cluster # 918

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Oryza sativa
cluster # 918 cluster # 918 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_918#0 length = 1185 sequences # 1

consensus_918#1 length = 236 sequences # 1

consensusID : consensus_918#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1185
fasta sequence

                              [TATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGCTTCCGTGGCGCGCGCGGCTGCTCGTGGGCGCCGTCTCCGTTCTGCACTCGGCGTCGCTCCGCCGCGACGGCACCGTCAACCGCTTCCTCCTGTCGCTGTTCGACCGCGTCGTGCCGCCCAACCCGGCCCCCGACGCCGCCGGCGTGGCGTCCTCGGACCATGCCGTGTCCGACGACCTCCGCGTCAGGATGTTCTTTCCGGGGGCAGCTGCCAGGGATGGCGGCGGCGATCATCTGCCGGTGGTGGTATACTTCCACGGCGGCGGCTTCGTGTTCCACTCCGTGGCGTCCGCGCAGTTCGACGCGCTGTGCCGTCGCTTCGCCTCGGCCATCCCGGCGGTCGTCGCGTCCGTCGACTTCCGCCTCGCGCCCGAGCACGGTTTCCCGGCGCCCTACGACGACGGCAAGGCGGCACTCCGCTGGGTCCTCGCCGGCGCCGGTGGCGCCCTCCCGTCACCGCCCGCCACCGTCTTCGTGGCGGGCGACAGCGCGGGCGGCAACGTCGCCCACCACGTCGTCGCCCGCACGCCGAGCAGCGTGTCCGGGCTCATCGCGCTGCAGCCGTTCTTCGCCGGCGAGACGCCGACCGCCTCCGAGCAGCGGCTCCGCGACGCGCCGTTCGGGTCGCCGGAGCGGATATCCTGGCTGTGGCGCGCGTTCCTCCCACCCGGCGCCACGCGGGACCACGAGGCGGCCAACGTGCCCGCCGCGCTCCGGCGCGACGCCGAGCGGCGCCGCGCGTTCCCGCCGACCATGGTCTGCGTCGGCGGGTGGGACGCGCACCAGGACAGGCAGCGCGACTACGCCGACGCCCTCCGCGCCGCGGGCGGCGCCGAGGAGGTCGTCGTCGCCGAGTTCCCCGACGCCATCCACGCGTTCTACATCTTCGACGACCTCGCCGACAGCAAGAGGCTGCTCACCGAAGTCACCGCCTTCGTCAACCGCCGCCGCCTCCTAGTGCTCCACATTCTTGAACTTGCAGTAGCCGACATTACAGTTTGCTTCACTGTATCGCTAGCTCGTCTCCACTCACACAATTTCTCATTTGATTTGATTTGATTTGATTCATACGATGAATTCAACGAGACGAGCT]

[+] EMBL AK109579             [TATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGCTTCCGTGGCGCGCGCGGCTGCTCGTGGGCGCCGTCTCCGTTCTGCACTCGGCGTCGCTCCGCCGCGACGGCACCGTCAACCGCTTCCTCCTGTCGCTGTTCGACCGCGTCGTGCCGCCCAACCCGGCCCCCGACGCCGCCGGCGTGGCGTCCTCGGACCATGCCGTGTCCGACGACCTCCGCGTCAGGATGTTCTTTCCGGGGGCAGCTGCCAGGGATGGCGGCGGCGATCATCTGCCGGTGGTGGTATACTTCCACGGCGGCGGCTTCGTGTTCCACTCCGTGGCGTCCGCGCAGTTCGACGCGCTGTGCCGTCGCTTCGCCTCGGCCATCCCGGCGGTCGTCGCGTCCGTCGACTTCCGCCTCGCGCCCGAGCACGGTTTCCCGGCGCCCTACGACGACGGCAAGGCGGCACTCCGCTGGGTCCTCGCCGGCGCCGGTGGCGCCCTCCCGTCACCGCCCGCCACCGTCTTCGTGGCGGGCGACAGCGCGGGCGGCAACGTCGCCCACCACGTCGTCGCCCGCACGCCGAGCAGCGTGTCCGGGCTCATCGCGCTGCAGCCGTTCTTCGCCGGCGAGACGCCGACCGCCTCCGAGCAGCGGCTCCGCGACGCGCCGTTCGGGTCGCCGGAGCGGATATCCTGGCTGTGGCGCGCGTTCCTCCCACCCGGCGCCACGCGGGACCACGAGGCGGCCAACGTGCCCGCCGCGCTCCGGCGCGACGCCGAGCGGCGCCGCGCGTTCCCGCCGACCATGGTCTGCGTCGGCGGGTGGGACGCGCACCAGGACAGGCAGCGCGACTACGCCGACGCCCTCCGCGCCGCGGGCGGCGCCGAGGAGGTCGTCGTCGCCGAGTTCCCCGACGCCATCCACGCGTTCTACATCTTCGACGACCTCGCCGACAGCAAGAGGCTGCTCACCGAAGTCACCGCCTTCGTCAACCGCCGCCGCCTCCTAGTGCTCCACATTCTTGAACTTGCAGTAGCCGACATTACAGTTTGCTTCACTGTATCGCTAGCTCGTCTCCACTCACACAATTTCTCATTTGATTTGATTTGATTTGATTCATACGATGAATTCAACGAGACGAGCT]




>consensus_918#0
TATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGG
CGGCGGCGGCGGTGCCGAGCGACAGACCACCGCTTCCGTGGCGCGCGCGGCTGCTCGTGG
GCGCCGTCTCCGTTCTGCACTCGGCGTCGCTCCGCCGCGACGGCACCGTCAACCGCTTCC
TCCTGTCGCTGTTCGACCGCGTCGTGCCGCCCAACCCGGCCCCCGACGCCGCCGGCGTGG
CGTCCTCGGACCATGCCGTGTCCGACGACCTCCGCGTCAGGATGTTCTTTCCGGGGGCAG
CTGCCAGGGATGGCGGCGGCGATCATCTGCCGGTGGTGGTATACTTCCACGGCGGCGGCT
TCGTGTTCCACTCCGTGGCGTCCGCGCAGTTCGACGCGCTGTGCCGTCGCTTCGCCTCGG
CCATCCCGGCGGTCGTCGCGTCCGTCGACTTCCGCCTCGCGCCCGAGCACGGTTTCCCGG
CGCCCTACGACGACGGCAAGGCGGCACTCCGCTGGGTCCTCGCCGGCGCCGGTGGCGCCC
TCCCGTCACCGCCCGCCACCGTCTTCGTGGCGGGCGACAGCGCGGGCGGCAACGTCGCCC
ACCACGTCGTCGCCCGCACGCCGAGCAGCGTGTCCGGGCTCATCGCGCTGCAGCCGTTCT
TCGCCGGCGAGACGCCGACCGCCTCCGAGCAGCGGCTCCGCGACGCGCCGTTCGGGTCGC
CGGAGCGGATATCCTGGCTGTGGCGCGCGTTCCTCCCACCCGGCGCCACGCGGGACCACG
AGGCGGCCAACGTGCCCGCCGCGCTCCGGCGCGACGCCGAGCGGCGCCGCGCGTTCCCGC
CGACCATGGTCTGCGTCGGCGGGTGGGACGCGCACCAGGACAGGCAGCGCGACTACGCCG
ACGCCCTCCGCGCCGCGGGCGGCGCCGAGGAGGTCGTCGTCGCCGAGTTCCCCGACGCCA
TCCACGCGTTCTACATCTTCGACGACCTCGCCGACAGCAAGAGGCTGCTCACCGAAGTCA
CCGCCTTCGTCAACCGCCGCCGCCTCCTAGTGCTCCACATTCTTGAACTTGCAGTAGCCG
ACATTACAGTTTGCTTCACTGTATCGCTAGCTCGTCTCCACTCACACAATTTCTCATTTG
ATTTGATTTGATTTGATTCATACGATGAATTCAACGAGACGAGCT

consensusID : consensus_918#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [CGCACGTCGCTGCGGTTGGACGTCGCGGGCCACGCGGTAGACCGCGACAAACACTTGCCACCTTCTCTGTGTCGCCTTATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGTTTTCGTGGCGCGCGCGGCTGCTCGTGGGCGCCGTATTCGTTCTGCTCTAGGTGTTATTATGACTTG]

[+] EMBL CA758595             [CGCACGTCGCTGCGGTTGGACGTCGCGGGCCACGCGGTAGACCGCGACAAACACTTGCCACCTTCTCTGTGTCGCCTTATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGTTTTCGTGGCGCGCGCGGCTGCTCGTGGGCGCCGTATTCGTTCTGCTCTAGGTGTTATTATGACTTG]




>consensus_918#1
CGCACGTCGCTGCGGTTGGACGTCGCGGGCCACGCGGTAGACCGCGACAAACACTTGCCA
CCTTCTCTGTGTCGCCTTATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAG
AGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGTTTTCGTGGCG
CGCGCGGCTGCTCGTGGGCGCCGTATTCGTTCTGCTCTAGGTGTTATTATGACTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_918#0      ------------------------------------------------------------
consensus_918#1      CGCACGTCGCTGCGGTTGGACGTCGCGGGCCACGCGGTAGACCGCGACAAACACTTGCCA 60
                                                                                 

consensus_918#0      -----------------TATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAG 43
consensus_918#1      CCTTCTCTGTGTCGCCTTATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAG 120
                                      *******************************************

consensus_918#0      AGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGCTTCCGTGGCG 103
consensus_918#1      AGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGTTTTCGTGGCG 180
                     ************************************************* ** *******

consensus_918#0      CGCGCGGCTGCTCGTGGGCGCCGTCTCCGTTCTGCACTCGGCGTCGCTCCGCCGCGACGG 163
consensus_918#1      CGCGCGGCTGCTCGTGGGCGCCGTATTCGTTCTGCTCTAGGTGTTATTATGACTTG---- 236
                     ************************ * ******** ** ** **   *  * *  *    

consensus_918#0      CACCGTCAACCGCTTCCTCCTGTCGCTGTTCGACCGCGTCGTGCCGCCCAACCCGGCCCC 223
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGACGCCGCCGGCGTGGCGTCCTCGGACCATGCCGTGTCCGACGACCTCCGCGTCAGGAT 283
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      GTTCTTTCCGGGGGCAGCTGCCAGGGATGGCGGCGGCGATCATCTGCCGGTGGTGGTATA 343
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CTTCCACGGCGGCGGCTTCGTGTTCCACTCCGTGGCGTCCGCGCAGTTCGACGCGCTGTG 403
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CCGTCGCTTCGCCTCGGCCATCCCGGCGGTCGTCGCGTCCGTCGACTTCCGCCTCGCGCC 463
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGAGCACGGTTTCCCGGCGCCCTACGACGACGGCAAGGCGGCACTCCGCTGGGTCCTCGC 523
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGGCGCCGGTGGCGCCCTCCCGTCACCGCCCGCCACCGTCTTCGTGGCGGGCGACAGCGC 583
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      GGGCGGCAACGTCGCCCACCACGTCGTCGCCCGCACGCCGAGCAGCGTGTCCGGGCTCAT 643
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGCGCTGCAGCCGTTCTTCGCCGGCGAGACGCCGACCGCCTCCGAGCAGCGGCTCCGCGA 703
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGCGCCGTTCGGGTCGCCGGAGCGGATATCCTGGCTGTGGCGCGCGTTCCTCCCACCCGG 763
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGCCACGCGGGACCACGAGGCGGCCAACGTGCCCGCCGCGCTCCGGCGCGACGCCGAGCG 823
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      GCGCCGCGCGTTCCCGCCGACCATGGTCTGCGTCGGCGGGTGGGACGCGCACCAGGACAG 883
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      GCAGCGCGACTACGCCGACGCCCTCCGCGCCGCGGGCGGCGCCGAGGAGGTCGTCGTCGC 943
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CGAGTTCCCCGACGCCATCCACGCGTTCTACATCTTCGACGACCTCGCCGACAGCAAGAG 1003
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      GCTGCTCACCGAAGTCACCGCCTTCGTCAACCGCCGCCGCCTCCTAGTGCTCCACATTCT 1063
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      TGAACTTGCAGTAGCCGACATTACAGTTTGCTTCACTGTATCGCTAGCTCGTCTCCACTC 1123
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      ACACAATTTCTCATTTGATTTGATTTGATTTGATTCATACGATGAATTCAACGAGACGAG 1183
consensus_918#1      ------------------------------------------------------------
                                                                                 

consensus_918#0      CT 1185
consensus_918#1      --