|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1728 fasta sequence
[ACACAAGGAATTCAGACACAATGGTCCAAGAGGGCAAAACTTCATTTTTCCCAATGTTTGACAAAAATTATAATTTCTTCTTATGCTTACTTAC-AAGTAGGACGC-TTTCTACAAGGACTATTTTACACCATGATCAGATGAAAAAACCTTTAACTGAAAAAATGAAGTACATCTTGGAATGAACAAAAATATCAAAATTGTCCTTCAAACCATTGTTACCTGGCCTGAACTCCACTCACCGATAGCTGGTTCAGCGAAAAGGGTTACTTGCCTGAGTTTGACTTC-AAATATTAAGAACCTGAGCTGGTGCTCTTCGCATTCAACCCCTTTATGTTGATGAATGGGGGCTGGGTAGGCCAAGGAAGCTCATTGTTCCTACTACCCAACATCTCGACCACCTTCCACATCGGTGGCCTAAGGTTCGGTGAAGCTTGCGCACATAGTAGTCCAACATGGAACACCTTGAGAGCTCCCTCCTCCGTGCATTGCTCTCGGAGGTTTGGGTCCAATAGTTCCATCAGGGTGCCTTCATTGTAGTGCTTCCATATCAGTGACATGAGGGAATGCCCTTCTGCTGATGAAGCAACCGAGTTGAGGCTCTTCCGACCGGTGATGATCTCGAGGACTAGCACACCGTAGCTGTAGATGTCAGCCTTCTCTGTCAGTTGCCCATGGACAATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGGCCAGTGCTGAGGTGACTTTGATCTTCCATGAAGTTCCTCGCCAAACCGAAATCGGCAATCTTAGGCCTGAACCTCTCGTCCAACAGTACGTTACTTGCCTTTATGTCCCGATGTATGATCCTGATCTCAGAAGCATTGTGGAGATATGACAGACCCTCTGCAGTCCCAAGGATGATCTCGAACCGCCGTTCCCAATCCAATGCGGTCTTCTTGAATGCATCAAACAAGTAGTGATCAAGGCTGGTGTTGCAGAGGTACTCATAGACCAGGAGGCTCTCCGGTCCCTCGATGCTGCATCCGAGCAGCTTGACAAGATTCTTGTGCTGCACCTGACTGACAAGGCGCACC-TCGTTGAAGAACTGATCGGCCCACTC-CCGCGTGTTGAAGAAGAGGCGCTTTACGGCAATCTCCCGGCCGTCTAGTAGCACACCCTTGTAGACTGATCCATATCCACCCTGGCCAAGCTTGTTGATCTGATTAAAGTCGTCGGTCGCCTTGCACAATTCTTCATACTTGAAACTGAGCTGCGATGCGGCGATGGTGCGGATGATCTCACTAGAACCATCCATGTCATCATGGTGATCATTTCTTCTGTTCCTCATTTTTGCCCAGACCAATGCTATGCTGATGACAGCCAGTGCACAGAAGACTGAGGCGATCACCACGATAACTATGTGCCGTGTGGATGACCCGGCGGCGGCGGCGGCGTTCGCCGGCAAGTAGAACGGCTGCGTGGAGTACCTGACGACGCAGCCGGCGTTGAGCCCGTAGCCCTCGGCGGCGCGCGGCAGGCAGCGCCCGACGACGCGGTCGCGCGCGCTCGCCACGCACGCCGCGCACGCGGTGGCGTTCAGCGACCTCCAGCACTGCGCCGCCGCGTACACCCGCGGCGACACCGACGGCAACGCCGACGCCGACGACGACGACGACGCGCTGTAGTAGTAGTAGTCCCTGGCGCCCGGCGCGGACGCCGTGACGTTCCGCAGCAATGCGGCCGACGTCGCGGCGAAC]
[+] EMBL CB634890 [ACACAAGGAATTCAGACACAATGGTCCAAGAGGGCAAAACTTCATTTTTCCCAATGTTTGACAAAAATTATAATTTCTTCTTATGCTTACTTACAAAGTAGGACGCATTTCTACAAGGACTATTTTACACCATGATCAGATGAAAAAACCTTTAACTGAAAAAATGAAGTACATCTTGGAATGAACAAAAATATCAAAATTGTCCTTCAAACCATTGTTACCTGGCCTGAACTCCACTCACCGATAGCTGGTTCAGCGAAAAGGGTTACTTGCCTGAGTTTGACTTCAAAATATTAAGAACCTGAGCTGGTGCTCTTCGCATTCAACCCCTTTATGTTGATGAATGGGGGCTGGGTAGGCCAAGGAAGCTCATTGTTCCTACTACCCAACATCTCGACCACCTTCCACATC ]
[+] EMBL CB633297 [ TAAAATTTCTTCCTTTGCTTACTTAC AAGTAGGACGC TTTCTACAAGGACTATTTTACACCATGATCAGATGAAAGAACCTTTACCTGAAAAAATGAAGTACATCTTGGAATGAACAAAAATATCAAGATTGTCCTTCAGACCATTGTTACCTGGCCTGTACTCCACTCACCGATAGCTGGTTCAGCGAGAAGGGCGACTTGTCTGAGTTTGACTTC AAAGACGAAGAACCTGAGCTGGTGCTCTTCGCATTCGACCCCTTTATGTTGATGAATGGGGGCTGGGTAGGCCGAGGAAGCTCATTGTTCCTACTACCCAACATCTCGACCACCTTCCACATCGGTGGCCTAAGGTTCGGTGAAGCTTGCGCACATAGTAGTCCAACATGGAACACCTTGAGAGCTCCCTCCTCCGTGCATTGCTCTCGGAGGTTTGGGTCCAATAGTTCCATCAGGGTGCCTTCATTGTAGTGCTTCCATATCAGTGACATGAGGGAATGCCCTTCTGCTGATGAAGCAACCGAGTTGAGGCTCTTCCGACCGGTGATGATCTCGAGGACTAGCACACCGTAGCTGTAGATGTCAGCCTTCTCTGTCAGTTGCCCATGGACAATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGGCCAGTGCTGAGGTGACTTTGATCTTCCATGAAGTTCCTCGCCAAACCGAAATCGGCAATCTTAGGCCTGAACCTCTCGTCCAACAGTACGTTACTTGCCTTTATGTCCCGATGTAT ]
[+] EMBL CB627850 [ ACCGTATCTGTAGATGTCAGCCTTCTCTGTCAGTTGCCCATGGACAATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGGCCAGTGCTGAGGTGACTTTGATCTTCCATGAAGTTCCTCGCCAAACCGAAATCGGCAATCTTAGGCCTGAACCTCTCGTCCAACAGTACGTTACTTGCCTTTATGTCCCGATGTATGATCCTGATCTCAGAAGCATTGTGGAGATATGACAGACCCTCTGCAGTCCCAAGGATGATCTCGAACCGCCGTTCCCAATCCAATGCGGTCTTCTTGAATGCATCAAACAAGTAGTGATCAAGGCTGGTGTTGCAGAGGTACTCATAGACCAGGAGGCTCTCCGGTCCCTCGATGCTGCATCCGAGCAGCTTGACAAGATTCTTGTGCTGCACCTGACTGACAAGGCGCACC TCGTTGAAGAACTGATCGGCCCACTC CCGCGTGTTGAAGAAGAGGCGCTTTACGGCAATCTCCCGGCCGTCTAGTAGCACACCCTTGTAGACTGATCCATATCCACCCTGGCCAAGCTTGTTGATCTGATTAAAGTCGTCGGTCGCCTTGCACAATTCTTCATACTTGAAACTGAGCTGCGATGCGGCGATGGTGCGGATGATCTCACTAGAACCATCCATGTCATCATGGTGATCATTTCTTCTGTTCCTCATTTTTGCCCAGACCAATGCTATGCTGATGACAGCCAGTGCACAGAAGACTGAGGCGATCACCACGATAACTATGTGCCGTGTGGATGACCCGGCGGCGGCGGCGGCGTTCGCCGGCAAGTAGAACGGCTGCGTG ]
[-] EMBL CB627849 [ CGTTACTTGCCTTTATGTCCCGATGTATGATCCTGATCTCAGAAGCATTGTGGAGATATGACAGACCCTCTGCAGTCCCAAGGATGATCTCGAACCGCCGTTCCCAATCCAATGCGGTCTTCTTGAATGCATCAAACAAGTAGTGATCAAGGCTGGTGTTGCAGAGGTACTCATAGACCAGGAGGCTCTCCGGTCCCTCGATGCTGCATCCGAGCAGCTTGACAAGATTCTTGTGCTGCACCTGACTGACAAGGCGCACC TCGTTGAAGAACTGATCGGCCCACTC CCGCGTGTTGAAGAAGAGGCGCTTTACGGCAATCTCCCGGCCGTCTAGTAGCACACCCTTGTAGACTGATCCATATCCACCCTGGCCAAGCTTGTTGATCTGATTAAAGTCGTCGGTCGCCTTGCACAATTCTTCATACTTGAAACTGAGCTGCGATGCGGCGATGGTGCGGATGATCTCACTAGAACCATCCATGTCATCATGGTGATCATTTCTTCTGTTCCTCATTTTTGCCCAGACCAATGCTATGCTGATGACAGCCAGTGCACAGAAGACTGAGGCGATCACCACGATAACTATGTGCCGTGTGGATGACCCGGCGGCGGCGGCGGCGTTCGCCGGCAAGTAGAACGGCTGCGTGGAGTACCTGACGACGCAGCCGGCGTTGAGCCCGTAGCCCTCGGCGGCGCGCGGCAGGCAGCGCCCGACGACGCGGTCGCGCGCGCTCGCCACGCACGCCGCGCACGCGGTGGCGTTCAGCGACCTCCAGCACTGCGCCGCCGCGTACACCCGCGGCGACACC ]
[+] EMBL CB635247 [ cACTGAGAAGGCGCACCTTCGTTGAAGAACTGATCGGCCC CTCTCCGCGTGTTGAAGAAGAGGCGCTTTACGGCAATCTCCCGGCCGTCTAGTAGCACACCCTTGTAGACTGATCCATATCCACCCTGGCCAAGCTTGTTGATCTGATTAAAGTCGTCGGTCGCCTTGCACAATTCTTCATACTTGAAACTGAGCTGCGATGCGGCGATGGTGCGGATGATCTCACTAGAACCATCCATGTCATCATGGTGATCATTTCTTCTGTTCCTCATTTTTGCCCAGACCAATGCTATGCTGATGACAGCCAGTGCACAGAAGACTGAGGCGATCACCACGATAACTATGTGCCGTGTGGATGACCCGGCGGCGGCGGCGGCGTTCGCCGGCAAGTAGAACGGCTGCGTGGAGTACCTGACGACGCAGCCGGCGTTGAGCCCGTAGCCCTCGGCGGCGCGCGGCAGGCAGCGCCCGACGACGCGGTCGCGCGCGCTCGCCACGCACGCCGCGCACGCGGTGGCGTTCAGCGACCTCCAGCACTGCGCCGCCGCGTACACCCGCGGCGACACCGACGGCAACGCCGACGCCGACGACGACGACGACGCGCTGTAGTAGTAGTAGTCCCTGGCGCCCGGCGCGGACGCCGTGACGTTCCGCAGCAATGCGGCCGACGTCGCGGCGAAC]
consensusID : consensus_9188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[GTGCCCTCCATGCTCGCCGCCGCCATGCAACGCCGGGGCTCCTTGGCCGCCGCCGCTGCTGCGTTCCGGTGCCTCCTCCTCGTCGTCGTCGCCGCGGCGGCCGACGACGCCGGTGGCGCCGCGGCCACGCCGGTGATACTGGCCACGGTGTGCGGGAACACCACCGCGGCCGACCAGGAGGGCTTCGACGTCAGCTTCGTCAACACGCTGGAGCTCATCTACCAGAACGTCACGCGCTCCGGCTTCGGCGCCGCGGCCTCCGGCGAGGGCGTCGACACCGTCTACGGCCTCGGCCAGTGCATGGGCTACCTCTCGCCGACCGACTGCCAGCTCTGCTACGCGCAGAGCCGCGTCAAGCTGCCGCACTGCCTCCCGGCCACCGGCGGCCGGATCTACCTCGACGGCTGCTTCCTCCGCTACGGCGCCGACAACTTCACCGCCGCCGCCACCGACGCCAGCGACACCGCCGTCTGCTCCAACGCCACCGTCTCCTCGCCGGCGTCGTTCGCCGCGACGTCGGCCGCATTGCTGCGGAACGTCACGGCGGCCGCGCCGGGCGCCAGGGACTACTACTACTACAGCGCGTCGTCGTCGTCGTCGGTGGACNATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGGCCAGTGCTGAAGTGACTTTGATCTTCCATGAAGTTCCTCGCC]
[+] EMBL CB633296 [GTGCCCTCCATGCTCGCCGCCGCCATGCAACGCCGGGGCTCCTTGGCCGCCGCCGCTGCTGCGTTCCGGTGCCTCCTCCTCGTCGTCGTCGCCGCGGCGGCCGACGACGCCGGTGGCGCCGCGGCCACGCCGGTGATACTGGCCACGGTGTGCGGGAACACCACCGCGGCCGACCAGGAGGGCTTCGACGTCAGCTTCGTCAACACGCTGGAGCTCATCTACCAGAACGTCACGCGCTCCGGCTTCGGCGCCGCGGCCTCCGGCGAGGGCGTCGACACCGTCTACGGCCTCGGCCAGTGCATGGGCTACCTCTCGCCGACCGACTGCCAGCTCTGCTACGCGCAGAGCCGCGTCAAGCTGCCGCACTGCCTCCCGGCCACCGGCGGCCGGATCTACCTCGACGGCTGCTTCCTCCGCTACGGCGCCGACAACTTCACCGCCGCCGCCACCGACGCCAGCGACACCGCCGTCTGCTCCAACGCCACCGTCTCCTCGCCGGCGTCGTTCGCCGCGACGTCGGCCGCATTGCTGCGGAACGTCACGGCGGCCGCGCCGGGCGCCAGGGACTACTACTACTACAGCGCGTCGTCGTCGTCGTCGGTGGACNATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGGCCAGTGCTGAAGTGACTTTGATCTTCCATGAAGTTCCTCGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9188#0 ACACAAGGAATTCAGACACAATGGTCCAAGAGGGCAAAACTTCATTTTTCCCAATGTTTG 60
consensus_9188#1 --------------------------------------------GTGCCCTCCATGCTCG 16
* * * *** * *
consensus_9188#0 ACAAAAAT-TATAATTTCTTCTTATGCTTACTTACAAGTAGGACGCTTTCTACAAGGACT 119
consensus_9188#1 CCGCCGCCATGCAACGCCGGGGCTCCTTGGCCGCCGCCGCTGCTGCGTTC--CGGTGCCT 74
* * ** * * * * * ** *** * * **
consensus_9188#0 ATTTTACACCATGATCAGATGAAAAAACCTTTAACTGAAAAAATGAAGTACATCTTGGAA 179
consensus_9188#1 CCTCCTCGTCGTCGTC-GCCGCGGCGGCC---GACGACGCCGGTGGCGC-CGCGGCCACG 129
* * * * ** * * ** ** ** * *
consensus_9188#0 TGAACAAAAATATCAAAATTGTCCTTCAA-ACCATTGTTACCTGGCCTGAACTCCACTCA 238
consensus_9188#1 CCGGTGATACTGGCCACGGTGTGCGGGAACACCACCGCGGCC-GACCAGGAGGGC-TTCG 187
* * * * * *** * ** **** * ** * ** * * * **
consensus_9188#0 CCGATAGCTGGTTCAGCGAAAAGGGTTACTTGCCTGAGTTTGACTTCAAATATTAAGAAC 298
consensus_9188#1 ACGTCAGCTTCGTCAACACGCTGGA--GCTCATCT-ACCAGAACGTCACGCGCTCCGGCT 244
** **** *** * ** ** ** * ** *** * *
consensus_9188#0 CTGAGCTGGTGCTCTTCGCATTCAACCCCTTTATGTTGATGAATGGGGGCTGGGTAGGCC 358
consensus_9188#1 TCGGCGCCGCGGCCTCCGG--CGAGGGCGTCGACACCGTC---TACGGCCTCGGCCAGTG 299
* * * ** ** * * * * * * ** ** ** *
consensus_9188#0 AAGGAAGCTCATTGTTCCTACTACCCAACATCTCGACCACCTTCCACATCGGTGGCCTAA 418
consensus_9188#1 CATGGGCTACCTCTCGCCGACCGACTGCCAGCTCTGCTAC---GCGCAGAGCCGCGTCAA 356
* * * * ** ** * ** *** * ** * ** * * **
consensus_9188#0 GGTTCGGTGAAGCTTGCGCACATAGTAGTCCAACATGGAACACCTTGAGAGCTCCCTCCT 478
consensus_9188#1 GCTGCCGCACTGCCTCC-CGGCCACCGG--CGGCCGGATCTACCTCGACGGCTGCTTCCT 413
* * * * ** * * * * * * * * **** ** *** * ****
consensus_9188#0 CCGTGCATTGCTCTCGGAGGTTTGGGTCCAATAGTTCCATCAG-GGTGCCTTCATTGTAG 537
consensus_9188#1 CCGC-TACGGCGCCGACAACTTCACCGCCGCCGCCACCGACGCCAGCGACACCGCCGTC- 471
*** * ** * * ** ** ** * * * * * **
consensus_9188#0 TGCTTCCATATCAGTGACATGAGGGAATGCCCTTCTGCTGATGAAGCAACCGAGTTGAGG 597
consensus_9188#1 TGCTCCAACGCCACCGTCTCCTCGCCGGCGTCGTTCGCCGCGACGTCGGCCGCATTGCTG 531
**** * * ** * * * * * ** * * *** *** *
consensus_9188#0 CTCTTCCGACCGGTGATGATCTCGAGGACTAGCACACCGTAGCTGTAGATGTCAGCCTTC 657
consensus_9188#1 CGGAACGTCACGGCGGCCGCGCCGGGCGCCAG-GGACTACTACTACTACAGCGCGTCGTC 590
* * *** * ** * * ** ** ** * * * **
consensus_9188#0 TCTGTCAGTTGCCCATGGACAATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGG 717
consensus_9188#1 GTCGTC----GTCGGTGGACNATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGG 646
*** * * ***** ***************************************
consensus_9188#0 CCAGTGCTGAGGTGACTTTGATCTTCCATGAAGTTCCTCGCCAAACCGAAATCGGCAATC 777
consensus_9188#1 CCAGTGCTGAAGTGACTTTGATCTTCCATGAAGTTCCTCGCC------------------ 688
********** *******************************
consensus_9188#0 TTAGGCCTGAACCTCTCGTCCAACAGTACGTTACTTGCCTTTATGTCCCGATGTATGATC 837
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 CTGATCTCAGAAGCATTGTGGAGATATGACAGACCCTCTGCAGTCCCAAGGATGATCTCG 897
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 AACCGCCGTTCCCAATCCAATGCGGTCTTCTTGAATGCATCAAACAAGTAGTGATCAAGG 957
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 CTGGTGTTGCAGAGGTACTCATAGACCAGGAGGCTCTCCGGTCCCTCGATGCTGCATCCG 1017
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 AGCAGCTTGACAAGATTCTTGTGCTGCACCTGACTGACAAGGCGCACCTCGTTGAAGAAC 1077
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 TGATCGGCCCACTCCCGCGTGTTGAAGAAGAGGCGCTTTACGGCAATCTCCCGGCCGTCT 1137
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 AGTAGCACACCCTTGTAGACTGATCCATATCCACCCTGGCCAAGCTTGTTGATCTGATTA 1197
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 AAGTCGTCGGTCGCCTTGCACAATTCTTCATACTTGAAACTGAGCTGCGATGCGGCGATG 1257
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 GTGCGGATGATCTCACTAGAACCATCCATGTCATCATGGTGATCATTTCTTCTGTTCCTC 1317
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 ATTTTTGCCCAGACCAATGCTATGCTGATGACAGCCAGTGCACAGAAGACTGAGGCGATC 1377
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 ACCACGATAACTATGTGCCGTGTGGATGACCCGGCGGCGGCGGCGGCGTTCGCCGGCAAG 1437
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 TAGAACGGCTGCGTGGAGTACCTGACGACGCAGCCGGCGTTGAGCCCGTAGCCCTCGGCG 1497
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 GCGCGCGGCAGGCAGCGCCCGACGACGCGGTCGCGCGCGCTCGCCACGCACGCCGCGCAC 1557
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 GCGGTGGCGTTCAGCGACCTCCAGCACTGCGCCGCCGCGTACACCCGCGGCGACACCGAC 1617
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 GGCAACGCCGACGCCGACGACGACGACGACGCGCTGTAGTAGTAGTAGTCCCTGGCGCCC 1677
consensus_9188#1 ------------------------------------------------------------
consensus_9188#0 GGCGCGGACGCCGTGACGTTCCGCAGCAATGCGGCCGACGTCGCGGCGAAC 1728
consensus_9188#1 ---------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||