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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 675 fasta sequence
[TTTTGGAAAGAAACAGAATGATCCGCCATATCTTGATTTCTCACTTAAAAAATTTTTTTGTTACAGGAAATTTCTGT-AATGAACCCAAAAAAAATTACCAATAG-TTTGGTGAGTAATACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAG-CAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAA-ACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTA-CAAAAAGTGCTCGCGTCGACTATGGCA-GACGCTGCAGGAACCAATATTCATCGGTTGGGCTGCAACTTTCAG-AAAGCACTATCACAAAATATCT-CTT-AATCCCTCCCTT--GAACCAAGGCATTCTTGGGGATTAGCATAGAAATAGTCCTCTTCCTTGGGCCGGCCAGGGATGACCTTTCTTTCTGTCGG]
[-] EMBL BQ906966 [TTTTGGAAAGAAACAGAATGATCCGCCATATCTTGATTTCTCACTTAAAAAAATAATGTGTTACAGGAAATTTCTGT AATGAACCCAAAAAAAATTACCAATAG TTTGGTGAGTAATACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAG CAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAA ACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGcgg ]
[+] EMBL CF325683 [ TTTTTTTGTTACAGGAAATTTCTGT AATGAACCCAAAAAAAATTACCAATAGTTTTGGTGAGTACTACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAG CAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAA ACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTA CAAAAAGTGCTCGCGTCGACTATGGCA GACGCTGCAGGAACCAATATTCATCGGTTGGGCTGCAACTTTCAG AAAGCACTATCACAAAATATCT CTT AATCCCTCCCTT GAACCAAGGCATTCTTGGGGATTAGCATAGAAATAGTCCTCTTCCTTGGGCCGGCCAGGGATGACCTTTCTTTCTGTCGG]
[-] EMBL BI812197 [ TTTTTTTTTTACAGGAAATTTCTGTAAATGAACCCAAAAAAAATTACCAATAG TTTGGTGAGTAATACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGGCCCTAAACAAGGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAAATAAATAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAGCCAGATTGGATG TCGTCTCTTCTTTGAAGTCTGAA CCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAACACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTACCACAAAGTGCTCGCGTCGACTATGGCACGACGCTGCAGGAACCAATATTCATCGG TGGGCTGC ACTTTCAGCACAGCCCTATCACAAAATATCTCCTTAAATCCCTCCCTTTGGAACC AGGCATTCCTG ]
consensusID : consensus_9169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 602 fasta sequence
[CCCGGGCTGTTTGAATTCGGCACGAGGTTTTTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGTTTTGGTGAGTACTACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATTATTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAACCAATATTCATCGGTTGGGCTGCAACTTTCAGAAAGCACTATCACAAAATATCTCTTAATCCCTCCCTTGAACCAGGCATTCTTGGGGATTAGCATAGA]
[+] EMBL CF326013 [CCCGGGCTGTTTGAATTCGGCACGAGGTTTTTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGTTTTGGTGAGTACTACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATTATTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAACCAATATTCATCGGTTGGGCTGCAACTTTCAGAAAGCACTATCACAAAATATCTCTTAATCCCTCCCTTGAACCAGGCATTCTTGGGGATTAGCATAGA]
[+] EMBL CF325401 [ TTTTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGTTTTGGTGAGTACTACAAAAGGCTTTGAGGAAACTCCTCAGAGAAGGTGGGGGGAACACTATGAGGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACAATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATCAAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATGCTCGTCTCTTCTTTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCCAGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGGAAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAACCAATATTCATCGGTTGGGC ]
consensusID : consensus_9169#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence
[TTTTTTTTTTGGAAAGAAACAGAATGATCCGGCATATCTTGATTTCTCACTTAAAAAAATAATGTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGGTTTTGGGTGAGTAATACAAAAGGCTTCTGAGGGAAACTCCTCAGAGACAAGGTGGGGGGAACACTATGGAGGGACCGTGGAACTTCATAACATTTCCAGGTAGTGGATCCAAGGAGTCGTCCAAAGAGAGTGGTATACAACGTGGGCCCCCCGTTAAACACCACACGTGGGGGAAAACCAACAGAGAAAGGCAGGANAGNAAAGTGGGACACNTGCACAAGTGGGAAAACACCCGTGANCCCAGACCTTAGANCTAATTCCAGAAGAACTTACAT]
[-] EMBL BQ906179 [TTTTTTTTTTGGAAAGAAACAGAATGATCCGGCATATCTTGATTTCTCACTTAAAAAAATAATGTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGGTTTTGGGTGAGTAATACAAAAGGCTTCTGAGGGAAACTCCTCAGAGACAAGGTGGGGGGAACACTATGGAGGGACCGTGGAACTTCATAACATTTCCAGGTAGTGGATCCAAGGAGTCGTCCAAAGAGAGTGGTATACAACGTGGGCCCCCCGTTAAACACCACACGTGGGGGAAAACCAACAGAGAAAGGCAGGANAGNAAAGTGGGACACNTGCACAAGTGGGAAAACACCCGTGANCCCAGACCTTAGANCTAATTCCAGAAGAACTTACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9169#0 ------TTTTGGAAAGAAACAGAATGATCCGCCATATCTTGATTTCTCACTTAAAAAATT 54
consensus_9169#1 ---------------------------CCCGGGCTGTTTGAATTCGGCAC---GAGGTTT 30
consensus_9169#2 TTTTTTTTTTGGAAAGAAACAGAATGATCCGGCATATCTTGATTTCTCACTTAAAAAAAT 60
*** * * * *** *** * *
consensus_9169#0 TTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAG--TTT-GGTG 111
consensus_9169#1 TTTTTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAG--TTTTGGTG 88
consensus_9169#2 AATGTGTTACAGGAAATTTCTGTAATGAACCCAAAAAAAATTACCAATAGGTTTTGGGTG 120
* ********************************************** *** ****
consensus_9169#0 AGTAATACAAAAGGCTTT--GAGGAAACTCCTCAGAGA--AGGTGGGGGGAACACTATGA 167
consensus_9169#1 AGTACTACAAAAGGCTTT--GAGGAAACTCCTCAGAGA--AGGTGGGGGGAACACTATGA 144
consensus_9169#2 AGTAATACAAAAGGCTTCTGAGGGAAACTCCTCAGAGACAAGGTGGGGGGAACACTATGG 180
**** ************ **************** *******************
consensus_9169#0 GGACACTGAACTTCTACATCAGTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACA 227
consensus_9169#1 GGACACTGAACTTCTACATTATTATGATCAGAGTCAAGAGTGTTACACTGCCCCTAAACA 204
consensus_9169#2 AGGGACCG---TGGAACTTCATAACATTTCCAGGTAGTGGATCCAAGGAGTCGTCCAAAG 237
* ** * * ** * * * * ** * * * * * **
consensus_9169#0 ATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATC 287
consensus_9169#1 ATGGAAACAAAAGAAGCAGAAGAATGGAATGAAATGGAAAACCTGACCAACTAACTAATC 264
consensus_9169#2 AGAGTGGTATACAACGTGG--GCCCCCCGTTAAACACCACACGTGGGGGAA-AACCAACA 294
* * * * * * * * * *** * ** ** * *** **
consensus_9169#0 AAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATG-CTCGTCTCTTCT 346
consensus_9169#1 AAGAATTACATAAGTATAACTGATGGGAGAAATGAGCAGATTGGATG-CTCGTCTCTTCT 323
consensus_9169#2 GAGAAAGGCAGGANAGNAA--AGTGGGACACNTGCACAAGTGGGAAAACACCCGTGANCC 352
**** ** * ** ***** * ** ** * *** * * * *
consensus_9169#0 TTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCC 406
consensus_9169#1 TTGAAGTCTGAACCCGTTGATTTGGAGCTTCTTTTCAGCTTTATTTCTGTGAGGGAATCC 383
consensus_9169#2 CAGACCTTAGANCTAATTCCAGAAGAACTTACAT-------------------------- 386
** * ** * ** ** *** *
consensus_9169#0 AGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGG 466
consensus_9169#1 AGTTATAAACATTTGAGATGTCAACTAGCCTGTACCTGAAGTAAATTCTCGGTATGAAGG 443
consensus_9169#2 ------------------------------------------------------------
consensus_9169#0 AAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAA 526
consensus_9169#1 AAGAACTCTGGTCAGCTGTACAAAAAGTGCTCGCGTCGACTATGGCAGACGCTGCAGGAA 503
consensus_9169#2 ------------------------------------------------------------
consensus_9169#0 CCAATATTCATCGGTTGGGCTGCAACTTTCAGAAAGCACTATCACAAAATATCTCTTAAT 586
consensus_9169#1 CCAATATTCATCGGTTGGGCTGCAACTTTCAGAAAGCACTATCACAAAATATCTCTTAAT 563
consensus_9169#2 ------------------------------------------------------------
consensus_9169#0 CCCTCCCTTGAACCAAGGCATTCTTGGGGATTAGCATAGAAATAGTCCTCTTCCTTGGGC 646
consensus_9169#1 CCCTCCCTTGAACCA-GGCATTCTTGGGGATTAGCATAGA-------------------- 602
consensus_9169#2 ------------------------------------------------------------
consensus_9169#0 CGGCCAGGGATGACCTTTCTTTCTGTCGG 675
consensus_9169#1 -----------------------------
consensus_9169#2 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||