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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9182#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 930 fasta sequence
[CAAAAGGCCCAAACTCTCTCTCTCTCCCGCAAACAGCACAAAAAGGCAGCAGCTTTGCTCTGCTCGGGTGTTCCGCCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCTCCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTACGAAGATGTTGAACCTCTTTAAGATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAAGCAAAGTCCAGGAGAATTACGTCTCCATAAAGACATTGCTGAGCTTAATCTTCCAAAGAAAACCAACATTACTTTTCCTAATGGAAAGGATGATCTGATGAACATTGAGATTACTCTTCGGCCTGACGAAGGATACNTATGTGGGTGGAGCTTTTGTTTTCACTTTACAAGTTCCTCCTACTTACCCTCACGAGCCGCCCAAGGTCAAGTGCACGACTAAGGTTTATCACCCTAATATTGATTTGGACGGAAATGTCTGCCTGAATATCCTGCGTGAAGACTGGAAGCCTGTCTTGAATATCAATAC-CATT-GT-ATAT-GGTTT-GAACC-TTC-TTTTC-ATTC-AA-C-CCAATGACGA-GGAT-CCCTTGAA-CCATGATGC-TGCGGCTGTCCTCCGAGATGA-CCCACAAAAG-TTCCGGAGGAATGTTCAGACGGCGATGTCGGGAG-GCTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTA-CTCCTGAATACCGTTCTGCAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAATGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGTCAAATGATGTTTGGAACTTGGCAAAAAAAA]
[+] EMBL CF326859 [CAAAAGGCCCAAACTCTCTCTCTCTCCCGCAAACAGCACAAAAAGGCAGCAGCTTTGCTCTGCTCGGGTGTTCCGCCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCTCCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTACGAAGATGTTGAACCTCTTTAAGATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAAGCAAAGTCCAGGAGAATTACGTCTCCATAAAGACATTGCTGAGCTTAATCTTCCAAAGAAAACCAACATTACTTTTCCTAATGGAAAGGATGATCTGATGAACATTGAGATTACTCTTCGGCCTGACGAAGGATACNTATGTGGGTGGAGCTTTTGTTTTCACTTTACAAGTTCCTCCTACTTACCCTCACGAGCCGCCCAAGGTCAAGTGCACGACTAAGGTTTATCACCCTAATATTGATTTGGACGGAAATGTCTGCCTGAATATCCTGCGTGAAGACTGGAAGCCTGTCTTGAATATCAATAC CATT GT ATATGGGTTT GAACC TTC TTTTC ATTC AA C CCAATGACGA GGAT CCCTTG ]
[+] EMBL AK073821 [ CAAACAGCACAAAAAGGCAGCAGCTTTGCTCTGCTCGGGTGTTCCGCCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCTCCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTAC GATGTTGAACCTCTTTAAGATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAAGCAAAGTCCAGGAGAATTACGTCTCCATAAAGACATTGCTGAGCTTAATCTTCCAAAGAAAACCAACATTACTTTTCCTAATGGAAAGGATGATCTGATGAACATTGAGATTACTCTTCGGCCTGACGAAGGATAC TATGTGGGTGGAGCTTTTGTTTTCACTTTACAAGTTCCTCCTACTTACCCTCACGAGCCGCCCAAGGTCAAGTGCACGACTAAGGTTTATCACCCTAATATTGACTTGGACGGAAATGTCTGCCTGAATATCCTGCGTGAAGACTGGAAGCCTGTCTTGAATATCAATAC CATT GT ATAT GGTTT GAACC TTC TTTTC ATTC AA C CCAATGACGA GGAT CCCTTGAA CCATGATGC TGCGGCTGTCCTCCGAGATGA CCCACAAAAG TTCCGGAGGAATGTTCAGACGGCGATGTCGGGAG GCTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTA CTCCTGAATACCGTTCTGCAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAATGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGTCAAATGATGTTT ]
[+] EMBL C74337 [ CACAAAAAGGCAGCAGCTTTGCTCTGCTCGGGTGTTCCGNCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCTCCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTACGAAGATGTNGAACCTCTTTAAGATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAAGCA ]
[+] EMBL BI806782 [ TATCCTGCGTGAAGACTGGAAGCCTGTCTTGNATATCAATACGCATT GT ATAT GGTTTGGAACCATTC TTTTCTATTCTAA CGCCTATGACGA GGAT CCCTTGAA CCATGATGCGTGCGGCTGTCCTCCGAGATGA CCCAC AAAG TTCCGGAGGAATGTTCAGACGGCGATGTCGGGAGTGCTATGTCGACAGGGTGCATTTTCCAAGGTNTAAGTAAAGGTGTGTGTNTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTATCTCCTGAATACCGTTCTGCAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAATGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGTCAAATGATGTTTGGAACTTGGCAAAAAA ]
[+] EMBL AU172791 [ anacC CATTGGTAAAAG GGTTT GACCC TTCTTTTTC ATTC AACC CCAATGACGAGGGATCCCCTTGAACCCATGATGC TGCGGCTGTCNTCCGAGATGACCCCCCAAAAGTTTCCGGAGAAATGTTCAGACGGCGATGTCGGGAG GCTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTA CTCCTGAATACCGTTCTGCAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAATGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGTCAAATGATGTTTGGAACTTGGCAAAAAAAA]
consensusID : consensus_9182#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[ATCCCATTGTATATGGTTTGACCCTTTTTTTCATTCAACCCAATGACGAGGATCCCTTGACCCATGATGTTGCGGTTGTCCTCCGAGATGACCCCCAAAAGTTCCGGAGGAATGTTCAGACGGCAATGTCGGGAGGTTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGTTTTTGCCCCCCTTACTCTTGAATCCCGTTTTGCAATTTGAACAATGTGACTTGCCCAAAAAATGACATATTTGTGTTACATTTGAGTATGAATAATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAATTGAAATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF326858 [ATCCCATTGTATATGGTTTGACCCTTTTTTTCATTCAACCCAATGACGAGGATCCCTTGACCCATGATGTTGCGGTTGTCCTCCGAGATGACCCCCAAAAGTTCCGGAGGAATGTTCAGACGGCAATGTCGGGAGGTTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGTTTTTGCCCCCCTTACTCTTGAATCCCGTTTTGCAATTTGAACAATGTGACTTGCCCAAAAAATGACATATTTGTGTTACATTTGAGTATGAATAATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAATTGAAATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9182#0 CAAAAGGCCCAAACTCTCTCTCTCTCCCGCAAACAGCACAAAAAGGCAGCAGCTTTGCTC 60
consensus_9182#1 ------------------------------------------------------------
consensus_9182#0 TGCTCGGGTGTTCCGCCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCT 120
consensus_9182#1 ------------------------------------------------------------
consensus_9182#0 CCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTACGAAGATGTTGAACCTCTTTAA 180
consensus_9182#1 ------------------------------------------------------------
consensus_9182#0 GATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAA 240
consensus_9182#1 ------------------------------------------------------------
consensus_9182#0 GCAAAGTCCAGGAGAATTACGTCTCCATAAAGACATTGCTGAGCTTAATCTTCCAAAGAA 300
consensus_9182#1 ------------------------------------------------------------
consensus_9182#0 AACCAACATTACTTTTCCTAATGGAAAGGATGATCTGATGAACATTGAGATTACTCTTCG 360
consensus_9182#1 ------------------------------------------------------------
consensus_9182#0 GCCTGACGAAGGATACNTATGTGGGTGGAGCTTTTGTTTTCACTTTACAAGTTCCTCCTA 420
consensus_9182#1 ------------------------------------------------------------
consensus_9182#0 CTTACCCTCACGAGCCGCCCAAGGTCAAGTGCACGACTAAGGTTTATCACCCTAATATTG 480
consensus_9182#1 ------------------------------------------------------------
consensus_9182#0 ATTTGGACGGAAATGTCTGCCTGAATATCCTGCGTGAAGACTGGAAGCCTGTCTTGAATA 540
consensus_9182#1 ------------------------------------------------------------
consensus_9182#0 TCAATACCATTGTATATGGTTTGAACCTTCTTTTCATTCAACCCAATGACGAGGATCCCT 600
consensus_9182#1 ---ATCCCATTGTATATGGTTTGACCCTTTTTTTCATTCAACCCAATGACGAGGATCCCT 57
** ****************** **** ******************************
consensus_9182#0 TGAACCATGATGCTGCGGCTGTCCTCCGAGATGACCCACAAAAGTTCCGGAGGAATGTTC 660
consensus_9182#1 TGACCCATGATGTTGCGGTTGTCCTCCGAGATGACCCCCAAAAGTTCCGGAGGAATGTTC 117
*** ******** ***** ****************** **********************
consensus_9182#0 AGACGGCGATGTCGGGAGGCTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGT 720
consensus_9182#1 AGACGGCAATGTCGGGAGGTTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGT 177
******* *********** ****************************************
consensus_9182#0 GTGTGTTTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTACTCCTGAATACCGTTCTG 780
consensus_9182#1 GTGTGTTTGCTGGTGCTCTGTGGCTGGTTTTTGCCCCCCTTACTCTTGAATCCCGTTTTG 237
*************************** ** ***** ******** ***** ***** **
consensus_9182#0 CAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAA 840
consensus_9182#1 CAATTTGAACAATGTGACTTGCCCAAAAAATGACATATTTGTGTTACATTTGAGTATGAA 297
**** ********************* *********************************
consensus_9182#0 TGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGT 900
consensus_9182#1 TAATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAATTGAAATGT 357
* ************************************************* ********
consensus_9182#0 CAAATGATGTTTGGAACTTGGCAAAAAAAA 930
consensus_9182#1 CAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 385
**** * ** ******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||