGCCGAGGACTTCCTGAAGCTGAGCCC 840
consensus_9158#1 --------------ATTGCCGGCACCCAAAGACAGCCGAGGACTTCCTGAAGCTGAGCCC 536
**********************************************
consensus_9158#0 CGGCCGCAAGGTTAATTTTTCTCTAGACGCATCTTGATTGGTATATGTATTCGTGTTAAT 900
consensus_9158#1 CGGCCGCAAG-------------------------------------------------- 546
**********
consensus_9158#0 CCTGAGTAACATGACCACAGAAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCAC 960
consensus_9158#1 --------------------AAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCAC 586
****************************************
consensus_9158#0 TATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAAC 1020
consensus_9158#1 TATGATTGATGGAACTGATGGTTTGGGTGTTGCTGATTTGGGAGTTGGTGACATTGAAAC 646
************************************************************
consensus_9158#0 AACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATA 1080
consensus_9158#1 AACCACTGATTGCACAAACACATCAAATATATGTATAAGTTTTATGAGTCTATTAGTATA 706
************************************************************
consensus_9158#0 TGTTCTTTAGGTTATTTTTTTTTTGTACTAGTCTTGTATCTGACATTCTGAATTGCTGAC 1140
consensus_9158#1 TGTTCTTTAGGTTATTTTTTTTT-GTACTAGTCTTGTATCTGACATTCTGAATTGCTGAC 765
*********************** ************************************
consensus_9158#0 AAATACATGTATGAAATTTTAGGTTTTTTGCTGTGCCAAAGGAATAAGATGAAGTTTCTG 1200
consensus_9158#1 AAATGCATGTATGAAATTTTAGTTTTTTTGCTGTGCCAAAGGAATAAGATGAAGTTTCTG 825
**** ***************** *************************************
consensus_9158#0 AAATTTGATATCCACTGACACCCTGCTGAAATCAAACATGGCACTATTATTATAGCAGCA 1260
consensus_9158#1 AAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 885
*** * * * * * *** *** * * * * * * * *
consensus_9158#0 ACCGCTGACTGCTCACTCAAACACATCAAATCCTCAAACCTCAGCTGCGATGCTAGCTCA 1320
consensus_9158#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCC 945
* * * *** * * *** *** * * * * *
consensus_9158#0 TGGAGCTTGAGACCGTGTGTTCTGCATGCAGAGTACTCGAGCATATTGTAATTTTGGTGC 1380
consensus_9158#1 TT---TTTTCCCCCTTCCA----------------------------------------- 961
* ** ** *
consensus_9158#0 AGTACTACAGTGGCATGGAAACAATGTGCCGGCGTCCCTTAGTCATGGCTCTGCCCAGCC 1440
consensus_9158#1 ------------------------------------------------------------
consensus_9158#0 AACCCGACGAAGTGGTCATATGCTTAGTGTGTAAAAATTTTATTGTTCGCAGTGTTTGTG 1500
consensus_9158#1 ------------------------------------------------------------
consensus_9158#0 TAGTTTAGCTTGTAATTCAATGTGATAATCGTCAGTAAAAACTTTATCTATCGATGTATT 1560
consensus_9158#1 ------------------------------------------------------------
consensus_9158#0 ATTGCGGTGAAAGTTTGACCTCAATCTTTTCACCCCAATAAAATAGAGTAAATAAATTAC 1620
consensus_9158#1 ------------------------------------------------------------
consensus_9158#0 TCAAAAAAAAAAAAAAAAAAAAAAAAATTCGAGACTAGTT 1660
consensus_9158#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||