These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1728 fasta sequence [ACACAAGGAATTCAGACACAATGGTCCAAGAGGGCAAAACTTCATTTTTCCCAATGTTTGACAAAAATTATAATTTCTTCTTATGCTTACTTAC-AAGTAGGACGC-TTTCTACAAGGACTATTTTACACCATGATCAGATGAAAAAACCTTTAACTGAAAAAATGAAGTACATCTTGGAATGAACAAAAATATCAAAATTGTCCTTCAAACCATTGTTACCTGGCCTGAACTCCACTCACCGATAGCTGGTTCAGCGAAAAGGGTTACTTGCCTGAGTTTGACTTC-AAATATTAAGAACCTGAGCTGGTGCTCTTCGCATTCAACCCCTTTATGTTGATGAATGGGGGCTGGGTAGGCCAAGGAAGCTCATTGTTCCTACTACCCAACATCTCGACCACCTTCCACATCGGTGGCCTAAGGTTCGGTGAAGCTTGCGCACATAGTAGTCCAACATGGAACACCTTGAGAGCTCCCTCCTCCGTGCATTGCTCTCGGAGGTTTGGGTCCAATAGTTCCATCAGGGTGCCTTCATTGTAGTGCTTCCATATCAGTGACATGAGGGAATGCCCTTCTGCTGATGAAGCAACCGAGTTGAGGCTCTTCCGACCGGTGATGATCTCGAGGACTAGCACACCGTAGCTGTAGATGTCAGCCTTCTCTGTCAGTTGCCCATGGACAATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGGCCAGTGCTGAGGTGACTTTGATCTTCCATGAAGTTCCTCGCCAAACCGAAATCGGCAATCTTAGGCCTGAACCTCTCGTCCAACAGTACGTTACTTGCCTTTATGTCCCGATGTATGATCCTGATCTCAGAAGCATTGTGGAGATATGACAGACCCTCTGCAGTCCCAAGGATGATCTCGAACCGCCGTTCCCAATCCAATGCGGTCTTCTTGAATGCATCAAACAAGTAGTGATCAAGGCTGGTGTTGCAGAGGTACTCATAGACCAGGAGGCTCTCCGGTCCCTCGATGCTGCATCCGAGCAGCTTGACAAGATTCTTGTGCTGCACCTGACTGACAAGGCGCACC-TCGTTGAAGAACTGATCGGCCCACTC-CCGCGTGTTGAAGAAGAGGCGCTTTACGGCAATCTCCCGGCCGTCTAGTAGCACACCCTTGTAGACTGATCCATATCCACCCTGGCCAAGCTTGTTGATCTGATTAAAGTCGTCGGTCGCCTTGCACAATTCTTCATACTTGAAACTGAGCTGCGATGCGGCGATGGTGCGGATGATCTCACTAGAACCATCCATGTCATCATGGTGATCATTTCTTCTGTTCCTCATTTTTGCCCAGACCAATGCTATGCTGATGACAGCCAGTGCACAGAAGACTGAGGCGATCACCACGATAACTATGTGCCGTGTGGATGACCCGGCGGCGGCGGCGGCGTTCGCCGGCAAGTAGAACGGCTGCGTGGAGTACCTGACGACGCAGCCGGCGTTGAGCCCGTAGCCCTCGGCGGCGCGCGGCAGGCAGCGCCCGACGACGCGGTCGCGCGCGCTCGCCACGCACGCCGCGCACGCGGTGGCGTTCAGCGACCTCCAGCACTGCGCCGCCGCGTACACCCGCGGCGACACCGACGGCAACGCCGACGCCGACGACGACGACGACGCGCTGTAGTAGTAGTAGTCCCTGGCGCCCGGCGCGGACGCCGTGACGTTCCGCAGCAATGCGGCCGACGTCGCGGCGAAC] [+] EMBL CB634890 [ACACAAGGAATTCAGACACAATGGTCCAAGAGGGCAAAACTTCATTTTTCCCAATGTTTGACAAAAATTATAATTTCTTCTTATGCTTACTTACAAAGTAGGACGCATTTCTACAAGGACTATTTTACACCATGATCAGATGAAAAAACCTTTAACTGAAAAAATGAAGTACATCTTGGAATGAACAAAAATATCAAAATTGTCCTTCAAACCATTGTTACCTGGCCTGAACTCCACTCACCGATAGCTGGTTCAGCGAAAAGGGTTACTTGCCTGAGTTTGACTTCAAAATATTAAGAACCTGAGCTGGTGCTCTTCGCATTCAACCCCTTTATGTTGATGAATGGGGGCTGGGTAGGCCAAGGAAGCTCATTGTTCCTACTACCCAACATCTCGACCACCTTCCACATC ] [+] EMBL CB633297 [ TAAAATTTCTTCCTTTGCTTACTTAC AAGTAGGACGC TTTCTACAAGGACTATTTTACACCATGATCAGATGAAAGAACCTTTACCTGAAAAAATGAAGTACATCTTGGAATGAACAAAAATATCAAGATTGTCCTTCAGACCATTGTTACCTGGCCTGTACTCCACTCACCGATAGCTGGTTCAGCGAGAAGGGCGACTTGTCTGAGTTTGACTTC AAAGACGAAGAACCTGAGCTGGTGCTCTTCGCATTCGACCCCTTTATGTTGATGAATGGGGGCTGGGTAGGCCGAGGAAGCTCATTGTTCCTACTACCCAACATCTCGACCACCTTCCACATCGGTGGCCTAAGGTTCGGTGAAGCTTGCGCACATAGTAGTCCAACATGGAACACCTTGAGAGCTCCCTCCTCCGTGCATTGCTCTCGGAGGTTTGGGTCCAATAGTTCCATCAGGGTGCCTTCATTGTAGTGCTTCCATATCAGTGACATGAGGGAATGCCCTTCTGCTGATGAAGCAACCGAGTTGAGGCTCTTCCGACCGGTGATGATCTCGAGGACTAGCACACCGTAGCTGTAGATGTCAGCCTTCTCTGTCAGTTGCCCATGGACAATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGGCCAGTGCTGAGGTGACTTTGATCTTCCATGAAGTTCCTCGCCAAACCGAAATCGGCAATCTTAGGCCTGAACCTCTCGTCCAACAGTACGTTACTTGCCTTTATGTCCCGATGTAT ] [+] EMBL CB627850 [ ACCGTATCTGTAGATGTCAGCCTTCTCTGTCAGTTGCCCATGGACAATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGGCCAGTGCTGAGGTGACTTTGATCTTCCATGAAGTTCCTCGCCAAACCGAAATCGGCAATCTTAGGCCTGAACCTCTCGTCCAACAGTACGTTACTTGCCTTTATGTCCCGATGTATGATCCTGATCTCAGAAGCATTGTGGAGATATGACAGACCCTCTGCAGTCCCAAGGATGATCTCGAACCGCCGTTCCCAATCCAATGCGGTCTTCTTGAATGCATCAAACAAGTAGTGATCAAGGCTGGTGTTGCAGAGGTACTCATAGACCAGGAGGCTCTCCGGTCCCTCGATGCTGCATCCGAGCAGCTTGACAAGATTCTTGTGCTGCACCTGACTGACAAGGCGCACC TCGTTGAAGAACTGATCGGCCCACTC CCGCGTGTTGAAGAAGAGGCGCTTTACGGCAATCTCCCGGCCGTCTAGTAGCACACCCTTGTAGACTGATCCATATCCACCCTGGCCAAGCTTGTTGATCTGATTAAAGTCGTCGGTCGCCTTGCACAATTCTTCATACTTGAAACTGAGCTGCGATGCGGCGATGGTGCGGATGATCTCACTAGAACCATCCATGTCATCATGGTGATCATTTCTTCTGTTCCTCATTTTTGCCCAGACCAATGCTATGCTGATGACAGCCAGTGCACAGAAGACTGAGGCGATCACCACGATAACTATGTGCCGTGTGGATGACCCGGCGGCGGCGGCGGCGTTCGCCGGCAAGTAGAACGGCTGCGTG ] [-] EMBL CB627849 [ CGTTACTTGCCTTTATGTCCCGATGTATGATCCTGATCTCAGAAGCATTGTGGAGATATGACAGACCCTCTGCAGTCCCAAGGATGATCTCGAACCGCCGTTCCCAATCCAATGCGGTCTTCTTGAATGCATCAAACAAGTAGTGATCAAGGCTGGTGTTGCAGAGGTACTCATAGACCAGGAGGCTCTCCGGTCCCTCGATGCTGCATCCGAGCAGCTTGACAAGATTCTTGTGCTGCACCTGACTGACAAGGCGCACC TCGTTGAAGAACTGATCGGCCCACTC CCGCGTGTTGAAGAAGAGGCGCTTTACGGCAATCTCCCGGCCGTCTAGTAGCACACCCTTGTAGACTGATCCATATCCACCCTGGCCAAGCTTGTTGATCTGATTAAAGTCGTCGGTCGCCTTGCACAATTCTTCATACTTGAAACTGAGCTGCGATGCGGCGATGGTGCGGATGATCTCACTAGAACCATCCATGTCATCATGGTGATCATTTCTTCTGTTCCTCATTTTTGCCCAGACCAATGCTATGCTGATGACAGCCAGTGCACAGAAGACTGAGGCGATCACCACGATAACTATGTGCCGTGTGGATGACCCGGCGGCGGCGGCGGCGTTCGCCGGCAAGTAGAACGGCTGCGTGGAGTACCTGACGACGCAGCCGGCGTTGAGCCCGTAGCCCTCGGCGGCGCGCGGCAGGCAGCGCCCGACGACGCGGTCGCGCGCGCTCGCCACGCACGCCGCGCACGCGGTGGCGTTCAGCGACCTCCAGCACTGCGCCGCCGCGTACACCCGCGGCGACACC ] [+] EMBL CB635247 [ cACTGAGAAGGCGCACCTTCGTTGAAGAACTGATCGGCCC CTCTCCGCGTGTTGAAGAAGAGGCGCTTTACGGCAATCTCCCGGCCGTCTAGTAGCACACCCTTGTAGACTGATCCATATCCACCCTGGCCAAGCTTGTTGATCTGATTAAAGTCGTCGGTCGCCTTGCACAATTCTTCATACTTGAAACTGAGCTGCGATGCGGCGATGGTGCGGATGATCTCACTAGAACCATCCATGTCATCATGGTGATCATTTCTTCTGTTCCTCATTTTTGCCCAGACCAATGCTATGCTGATGACAGCCAGTGCACAGAAGACTGAGGCGATCACCACGATAACTATGTGCCGTGTGGATGACCCGGCGGCGGCGGCGGCGTTCGCCGGCAAGTAGAACGGCTGCGTGGAGTACCTGACGACGCAGCCGGCGTTGAGCCCGTAGCCCTCGGCGGCGCGCGGCAGGCAGCGCCCGACGACGCGGTCGCGCGCGCTCGCCACGCACGCCGCGCACGCGGTGGCGTTCAGCGACCTCCAGCACTGCGCCGCCGCGTACACCCGCGGCGACACCGACGGCAACGCCGACGCCGACGACGACGACGACGCGCTGTAGTAGTAGTAGTCCCTGGCGCCCGGCGCGGACGCCGTGACGTTCCGCAGCAATGCGGCCGACGTCGCGGCGAAC] consensusID : consensus_9188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [GTGCCCTCCATGCTCGCCGCCGCCATGCAACGCCGGGGCTCCTTGGCCGCCGCCGCTGCTGCGTTCCGGTGCCTCCTCCTCGTCGTCGTCGCCGCGGCGGCCGACGACGCCGGTGGCGCCGCGGCCACGCCGGTGATACTGGCCACGGTGTGCGGGAACACCACCGCGGCCGACCAGGAGGGCTTCGACGTCAGCTTCGTCAACACGCTGGAGCTCATCTACCAGAACGTCACGCGCTCCGGCTTCGGCGCCGCGGCCTCCGGCGAGGGCGTCGACACCGTCTACGGCCTCGGCCAGTGCATGGGCTACCTCTCGCCGACCGACTGCCAGCTCTGCTACGCGCAGAGCCGCGTCAAGCTGCCGCACTGCCTCCCGGCCACCGGCGGCCGGATCTACCTCGACGGCTGCTTCCTCCGCTACGGCGCCGACAACTTCACCGCCGCCGCCACCGACGCCAGCGACACCGCCGTCTGCTCCAACGCCACCGTCTCCTCGCCGGCGTCGTTCGCCGCGACGTCGGCCGCATTGCTGCGGAACGTCACGGCGGCCGCGCCGGGCGCCAGGGACTACTACTACTACAGCGCGTCGTCGTCGTCGTCGGTGGACNATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGGCCAGTGCTGAAGTGACTTTGATCTTCCATGAAGTTCCTCGCC] [+] EMBL CB633296 [GTGCCCTCCATGCTCGCCGCCGCCATGCAACGCCGGGGCTCCTTGGCCGCCGCCGCTGCTGCGTTCCGGTGCCTCCTCCTCGTCGTCGTCGCCGCGGCGGCCGACGACGCCGGTGGCGCCGCGGCCACGCCGGTGATACTGGCCACGGTGTGCGGGAACACCACCGCGGCCGACCAGGAGGGCTTCGACGTCAGCTTCGTCAACACGCTGGAGCTCATCTACCAGAACGTCACGCGCTCCGGCTTCGGCGCCGCGGCCTCCGGCGAGGGCGTCGACACCGTCTACGGCCTCGGCCAGTGCATGGGCTACCTCTCGCCGACCGACTGCCAGCTCTGCTACGCGCAGAGCCGCGTCAAGCTGCCGCACTGCCTCCCGGCCACCGGCGGCCGGATCTACCTCGACGGCTGCTTCCTCCGCTACGGCGCCGACAACTTCACCGCCGCCGCCACCGACGCCAGCGACACCGCCGTCTGCTCCAACGCCACCGTCTCCTCGCCGGCGTCGTTCGCCGCGACGTCGGCCGCATTGCTGCGGAACGTCACGGCGGCCGCGCCGGGCGCCAGGGACTACTACTACTACAGCGCGTCGTCGTCGTCGTCGGTGGACNATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGGCCAGTGCTGAAGTGACTTTGATCTTCCATGAAGTTCCTCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9188#0 ACACAAGGAATTCAGACACAATGGTCCAAGAGGGCAAAACTTCATTTTTCCCAATGTTTG 60 consensus_9188#1 --------------------------------------------GTGCCCTCCATGCTCG 16 * * * *** * * consensus_9188#0 ACAAAAAT-TATAATTTCTTCTTATGCTTACTTACAAGTAGGACGCTTTCTACAAGGACT 119 consensus_9188#1 CCGCCGCCATGCAACGCCGGGGCTCCTTGGCCGCCGCCGCTGCTGCGTTC--CGGTGCCT 74 * * ** * * * * * ** *** * * ** consensus_9188#0 ATTTTACACCATGATCAGATGAAAAAACCTTTAACTGAAAAAATGAAGTACATCTTGGAA 179 consensus_9188#1 CCTCCTCGTCGTCGTC-GCCGCGGCGGCC---GACGACGCCGGTGGCGC-CGCGGCCACG 129 * * * * ** * * ** ** ** * * consensus_9188#0 TGAACAAAAATATCAAAATTGTCCTTCAA-ACCATTGTTACCTGGCCTGAACTCCACTCA 238 consensus_9188#1 CCGGTGATACTGGCCACGGTGTGCGGGAACACCACCGCGGCC-GACCAGGAGGGC-TTCG 187 * * * * * *** * ** **** * ** * ** * * * ** consensus_9188#0 CCGATAGCTGGTTCAGCGAAAAGGGTTACTTGCCTGAGTTTGACTTCAAATATTAAGAAC 298 consensus_9188#1 ACGTCAGCTTCGTCAACACGCTGGA--GCTCATCT-ACCAGAACGTCACGCGCTCCGGCT 244 ** **** *** * ** ** ** * ** *** * * consensus_9188#0 CTGAGCTGGTGCTCTTCGCATTCAACCCCTTTATGTTGATGAATGGGGGCTGGGTAGGCC 358 consensus_9188#1 TCGGCGCCGCGGCCTCCGG--CGAGGGCGTCGACACCGTC---TACGGCCTCGGCCAGTG 299 * * * ** ** * * * * * * ** ** ** * consensus_9188#0 AAGGAAGCTCATTGTTCCTACTACCCAACATCTCGACCACCTTCCACATCGGTGGCCTAA 418 consensus_9188#1 CATGGGCTACCTCTCGCCGACCGACTGCCAGCTCTGCTAC---GCGCAGAGCCGCGTCAA 356 * * * * ** ** * ** *** * ** * ** * * ** consensus_9188#0 GGTTCGGTGAAGCTTGCGCACATAGTAGTCCAACATGGAACACCTTGAGAGCTCCCTCCT 478 consensus_9188#1 GCTGCCGCACTGCCTCC-CGGCCACCGG--CGGCCGGATCTACCTCGACGGCTGCTTCCT 413 * * * * ** * * * * * * * * **** ** *** * **** consensus_9188#0 CCGTGCATTGCTCTCGGAGGTTTGGGTCCAATAGTTCCATCAG-GGTGCCTTCATTGTAG 537 consensus_9188#1 CCGC-TACGGCGCCGACAACTTCACCGCCGCCGCCACCGACGCCAGCGACACCGCCGTC- 471 *** * ** * * ** ** ** * * * * * ** consensus_9188#0 TGCTTCCATATCAGTGACATGAGGGAATGCCCTTCTGCTGATGAAGCAACCGAGTTGAGG 597 consensus_9188#1 TGCTCCAACGCCACCGTCTCCTCGCCGGCGTCGTTCGCCGCGACGTCGGCCGCATTGCTG 531 **** * * ** * * * * * ** * * *** *** * consensus_9188#0 CTCTTCCGACCGGTGATGATCTCGAGGACTAGCACACCGTAGCTGTAGATGTCAGCCTTC 657 consensus_9188#1 CGGAACGTCACGGCGGCCGCGCCGGGCGCCAG-GGACTACTACTACTACAGCGCGTCGTC 590 * * *** * ** * * ** ** ** * * * ** consensus_9188#0 TCTGTCAGTTGCCCATGGACAATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGG 717 consensus_9188#1 GTCGTC----GTCGGTGGACNATGTATTCAGGAGCCATATATCCAAAAGTTCCCGCGAGG 646 *** * * ***** *************************************** consensus_9188#0 CCAGTGCTGAGGTGACTTTGATCTTCCATGAAGTTCCTCGCCAAACCGAAATCGGCAATC 777 consensus_9188#1 CCAGTGCTGAAGTGACTTTGATCTTCCATGAAGTTCCTCGCC------------------ 688 ********** ******************************* consensus_9188#0 TTAGGCCTGAACCTCTCGTCCAACAGTACGTTACTTGCCTTTATGTCCCGATGTATGATC 837 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 CTGATCTCAGAAGCATTGTGGAGATATGACAGACCCTCTGCAGTCCCAAGGATGATCTCG 897 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 AACCGCCGTTCCCAATCCAATGCGGTCTTCTTGAATGCATCAAACAAGTAGTGATCAAGG 957 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 CTGGTGTTGCAGAGGTACTCATAGACCAGGAGGCTCTCCGGTCCCTCGATGCTGCATCCG 1017 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 AGCAGCTTGACAAGATTCTTGTGCTGCACCTGACTGACAAGGCGCACCTCGTTGAAGAAC 1077 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 TGATCGGCCCACTCCCGCGTGTTGAAGAAGAGGCGCTTTACGGCAATCTCCCGGCCGTCT 1137 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 AGTAGCACACCCTTGTAGACTGATCCATATCCACCCTGGCCAAGCTTGTTGATCTGATTA 1197 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 AAGTCGTCGGTCGCCTTGCACAATTCTTCATACTTGAAACTGAGCTGCGATGCGGCGATG 1257 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 GTGCGGATGATCTCACTAGAACCATCCATGTCATCATGGTGATCATTTCTTCTGTTCCTC 1317 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 ATTTTTGCCCAGACCAATGCTATGCTGATGACAGCCAGTGCACAGAAGACTGAGGCGATC 1377 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 ACCACGATAACTATGTGCCGTGTGGATGACCCGGCGGCGGCGGCGGCGTTCGCCGGCAAG 1437 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 TAGAACGGCTGCGTGGAGTACCTGACGACGCAGCCGGCGTTGAGCCCGTAGCCCTCGGCG 1497 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 GCGCGCGGCAGGCAGCGCCCGACGACGCGGTCGCGCGCGCTCGCCACGCACGCCGCGCAC 1557 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 GCGGTGGCGTTCAGCGACCTCCAGCACTGCGCCGCCGCGTACACCCGCGGCGACACCGAC 1617 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 GGCAACGCCGACGCCGACGACGACGACGACGCGCTGTAGTAGTAGTAGTCCCTGGCGCCC 1677 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 GGCGCGGACGCCGTGACGTTCCGCAGCAATGCGGCCGACGTCGCGGCGAAC 1728 consensus_9188#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||