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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1180 fasta sequence
[CAGCCAGCCAAACAGTAGCAACATGAGTACTTCAGCTCGCCGCCTCCTCCTCCTCGCCGGCGCCGCTGCCGCCATCGCACTCCTGCTCTCGGCCACTGCCCCGGTGGCCGGAGCCGAGGACGACGGCTACAGCTACATCCCTGGCTCACCCAGGGGGCCGCAGAACTGGGGCAGCCTGAAGCCGGAATGGGCCACCTGCAGCAGCGGCAAGATGCAGTCGCCGATCAACCTCGGCCTCCTCGACCTCACCTTGGCTCCCGGCCTCGGCAACCTCAACTACACCTACCAGAACGCCAACGCCTCCGTCGTCAACCGTGGCCACGACATCATGGTCAGGTTTGACGGCGACGCCGGTAGCCTAAAGATAAATGGCACGGCGTACCAGCTCCGGCAGATGCACTGGCACACGCCGTCGGAGCACACCATCGATGGCCGGAGGTACGACATGGAGCTGCACATGGTGCACCTCAACGCCCAGAACCAGGCCGCCGTCATTGGCATCCTCTACACCATCGGCACCCGGGACGAGTTTCTGCAAAAGCTAGAGCCTTATATAATTGAGATATCAAAGCAAGAAGGCAAAGAGAGAGTGATCATTGGTGGGGGCGGATCCAAATGTAGCCAAGGGACAGGATACCGTGTACTACCGCTACATGGGCTCCTTTACCACACCACCTTGCACTGAGGGAGTCATCTGGACCGTTGTCAGGAAGGTGCGCACCGTGTCACTGTCCCAAATCACACTTCTCAAGGCAGCTGTGCTCACGGGTAACGAGAACAACGCGAGACCCCTTCAGGGCGTGAACAACAGGGAGATTGACCTGTTCCTTCCTCTCCCTCTCATCAACAACTGAACAGCATGCTTGACATACACAGCTGATTTACAACGCATCGCCTGACACACGCATGGAGAATCAGCAAACATATGTGTACTAATAAATATATAGTATTACTCATGTTTGTGTAATCTTATCCTAATGGTGTCGCTTATATATATATATATATATCGTCTTGATCACCTAGCTTCGTAAAGAGAGATCAGCATATATGTTGTTCAATCACATCTGCATAGCATAATAATGCATGCATAGATTTTATATGTATCTCTTTCCGGTGCTGCTATGTGTATCTCTATATGATTAAATAAAAATACCAATGTTTTATAAAAAAAAAAAAAAAA]
[+] EMBL CF310576 [CAGCCAGCCAAACAGTAGCAACATGAGTACTTCAGCTCGCCGCCTCCTCCTCCTCGCCGGCGCCGCTGCCGCCATCGCACTCCTGCTCTCGGCCACTGCCCCGGTGGCCGGAGCCGAGGACGACGGCTACAGCTACATCCCTGGCTCACCCAGGGGGCCGCAGAACTGGGGCAGCCTGAAGCCGGAATGGGCCACCTGCAGCAGCGGCAAGATGCAGTCGCCGATCAACCTCGGCCTCCTCGACCTCACCTTGGCTCCCGGCCTCGGCAACCTCAACTACACCTACCAGAACGCCAACGCCTCCGTCGTCAACCGTGGCCACGACATCATGGTCAGGTTTGACGGCGACGCCGGTAGCCTAAAGATAAATGGCACGGCGTACCAGCTCCGGCAGATGCACTGGCACACGCCGTCGGAGCACACCATCGATGGCCGGAGGTACGACATGGAGCTGCACATGGTGCACCTCAACGCCCAGAACCAGGCCGCCGTCATTGGCATCCTCTACACCATCGGCACCCGGGACGAGTTTCTGCAAAAGCTAGAGCCTTATATAATTGAGATATCAAAGCAAGAAGGCAAAGAGAGAGTGATCATTGGTGGGGGCGGATCCAAATGTAGCCAAGGGACAGGATACCGTGTACTACCGCTACATGGGCTCCT ]
[-] EMBL CF326739 [ GATATCAAAGCAAGAAGGCAAAGAGAGAGTGATCATTGGT GGGGCGGATCCAAATGTAGCCAAGGGACAGGATACCGTGTACTACCGCTACATGGGCTCCTTTACCACACCACCTTGCACTGAGGGAGTCATCTGGACCGTTGTCAGGAAGGTGCGCACCGTGTCACTGTCCCAAATCACACTTCTCAAGGCAGCTGTGCTCACGGGTAACGAGAACAACGCGAGACCCCTTCAGGGCGTGAACAACAGGGAGATTGACCTGTTCCTTCCTCTCCCTCTCATCAACAACTGAACAGCATGCTTGACATACACAGCTGATTTACAACGCATCGCCTGACACACGCATGGAGAATCAGCAAACATATGTGTACTAATAAATATATAGTATTACTCATGTTTGTGTAATCTTATCCTAATGGTGTCGCTTATATATATATATATATATCGTCTTGATCACCTAGCTTCGTAAAGAGAGATCAGCATATATGTTGTTCAATCACATCTGCATAGCATAATAATGCATGCATAGATTTTATATGTATCTCTTTCCGGTGCTGCTATGTGTATCTCTATATGATTAAATAAAAATACCAATGTTTTATAAAAAAAAAAAAAAAA]
[-] EMBL CF310577 [ AGCCAAGGGACAGGATACCGTGTACTACCGCTACATGGGCTCCTTTACCACACCGCCTTGCACTGAGGGAGTCATCTGGACCGTTGTCAGGAAGGTGCGCACCGTGTCACTGTCCCAAATCACACTTCTCAAGGCAGCTGTGCTCACGGGTAACGAGAACAACGCGAGACCCCTTCAGGGCGTGAACAACAGGGAGATTGACCTGTTCCTTCCTCTCCCTCTCATCAACAACTGAACAGCATGCTTGACATACACAGCTGATTTACAACGCATCGCCTGACACACGCATGGAGAATCAGCAAACATATGTGTACTAATAAATATATAGTATTACTCATGTTTGTGTAATCTTATCCTAATGGTGTCGCTTATATATATATATATATATCGTCTTGATCACCTAGCTTCGTAAAGAGAGATCAGCATATATGTTGTTCAATCACATCTGCATAGCATAATAATGCATGCATAGATTTTATATGTATCTCTTTCCGGTGCTGCTATGTGTATCTCTATATGATTAAATAAAAATACCAATGTTTTATAAAAAAAA ]
[-] EMBL BI118615 [ CATGGGCTCCTTTACCACACCACCTTGCACTGAGGGAGTCATCTGGACCGTTGTCAGGAAGGTGCGCACCGTGTCACTGTCCCAAATCACACTTCTCAAGGCAGCTGTGCTCACGGGTAACGAGAACAACGCGAGACCCCTTCAGGGCGTGAACAACAGGGAGATTGACCTGTTCCTTCCTCTCCCTCTGATCAACAACTGAACAGCATGCTTCACATACACAGCTGATTTACAACGCATCGCCTGACACACGCATGGAGAATCAGCAAA ]
[+] EMBL BI813406 [ atataTATATATATATATATATATCGTCTTGATCACCTAGCTTCGTAAAGAGAGATCAGCATATATGTTGTTCAATCACATCTGCATAGCATAATAATGCATGCATAGATTTTATATGTATCTCTTTCCGGTGCTGCTATGTGTATCTCTATATGATTAAATAAAAATACC ATGTTTTATAAAAAAAA ]
consensusID : consensus_9181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence
[TCTGCAAAGCTGGACTTATATATTGCGATATCAACCAGAAGGTAAAGAAGAGGATGGTTCTTGTGGGCGGATCCAAATGTAGCCAAGGGAAAGGATACGTGTACTATCGCTACATGGGCTCCTTTACCACACCACCTTGCACGGAGGGGGTCATCTGGACCGTTGTCAGGAAGGTGCACACCGTGTCACTGTCCCNAATCACACTTCTCAAGGCAGCTGTGCTCATGGGTAATGAGAACACGCGAGACCCCTCCAGGATGTGAACACAGGGAGATTGACCTGTTCTTTCCTCTTCCTCTGATCAATAACTGAACGACATGCTTGACCTACACAGTTGATTTACAACGTATCGCCTGACACACGCGCATGGAGAATCATCAAACATATATGTACTTATAAATATATAGTATTACTCATGTTTGTGTAAATCTCATCATCATGGTGTCACTTATATATATATATGTGTAAGTCCCTCGTTAGTCTTGATCACCTAGTTTAGTAAAGAGAGGAGCATATATATGTCGTTCAATCATATTTGCATAGCATAATAATGCATGCATAGTTTTTATATGTATCTCTTTCCGGTGCTGCTATGTATCTCTATACGATTAAATANAAATACCATGTTTTATAATTAAAAAAAA]
[+] EMBL BQ908858 [TCTGCAAAGCTGGACTTATATATTGCGATATCAACCAGAAGGTAAAGAAGAGGATGGTTCTTGTGGGCGGATCCAAATGTAGCCAAGGGAAAGGATACGTGTACTATCGCTACATGGGCTCCTTTACCACACCACCTTGCACGGAGGGGGTCATCTGGACCGTTGTCAGGAAGGTGCACACCGTGTCACTGTCCCNAATCACACTTCTCAAGGCAGCTGTGCTCATGGGTAATGAGAACACGCGAGACCCCTCCAGGATGTGAACACAGGGAGATTGACCTGTTCTTTCCTCTTCCTCTGATCAATAACTGAACGACATGCTTGACCTACACAGTTGATTTACAACGTATCGCCTGACACACGCGCATGGAGAATCATCAAACATATATGTACTTATAAATATATAGTATTACTCATGTTTGTGTAAATCTCATCATCATGGTGTCACTTATATATATATATGTGTAAGTCCCTCGTTAGTCTTGATCACCTAGTTTAGTAAAGAGAGGAGCATATATATGTCGTTCAATCATATTTGCATAGCATAATAATGCATGCATAGTTTTTATATGTATCTCTTTCCGGTGCTGCTATGTATCTCTATACGATTAAATANAAATACCATGTTTTATAATTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9181#0 CAGCCAGCCAAACAGTAGCAACATGAGTACTTCAGCTCGCCGCCTCCTCCTCCTCGCCGG 60
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 CGCCGCTGCCGCCATCGCACTCCTGCTCTCGGCCACTGCCCCGGTGGCCGGAGCCGAGGA 120
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 CGACGGCTACAGCTACATCCCTGGCTCACCCAGGGGGCCGCAGAACTGGGGCAGCCTGAA 180
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 GCCGGAATGGGCCACCTGCAGCAGCGGCAAGATGCAGTCGCCGATCAACCTCGGCCTCCT 240
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 CGACCTCACCTTGGCTCCCGGCCTCGGCAACCTCAACTACACCTACCAGAACGCCAACGC 300
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 CTCCGTCGTCAACCGTGGCCACGACATCATGGTCAGGTTTGACGGCGACGCCGGTAGCCT 360
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 AAAGATAAATGGCACGGCGTACCAGCTCCGGCAGATGCACTGGCACACGCCGTCGGAGCA 420
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 CACCATCGATGGCCGGAGGTACGACATGGAGCTGCACATGGTGCACCTCAACGCCCAGAA 480
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 CCAGGCCGCCGTCATTGGCATCCTCTACACCATCGGCACCCGGGACGAGTTTCTGCAAAA 540
consensus_9181#1 ---------------------------------------------------TCTGCAAA- 8
********
consensus_9181#0 GCTAGAGCCTTATATAATTGAGATATCAAAGCAAGAAGGCAAAGAGAGAGTGATCATTGG 600
consensus_9181#1 GCTGGA--CTTATATA-TTGCGATATCAA--CCAGAAGGTAAAGA-AGAG-GATGGTTCT 61
*** ** ******** *** ******** * ****** ***** **** *** **
consensus_9181#0 TGGGGGCGGATCCAAATGTAGCCAAGGGACAGGATACCGTGTACTACCGCTACATGGGCT 660
consensus_9181#1 TGTGGGCGGATCCAAATGTAGCCAAGGGAAAGGATAC-GTGTACTATCGCTACATGGGCT 120
** ************************** ******* ******** *************
consensus_9181#0 CCTTTACCACACCACCTTGCACTGAGGGAGTCATCTGGACCGTTGTCAGGAAGGTGCGCA 720
consensus_9181#1 CCTTTACCACACCACCTTGCACGGAGGGGGTCATCTGGACCGTTGTCAGGAAGGTGCACA 180
********************** ***** **************************** **
consensus_9181#0 CCGTGTCACTGTCCCAAATCACACTTCTCAAGGCAGCTGTGCTCACGGGTAACGAGAACA 780
consensus_9181#1 CCGTGTCACTGTCCCNAATCACACTTCTCAAGGCAGCTGTGCTCATGGGTAATGAGAACA 240
*************** ***************************** ****** *******
consensus_9181#0 ACGCGAGACCCCTTCAGGGCGTGAACAACAGGGAGATTGACCTGTTCCTTCCTCTCCCTC 840
consensus_9181#1 -CGCGAGACCCCTCCAGGATGTGAACA-CAGGGAGATTGACCTGTTCTTTCCTCTTCCTC 298
************ **** ******* ******************* ******* ****
consensus_9181#0 TCATCAACAACTGAACAGCATGCTTGACATACACAGCTGATTTACAACGCATCGCCTGAC 900
consensus_9181#1 TGATCAATAACTGAACGACATGCTTGACCTACACAGTTGATTTACAACGTATCGCCTGAC 358
* ***** ******** ********** ******* ************ **********
consensus_9181#0 ACACGC--ATGGAGAATCAGCAAACATATGTGTACTAATAAATATATAGTATTACTCATG 958
consensus_9181#1 ACACGCGCATGGAGAATCATCAAACATATATGTACTTATAAATATATAGTATTACTCATG 418
****** *********** ********* ****** ***********************
consensus_9181#0 TTTGTGTAA-TCTTATCCTAATGGTGTCGCTTATATATATATATATATA----------T 1007
consensus_9181#1 TTTGTGTAAATCTCATCATCATGGTGTCACTTATATATATATATGTGTAAGTCCCTCGTT 478
********* *** *** * ******** *************** * ** *
consensus_9181#0 CGTCTTGATCACCTAGCTTCGTAAAGAGAGATCAGCATATATGTTGTTCAATCACATCTG 1067
consensus_9181#1 AGTCTTGATCACCTAGTTTAGTAAAGAGAGGAGCATATATATGTCGTTCAATCATATTTG 538
*************** ** ********** ******** ********* ** **
consensus_9181#0 CATAGCATAATAATGCATGCATAGATTTTATATGTATCTCTTTCCGGTGCTGCTATGTGT 1127
consensus_9181#1 CATAGCATAATAATGCATGCATAGTTTTTATATGTATCTCTTTCCGGTGCTGCTATG--T 596
************************ ******************************** *
consensus_9181#0 ATCTCTATATGATTAAATAAAAATACCAATGTTTTATAAAAAAAAAAAAAAAA 1180
consensus_9181#1 ATCTCTATACGATTAAATANAAATACCA-TGTTTTATAATTAAAAAAAA---- 644
********* ********* ******** ********** ********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||