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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1316 fasta sequence
[AAATCTGGAGTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGTGCTTTGCTCCTCCCCTGCAGAAGTACTCGTAGTTAGAGAAAATTGCACCATGCTTATATGAATTTCAAGTTTCGGTAGATGCTTTAACGGTGTGAAATTTGTTGCTTGTGTTCCCAATTTGTGCCAGCAAACAAGGATTTATCACCTGACTACTGTAAACTATATTAGTTGAATGAACACATTTGCAAATGATATAGTAGCTACTAGCTAGTTCATTTTTTCAACTAGACAATGATTTTCTCCGAACAGCTTTTCAGATTTGTTGGTTGAATTTTAATGATATTGCCTACCTGCTAAATTGTAGAGATTCTATTTTGCATAACATTTATGACAAGCAAAATGTTCAAATTGGGCTTGATCTATGTATGTATGCAGCATCAGGTCTTATTTGAACATTTTGTTCAAAAGACGAAATGACTGGAGAAAATAATGTCGATATTAAAAGATCAAACGTTCCAGACCACTT-CCATAAAATCTACTTCAATTGCAAAATTGACACTAAATCATATGTTTTCTAACAAGTAAATTTGTTTTCTGCAGGAGAGGGCTGTCCAACTATTACCAAGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAAGAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACATGAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTCGAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAGTGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACAAAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTCAGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACTATTT]
[+] EMBL CB665165 [AAATCTGGAGTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGTGCTTTGCTCCTCCCCTGCAGAAGTACTCGTAGTTAGAGAAAATTGCACCATGCTTATATGAATTTCAAGTTTCGGTAGATGCTTTAACGGTGTGAAATTTGTTGCTTGTGTTCCCAATTTGTGCCAGCAAACAAGGATTTATCACCTGACTACTGTAAACTATATTAGTTGAATGAACACATTTGCAAATGATATAGTAGCTACTAGCTAGTTCATTTTTTCAACTAGACAATGATTTTCTCCGAACAGCTTTTCAGATTTGTTGGTTGAATTTTAATGATATTGCCTACCTGCTAAATTGTAGAGATTCTATTTTGCATAACATTTATGACAAGCAAAATGTTCAAATTGGGCTTGATCTATGTATGTATGCAGCATCAGGTCTTATTTGAACATTTTGTTCAAAAGACGAAATGACTGGAGAAAATAATGTCGATATTAAAAGATCAAACGTTCCAGACCACTTCCCAT AAATCTACTTNCATTGCAAAA TGACACTAAATCATATGTTTTCTAACAAGTAAAT ]
[+] EMBL CB654724 [ AATCTCGATTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGTGCTTTGCTCCTCCCCTGCAGAAGTACTCGTAGTTAGAGAAAATTGCACCATGCTTATATGAATTTCAAGTTTCGGTAGATGCTTTAACGGTGTGAAATTTGTTGCTTGTGTTCCCAATTTGTGCCAGCAAACAAGGATTTATCACCTGACTACTGTAAACTATATTAGTTGAATGAACACATTTGCAAATGATATAGTAGCTACTAGCTAGTTCATTTTTTCAACTAGACAATGATTTTCTCCGAACAGCTTTTCAGATTTGTTGGTTGAATTTTAATGATATTGCCTACCTGCTAAATTGTAGAGATTCTATTTTGCATAACATTTATGACAAGCAAAATGTTCAAATTGGGCTTGATCTATGTATGTATGCAGCATCAGGTCTTATTTGAACATTTTGTTCAAAAGACGAAATGACTGGAGAAAATAATGTCGATATTAAAAGATCAAACGTTCCAGACCACTT CCATAAAATCTACTTCAATTGCAAAATTGACACTAAATC ]
[-] EMBL CB665166 [ CAAACAAGGATTTATCACCTGACTACTGTAAACTATATTAGTTGAATGAACACATTTGCAAATGATATAGTAGCTACTAGCTAGTTCATTTTTTCAACTAGACAATGATTTTCTCCGAACAGCTTTTCAGATTTGTTGGTTGAATTTTAATGATATTGCCTACCTGCTAAATTGTAGAGATTCTATTTTGCATAACATTTATGACAAGCAAAATGTTCAAATTGGGCTTGATCTATGTATGTATGCAGCATCAGGTCTTATTTGAACATTTTGTTCAAAAGACGAAATGACTGGAGAAAATAATGTCGATATTAAAAGATCAAACGTTCCAGACCACTT CCATAAAATCTACTTCAATTGCAAAATTGACACTAAATCATATGTTTTCTAACAAGTAAATTTGTTTTCTGCAGGAGAGGGCTGTCCAACTATTACCAAGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAAGAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACATGAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTCGAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAGTGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACAAAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTCAGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACTATTT]
consensusID : consensus_9168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 815 fasta sequence
[TACTTGCCTTTGCCTTCCAAAATCTGGAGTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGAGAGGGCTGTCCAACTATTACCAAGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAAGAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACATGAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTCGAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAGTGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACAAAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTCAGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACTATTTTTTTTCTTCTGGGATCAACCTG]
[+] EMBL AK066722 [TACTTGCCTTTGCCTTCCAAAATCTGGAGTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGAGAGGGCTGTCCAACTATTACCAAGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAAGAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACATGAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTCGAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAGTGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACAAAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTCAGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACT ]
[+] EMBL CB662531 [ GCCTTCCAAAATCTGGAGTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGAGAGGGCTGTCCAACTATTACCAAGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAAGAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACATGAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTCGAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAGTGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACAAAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTANGGTTTCAGGTATCCAGTTTCAGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAGGAAAACTC ACTATTTTTTTTCTTCTGGGATCAACCT ]
[-] EMBL CB662532 [ AGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGAGAGGGCTGTCCAACTATTACCAAGGAAAATCCCAATCATTCACATCGATATCTGATGCTACACGTGTTCAGGACCTTGCAAAGAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACATGAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTCGAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAGTGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACAAAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTCAGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACTATTTTTTTTCTTCTGGGATCAACCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9168#0 AAATCTGGAGTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGA 60
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 GAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGAT 120
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 GATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCA 180
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 TCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCG 240
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 TCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGAC 300
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 TTGTCCTCACTGATAGCCCAGCTTCCTATCAGGTGCTTTGCTCCTCCCCTGCAGAAGTAC 360
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 TCGTAGTTAGAGAAAATTGCACCATGCTTATATGAATTTCAAGTTTCGGTAGATGCTTTA 420
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 ACGGTGTGAAATTTGTTGCTTGTGTTCCCAATTTGTGCCAGCAAACAAGGATTTATCACC 480
consensus_9168#1 --------------------------------------------------------TACT 4
**
consensus_9168#0 TGACTACTGTAAACTATATTAGTTGAATGAACACATTTGCAAATGATATAGTAGCTACTA 540
consensus_9168#1 TGCCT-TTGCCTTCCAAAATC-TGGAGTCCAAAAATACACAGGAGATA-AGCAGCCATTT 61
** ** ** * * * * * ** * * * ** ** **** ** *** * *
consensus_9168#0 GCTAGTTCATTTTTTCAACTAGACAATGATTTTCTCCGAACAGCTTTTCAGATTTGTTGG 600
consensus_9168#1 GCTCCTGGA-----AGAATGAGAGAAGCTTGCGCGCCGGT--GCCTCCTGGGGCTCATGA 114
*** * * ** *** ** * * *** ** * * * **
consensus_9168#0 TTGAATTTTAATGATATTGCCTACCTGCTAAATTGTAGA-GATTCTATTTTGCATAACAT 659
consensus_9168#1 GGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTT-CGT 173
* ** * * ** *** * *** * * * * * *
consensus_9168#0 TTATGACAAGCAAAATGTTCAAATTGGGCTTGATCTATGTATGTATGCAGCATCAGGTCT 719
consensus_9168#1 CCATCG-GGTCGTCGTGCTCAT-CGGCATCGGATCTGAGTGATGATGGG-----AGTTCT 226
** * ** *** * ***** ** *** ** ***
consensus_9168#0 TATTTGAACATTTTGTTCAAAAGACGAAATGACTGGAGAAAATAATGTCGATATTAAAAG 779
consensus_9168#1 TAC-----CGTCCTGGT---------GATTATCTTGAGCCGTCATCGTCGTCGTCA---- 268
** * * ** * * * ** *** * **** * *
consensus_9168#0 ATCAAACGTTCCAGACCACTTCCATAAAATCTACTTCAATTGCAAAATTGACACTAAATC 839
consensus_9168#1 --TCAGCATCTTCGAGCACAT--------TGCAGCTGGATT-CTGAAGGGCCGCTCTGTG 317
* * * ** *** * * * * *** * ** * * ** *
consensus_9168#0 ATATGTTTTCTAACAAGTAAATTTGTTTTCTG-CAGGAGAGGGCTGTCCAACTATTACCA 898
consensus_9168#1 ACTTGTCCTC--ACTGATAGCCCAGCTTCCTATCAGGAGAGGGCTGTCCAACTATTACCA 375
* *** ** ** ** * ** ** ***************************
consensus_9168#0 AGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAA 958
consensus_9168#1 AGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAA 435
************************************************************
consensus_9168#0 GAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACAT 1018
consensus_9168#1 GAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACAT 495
************************************************************
consensus_9168#0 GAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTC 1078
consensus_9168#1 GAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTC 555
************************************************************
consensus_9168#0 GAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAG 1138
consensus_9168#1 GAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAG 615
************************************************************
consensus_9168#0 TGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACA 1198
consensus_9168#1 TGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACA 675
************************************************************
consensus_9168#0 AAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTC 1258
consensus_9168#1 AAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTC 735
************************************************************
consensus_9168#0 AGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACTATTT-- 1316
consensus_9168#1 AGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACTATTTTT 795
**********************************************************
consensus_9168#0 --------------------
consensus_9168#1 TTTCTTCTGGGATCAACCTG 815
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||