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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9171#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1478 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAACAGAGGGGAAACAAGAAGAAATGCAGGAGATGTAATGTTAATGATACAACAGAATGCAGGATATGCTATGCTTTTATACTTTAAAACAAAGATTGGTTCCTACAAAATGGGGGGCAGAAATAAACAATTCATATCCAATGCCCAACCCTCTTCTTCTTCCTTTTTTCTTCCCTATACCCCTCTCACTCCTGATGGAGGCAACAACAACAACAAGGTGCTGGAGGGGGAACAGCTAGACCAATTTTTCATCAACAATAAGAGTTCCAGAAACCTATTATACATGAAGAGGAGGCAAGCAGCAAAACAAGATTAGTTCCACTAGTACAGGAGGTCAAATAAAAGAATCACCACACCCAAGGGCTGGGGGTCCTATCGACGACGACGATTTCACCGGGCACCGTCAGCAGGGTGCAACTAGTTAGCACAGAACACAGTAGTTACCACCTATTGTGGTACACCCCTTTCATCCATTTCA-TTTCTTTCCTTTGAAGAAGAGGAGGCAGAGGCAGGCTTCCAAGCCATAGGTTAACAACTGGCGGAAGAATGCGCGACGTCTTGCATCTCCAGGACAGTTTCATGGGACGAATCCATCTGAGACAACTTCTTAGCTAGATCCTCTAATTCAACCATATCCCAAGCTTCTACTTGGGAGTGGGAATGAGCGAGGGCAGCGACACTGCGCGCTCCCTATCTTCTTTCCACAGTATATAGCTGTACAGATGCCACTACTCGTTTGCAGCAACTTCTGCTGCTCTCTGTCTCATCATTTCATTTACAGCAGCCCTCCTCCTAGAATCAGATTGCTGTTGCAACCTTCGAAGATGCTCCTTGAGATCCCTGCATCTCGGCACGTTGCATCCTGAGTCCCTGCAAGCTCGGGCATGGAGCTGGAGCATGTACCACATTTTCTTGCAAAGAACACACCCTCCTGAAGCACGTGTTTTGCACTGCATCCCATGACGAAACAGTCCCTTGACTTTCCGGCAGTTTGGGTATTGACAACTGCCAGAGCGGCATGTCGAGGCATGTACCAGAAGATCAAGCATCTTCCTTAGCTGCTGGACACGCATTTGCCGAGCTTCCTTATTTTGGGCATCACGATCAGCAGCTGATGGATGGTTTGTTAACTTGTGAGCATGATTGACTGCTCCTTTTTGGTAACAAGAATTGCATACATCAAAATCTGGACAGACTTCACACCGCCAACCCTGACCAGTTTCAATATCATGACAGCAGACGTTGCATGTAGTGACAAACGCTGGTGCGGTTGGATTATGTAGATGGTACAACACCATCATCGATGAGTGCTTAGCACGGCGAAGGGTATCGTACTGATAATGATTTCCTTGACAGAGACTAAGGAAGGCCTGCCTGGTGTCAAAAAATTCACTTTCCAGAATATCATCTCTATCCTTGAAGGTTTGG]
[-] EMBL AU085781 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAACAGAGGGGAAACAAGAAGAAATGCAGGAGATGTAATGTTAATGATACAACAGAATGCAGGATATGCTATGCTTTTATACTTTAAAACAAAGATTGGTTCCTACAAAATGGGGGGCAGAAATAAACAATTCATATCCAATGCCCAACCCTCTTCTTCTTCCTTTTTTCTTCCCTATACCCCTCTCACTCCTGATGGAGNCAACAACANCAACAAGGTGNTNGAGGGGGAANANCTAGACC ]
[+] EMBL CB672223 [ GGATATGCTATGCTTTTACTTTTTAAAACAAAGATTGGTTCCTACAAAATGGGGGGCAGAAATAAACAATTCATATCCAATGCCCAACCCTCTTCTTCTTCCTTTTTTCTTCCCTATACCCCTCTCACTCCTGATGGAGGCAACAACAACAACAAGGTGCTGGAGGGGGAACAGCTAGACCAATTTTTCATCAACAATAAGAGTTCCAGAAACCTATTATACATGAAGAGGAGGCAAGCAGCAAAACAAGATTAGTTCCACTAGTACAGGAGGTCAAATAAAAGAATCACCACACCCAAGGGCTGGGGGTCCTATCGACGACGACGATTTCACCGGGCACCGTCAGCAGGGTGCAACTAGTTAGCACAGAACACAGTAGTTACCACCTATTGTGGTACACCCCTTTCATCCATTTCA TTTCTTTCCTTTGAAGAAGAGGAGGCAGAGGCAGGCTTCCAAGCCATAGGTTAACAACTGGCGGAAGAATGCGCGACGTCTTGCATCTCCAGGACAGTTTCATGGGACGAATCCATCTGAGACAACTTCTTAGCTAGATCCTCTAATTCAACCATATCCCAAGCTTCTACTTGGGAGTGGGAATGAGCGAGGGCAGCGACACTGCGCGCTCCCTATCTTCTTTCCACAGTATATAGCTGTACAGATGCCACTACTCGTTTGCAGCAACTTCTGCTGCTCTCTGTCTCATCATTTCATTTACAGCAGCCCTCCTCCTAGAATCAGATTGCTGTTGCAACCTTCGAAGATGCTCCTTGAGATCCCTGCATCTCGGCACG ]
[+] EMBL CF325700 [ GATATGCTATGCTTTTATACTTTAAAACAAAGATTGGTTCCTACAAAATGGGGGGCAGAAATAAACAATTCATATCCAATGCCCAACCCTCTTCTTCTTCCTTTTTTCTTCCCTATACCCCTCTCACTCCTGATGGAGGCAACAACAACAACAAGGTGCTGGAGGGGGAACAGCTAGACCAATTTTTCATCAACAATAAGAGTTCCAGAAACCTATTATACATGAAGAGGAGGCAAGCAGCAAAACAAGATTAGTTCCACTAGTACAGGAGGTCAAATAAAAGAATCACCACACCCAAGGGCTGGGGGTCCTATCGACGACGACGATTTCACCGGGCACCGTCAGCAGGGTGCAACTAGTTAGCACAGAACACAGTAGTTACCACCTATTGTGGTACACCCCTTTCATCCATTTCATTTTCTT ]
[-] EMBL CB672222 [ CTTCTACTTGGGAGTGGGAATGAGCGAGGGCAGCGACACTGCGCGCTCCCTATCTTCTTTCCACAGTATATAGCTGTACAGATGCCACTACTCGTTTGCAGCAACTTCTGCTGCTCTCTGTCTCATCATTTCATTTACAGCAGCCCTCCTCCTAGAATCAGATTGCTGTTGCAACCTTCGAAGATGCTCCTTGAGATCCCTGCATCTCGGCACGTTGCATCCTGAGTCCCTGCAAGCTCGGGCATGGAGCTGGAGCATGTACCACATTTTCTTGCAAAGAACACACCCTCCTGAAGCACGTGTTTTGCACTGCATCCCATGACGAAACAGTCCCTTGACTTTCCGGCAGTTTGGGTATTGACAACTGCCAGAGCGGCATGTCGAGGCATGTACCAGAAGATCAAGCATCTTCCTTAGCTGCTGGACACGCATTTGCCGAGCTTCCTTATTTTGGGCATCACGATCAGCAGCTGATGGATGGTTTGTTAACTTGTGAGCATGATTGACTGCTCCTTTTTGGTAACAAGAATTGCATACATCAAAATCTGGACAGACTTCACACCGCCAACCCTGACCAGTTTCAATATCATGACAGCAGACGTTGCATGTAGTGACAAACGCTGGTGCGGTTGGATTATGTAGATGGTACAACACCATCATCGATGAGTGCTTAGCACGGCGAAGGGTATCGTACTGATAATGATTTCCTTGACAGAGACTAAGGAAGGCCTGCCTGGTGTCAAAAAATTCACTTTCCAGAATATCATCTCTATCCTTGAAGGTTTGG]
[-] EMBL CD645553 [ CTACTCGTTTGCAGCAACTTCTGCTGCTCTCTGTCTCATCATTTCATTTACAGCAGCCCTCCTCCTAGAATCAGATTGCTGTTGCAACCTTCGAAGATGCTCCTTGAGATCCCTGCATCTCGGCACGTTGCATCCTGAGTCCCTGCAAGCTCGGGCATGGAGCT ]
consensusID : consensus_9171#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence
[AAAAGAATCACCACACCCAAGGGNTGGGGGTCCCNATCGAGGACGAGGATTTCACCGGGCACCGTCAGCNGGGTGCAATTAGTNNGCACAGCACACGGTNGNTACCACTTATTGNGGAACACCCCTTTNCATCCATTTTNATTTNTTTTCCNTTGAAGAAGAGGAGGCAGAGGCAGGTTTCCAAGCCATAGGTTAACAANTGGCGGAAGAATGCGCGACGTCTTGCATCTCCAGGACAGTTTCATGGGACGAATCCCATNTGAGACAACTTCTTAGCTAGATCNTGTTAATTCAACCATATCCCCAAGCTTCCTACCCNGGGAGTGGGAANGAGC]
[-] EMBL BE228530 [AAAAGAATCACCACACCCAAGGGNTGGGGGTCCCNATCGAGGACGAGGATTTCACCGGGCACCGTCAGCNGGGTGCAATTAGTNNGCACAGCACACGGTNGNTACCACTTATTGNGGAACACCCCTTTNCATCCATTTTNATTTNTTTTCCNTTGAAGAAGAGGAGGCAGAGGCAGGTTTCCAAGCCATAGGTTAACAANTGGCGGAAGAATGCGCGACGTCTTGCATCTCCAGGACAGTTTCATGGGACGAATCCCATNTGAGACAACTTCTTAGCTAGATCNTGTTAATTCAACCATATCCCCAAGCTTCCTACCCNGGGAGTGGGAANGAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9171#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAACAGAGGG 60
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 GAAACAAGAAGAAATGCAGGAGATGTAATGTTAATGATACAACAGAATGCAGGATATGCT 120
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 ATGCTTTTATACTTTAAAACAAAGATTGGTTCCTACAAAATGGGGGGCAGAAATAAACAA 180
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 TTCATATCCAATGCCCAACCCTCTTCTTCTTCCTTTTTTCTTCCCTATACCCCTCTCACT 240
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 CCTGATGGAGGCAACAACAACAACAAGGTGCTGGAGGGGGAACAGCTAGACCAATTTTTC 300
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 ATCAACAATAAGAGTTCCAGAAACCTATTATACATGAAGAGGAGGCAAGCAGCAAAACAA 360
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 GATTAGTTCCACTAGTACAGGAGGTCAAATAAAAGAATCACCACACCCAAGGGCTGGGGG 420
consensus_9171#1 ------------------------------AAAAGAATCACCACACCCAAGGGNTGGGGG 30
*********************** ******
consensus_9171#0 TCC-TATCGACGACGACGATTTCACCGGGCACCGTCAGCAGGGTGCAACTAGTTAGCACA 479
consensus_9171#1 TCCCNATCGAGGACGAGGATTTCACCGGGCACCGTCAGCNGGGTGCAATTAGTNNGCACA 90
*** ***** ***** ********************** ******** **** *****
consensus_9171#0 GAACACAGTAGTTACCACCTATTGTGGTACACCCCTTTC-ATCCATTTCA--TTTCTTTC 536
consensus_9171#1 GCACACGGTNGNTACCACTTATTGNGGAACACCCCTTTNCATCCATTTTNATTTNTTTTC 150
* **** ** * ****** ***** ** ********** ******** ** ****
consensus_9171#0 CTTTGAAGAAGAGGAGGCAGAGGCAGGCTTCCAAGCCATAGGTTAACAACTGGCGGAAGA 596
consensus_9171#1 CNTTGAAGAAGAGGAGGCAGAGGCAGGTTTCCAAGCCATAGGTTAACAANTGGCGGAAGA 210
* ************************* ********************* **********
consensus_9171#0 ATGCGCGACGTCTTGCATCTCCAGGACAGTTTCATGGGACGAATCC-ATCTGAGACAACT 655
consensus_9171#1 ATGCGCGACGTCTTGCATCTCCAGGACAGTTTCATGGGACGAATCCCATNTGAGACAACT 270
********************************************** ** **********
consensus_9171#0 TCTTAGCTAGATCCT-CTAATTCAACCATATCCC-AAGCTTCTA--CTTGGGAGTGGGAA 711
consensus_9171#1 TCTTAGCTAGATCNTGTTAATTCAACCATATCCCCAAGCTTCCTACCCNGGGAGTGGGAA 330
************* * ***************** ******* * ***********
consensus_9171#0 TGAGCGAGGGCAGCGACACTGCGCGCTCCCTATCTTCTTTCCACAGTATATAGCTGTACA 771
consensus_9171#1 NGAGC------------------------------------------------------- 335
****
consensus_9171#0 GATGCCACTACTCGTTTGCAGCAACTTCTGCTGCTCTCTGTCTCATCATTTCATTTACAG 831
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 CAGCCCTCCTCCTAGAATCAGATTGCTGTTGCAACCTTCGAAGATGCTCCTTGAGATCCC 891
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 TGCATCTCGGCACGTTGCATCCTGAGTCCCTGCAAGCTCGGGCATGGAGCTGGAGCATGT 951
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 ACCACATTTTCTTGCAAAGAACACACCCTCCTGAAGCACGTGTTTTGCACTGCATCCCAT 1011
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 GACGAAACAGTCCCTTGACTTTCCGGCAGTTTGGGTATTGACAACTGCCAGAGCGGCATG 1071
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 TCGAGGCATGTACCAGAAGATCAAGCATCTTCCTTAGCTGCTGGACACGCATTTGCCGAG 1131
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 CTTCCTTATTTTGGGCATCACGATCAGCAGCTGATGGATGGTTTGTTAACTTGTGAGCAT 1191
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 GATTGACTGCTCCTTTTTGGTAACAAGAATTGCATACATCAAAATCTGGACAGACTTCAC 1251
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 ACCGCCAACCCTGACCAGTTTCAATATCATGACAGCAGACGTTGCATGTAGTGACAAACG 1311
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 CTGGTGCGGTTGGATTATGTAGATGGTACAACACCATCATCGATGAGTGCTTAGCACGGC 1371
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 GAAGGGTATCGTACTGATAATGATTTCCTTGACAGAGACTAAGGAAGGCCTGCCTGGTGT 1431
consensus_9171#1 ------------------------------------------------------------
consensus_9171#0 CAAAAAATTCACTTTCCAGAATATCATCTCTATCCTTGAAGGTTTGG 1478
consensus_9171#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||