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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1688 fasta sequence
[GACAAGGCTGAATATTGGTCTTCAGCAAATTGAAGGTACAGCGACAGTATCTGAATCTGGAAGCAATACTCCTAGTATTGCTGAAGGCCTGTATGAACCTCATAGTCAAGCAGAGAGTTGGCAGGATGATTTGGAACAAGAGAGAAGAGATTGGGAACAATTTTCCCATGCTATTACTGGAGAGGAATCTGAAATAAATTGGCATGAAAATACGTACAATGGTTCATCTCATGAGGGTACCGAAGTTGAAGGTGGTCAAGATGCACATATTCCAGAATCACATGATGAGTTAGCTAGTGACAATCTTCCTCCTCAATCTCATGGAGAACAGCAGGACAATAGCCATCTTCCCGAGGAGAATGAAGAGCTGCATGACAGTGATCTTCAACAATCTCGTGGAGAGTGGAATGAGGGCAGTAATCCATTTATTCCTACAGAAGTACACAACGAGTGGCACAGCGATGATCATTTCCAAGGAGTAAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGACAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGTCCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAGAAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGAAAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGTGCTCCTCTCTCTTGGGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAGAGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACCTCCGCCTATACCTCCTCGCCAGCCACTTTGGCATTCGGAGTTGCATCGTAATAACTGGATCAGACAAAACATACATCGCTCTGATATTGAATGGGAGGCTATTAATGACTTAAGGGCTGATATGGCTAGGCTTCAGCAGGGCATGAGTCATATGCAAAGAATGTTGGAAGCTTGTATGGACATGCAGCTCGAGTTACAGCGATCTGTAAGGCAGGAAGTTTCTGCAGCCTTGAATCGCTTCATCGGGGAGCAAGGTGAAAGTAAAGAAACTATAGACGATGGATCAAAATGGATCCATGTGAGAAAAGGGACGTGCTGTATATGCTGTGATACTCCGATTGACTCTCTTTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGCGCGAATGAGTTGGTTCGAAGCGGAGGGAAATGCCCGCTGTGCCGTGCACCCATAATTGAGGTGATCCGAGCATACTTCATCATGTAGATACAGAGAGAAAGGAAGATAAAGAAGAAGAAATGTTTTTTTCTTTTCTTTTTCCTACTTAGAGCTTGTAGGTGTTAGTGGATGTATGATTATATTCAATTTTAGCTATGCCCTATGCCTGTGTTGTCTTGTGTGTCTCTTGTCTCTGATGAGTTCCATTGTTTTGTTAGATTGGGGCCCTGCTTGTCTGCCTTGGTGTAATATATGGTTTTGGGGTGGCAGAAAGTGTTTTGTTTGGGAACTGGGATTACCGGAGGCAGCTACTAATTCATTTCACAACTGATCATTTGAACAAACTGATTGATGGGATACAGTAAGAGGGAACTAATGTTCCTGTCTG]
[+] EMBL AK069259 [GACAAGGCTGAATATTGGTCTTCAGCAAATTGAAGGTACAGCGACAGTATCTGAATCTGGAAGCAATACTCCTAGTATTGCTGAAGGCCTGTATGAACCTCATAGTCAAGCAGAGAGTTGGCAGGATGATTTGGAACAAGAGAGAAGAGATTGGGAACAATTTTCCCATGCTATTACTGGAGAGGAATCTGAAATAAATTGGCATGAAAATACGTACAATGGTTCATCTCATGAGGGTACCGAAGTTGAAGGTGGTCAAGATGCACATATTCCAGAATCACATGATGAGTTAGCTAGTGACAATCTTCCTCCTCAATCTCATGGAGAACAGCAGGACAATAGCCATCTTCCCGAGGAGAATGAAGAGCTGCATGACAGTGATCTTCAACAATCTCGTGGAGAGTGGAATGAGGGCAGTAATCCATTTATTCCTACAGAAGTACACAACGAGTGGCACAGCGATGATCATTTCCAAGGAGTAAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGACAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGTCCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAGAAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGAAAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGTGCTCCTCTCTCTTGGGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAGAGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACCTCCGCCTATACCTCCTCGCCAGCCACTTTGGCATTCGGAGTTGCATCGTAATAACTGGATCAGACAAAACATACATCGCTCTGATATTGAATGGGAGGCTATTAATGACTTAAGGGCTGATATGGCTAGGCTTCAGCAGGGCATGAGTCATATGCAAAGAATGTTGGAAGCTTGTATGGACATGCAGCTCGAGTTACAGCGATCTGTAAGGCAGGAAGTTTCTGCAGCCTTGAATCGCTTCATCGGGGAGCAAGGTGAAAGTAAAGAAACTATAGACGATGGATCAAAATGGATCCATGTGAGAAAAGGGACGTGCTGTATATGCTGTGATACTCCGATTGACTCTCTTTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGCGCGAATGAGTTGGTTCGAAGCGGAGGGAAATGCCCGCTGTGCCGTGCACCCATAATTGAGGTGATCCGAGCATACTTCATCATGTAGATACAGAGAGAAAGGAAGATAAAGAAGAAGAAATGTTTTTTTCTTTTCTTTTTCCTACTTAGAGCTTGTAGGTGTTAGTGGATGTATGATTATATTCAATTTTAGCTATGCCCTATGCCTGTGTTGTCTTGTGTGTCTCTTGTCTCTGATGAGTTCCATTGTTTTGTTAGATTGGGGCCCTGCTTGTCTGCCTTGGTGTAATATATGGTTTTGGGGTGGCAGAAAGTGTTTTGTTTGGGAACTGGGATTACCGGAGGCAGCTACTAATTCATTTCACAACTGATCATTTGAACAAACTGATTGATGGGATACAGTAAGAGGGAACTAATGTT ]
[+] EMBL CF327568 [ AATCTCGTGGAGAGTGGAATGAGGGCAGTAATCCATTTATTCCTACAGAAGTACACAATGAGTGGCACAGCGGTGATCATTTCCAAGGAGTAAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGACAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGTCCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAGAAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGAAAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGCGCTCCTCTCTCTTGGGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAGAGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACCTCCGCCTATACCTCCTCCCCAGCCACTTTGGCATTCGGAGTTGCATCGTAATAACTGGATCAGACAAAACATACATCGCTCTGATATTGAATGGGAGGCTATTAATGACTTAAGGGCTGATATGGCTAGGCTTCAGCAGGGCATGAGTCATATGCAAAGAATGTTGGAAGCTTGTATGGACATGCAGCTCGAGTTAC ]
[-] EMBL CF327569 [ ATGAGTCATATGCAAAGAATGTTGGAAGCTTGTATGGACATGCAGCTCGAGTTACAGCGATCTGTAAGGCAGGAAGTTTCTGCAGCCTTGGATCGCTTCATCGGGGAGCAAGGTGAAAGTAAAGAAACTATAGACGATGGATCAAAATGGATCCATGTGAGAAAAGGGACGTGCTGTATATGCTGTGATACTCCGATTGACTCTCTTTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGCGCGAATGAGTTGGTTCGAAGCGGAGGGAAATGCCCGCTGTGCCGTGCACCCATAATTGAGGTGATCCGAGCATACTTCATCATGTAGATACAGAGAGAAAGGAAGATAAAGAAGAAGAAATGTTTTTTTCTTTTCTTTTTCCTACTTAGAGCTTGTAGGTGTTAGTGGATGTATGATTATATTCAATTTTAGCTATGCCCTATGCCTGTGTTGTCTTGTGTGTCTCTTGTCTCTGATGAGTTCCATTGTTTTGTTAGATTGGGGCCCTGCTTGTCTGCCTTGGTGTAATATATGGTTTTGGGGTGGCAGAAAGTGTTTTGTTTGGGAACTGGGATTACCGGAGGCAGCTAGTAATTCATTTCACAACTGATCATTTGAACAAAaaaa ]
[-] EMBL CB637623 [ GTTTCTGCAGCCTTGAATCGCTTCATCGGGGAGCAAGGTGAAAGTAAAGAAACTATAGACGATGGATCAAAATGGATCCATGTGAGAAAAGGGACGTGCTGTATATGCTGTGATACTCCGATTGACTCTCTTTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGCGCGAATGAGTTGGTTCGAAGCGGAGGGAAATGCCCGCTGTGCCGTGCACCCATAATTGAGGTGATCCGAGCATACTTCATCATGTAGATACAGAGAGAAAGGAAGATAAAGAAGAAGAAATGTTTTTTTCTTTTCTTTTTCCTACTTAGAGCTTGTAGGTGTTAGTGGATGTATGATTATATTCAATTTTAGCTATGCCCTAGGCCTGTGTTGTCTTGTGTGTCTCTTGTAAAAAATGAGTTCCATTGTTTTGTTAGATTGGGGCCCTGCTTGTCAGCCTTGGTGTAATATATGGTTTTGGGGTGGCAGAAAGTGTTTTGTTTGGGAACTGGGATTACCGGAGGCAGCTACTAATTCATTTCACAACTGATCATTTGAACAAACTGATTGATGGGATACAGTAAGAGGGAACTAATGTTCCTGTCTG]
consensusID : consensus_9191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence
[AATCTCGTGGAGAGTGGAATGAGGGCAGTAATCCATTTATTCCTACAGAAGTACACAACGAGTGGCACAGCGATGATCATTTCCAAGGAGTAAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGACAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGTCCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAGGTTTTTTTATTTCTTTCATGAAGAAAGTCTCTGCAACATATTTCTTTAGTTCTCAGCGTAAATACTGAATTAGTGTTCATTCTGCAGAAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGAAAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGTGCTCCTCTCTCTTGGGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAGAGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACC]
[+] EMBL CF309888 [AATCTCGTGGAGAGTGGAATGAGGGCAGTAATCCATTTATTCCTACAGAAGTACACAACGAGTGGCACAGCGATGATCATTTCCAAGGAGTAAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGACAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGTCCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAGGTTTTTTTATTTCTTTCATGAAGAAAGTCTCTGCAACATATTTCTTTAGTTCTCAGCGTAAATACTGAATTAGTGTTCATTCTGCAGAAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGAAAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGTGCTCCTCTCTCTTGGGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAGAGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACC]
consensusID : consensus_9191#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 99 fasta sequence
[CAGAGGACGAGACAAGGGGAAGAGGGGGCAGCTACTAATTCATTTCACAACTGATCATTTGAACAAACTGATTGATGGGATACAGTAAAAAAAAAAAAA]
[+] EMBL CA764076 [CAGAGGACGAGACAAGGGGAAGAGGGGGCAGCTACTAATTCATTTCACAACTGATCATTTGAACAAACTGATTGATGGGATACAGTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9191#0 GACAAGGCTGAATATTGGTCTTCAGCAAATTGAAGGTACAGCGACAGTATCTGAATCTGG 60
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 AAGCAATACTCCTAGTATTGCTGAAGGCCTGTATGAACCTCATAGTCAAGCAGAGAGTTG 120
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 GCAGGATGATTTGGAACAAGAGAGAAGAGATTGGGAACAATTTTCCCATGCTATTACTGG 180
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 AGAGGAATCTGAAATAAATTGGCATGAAAATACGTACAATGGTTCATCTCATGAGGGTAC 240
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 CGAAGTTGAAGGTGGTCAAGATGCACATATTCCAGAATCACATGATGAGTTAGCTAGTGA 300
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 CAATCTTCCTCCTCAATCTCATGGAGAACAGCAGGACAATAGCCATCTTCCCGAGGAGAA 360
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 TGAAGAGCTGCATGACAGTGATCTTCAACAATCTCGTGGAGAGTGGAATGAGGGCAGTAA 420
consensus_9191#1 -----------------------------AATCTCGTGGAGAGTGGAATGAGGGCAGTAA 31
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 TCCATTTATTCCTACAGAAGTACACAACGAGTGGCACAGCGATGATCATTTCCAAGGAGT 480
consensus_9191#1 TCCATTTATTCCTACAGAAGTACACAACGAGTGGCACAGCGATGATCATTTCCAAGGAGT 91
consensus_9191#2 -----------------------------------------------------------C 1
consensus_9191#0 AAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGA 540
consensus_9191#1 AAATGAAGAGTGGCATGATGATGATGAGTCCAATGATACTGCAGATAATTGGCATGATGA 151
consensus_9191#2 AGAGGACGA--GACAAGGGGAAGAGGGGGCAGCTACTAATTC----ATTTCACA-ACTGA 54
* * ** ** * ** * ** ** * * * * ** * * * ** ** ***
consensus_9191#0 CAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGT 600
consensus_9191#1 CAACTCTGATCAACCAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGT 211
consensus_9191#2 TCATTTGAACAAACTGATTGAT-GGGATACAGTAAAAAAAAAAAAA-------------- 99
* * * *** ****** *** * * * * ** *
consensus_9191#0 CCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAG------ 654
consensus_9191#1 CCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAGGTTTTT 271
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 ------------------------------------------------------------
consensus_9191#1 TTATTTCTTTCATGAAGAAAGTCTCTGCAACATATTTCTTTAGTTCTCAGCGTAAATACT 331
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 ---------------------AAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGA 693
consensus_9191#1 GAATTAGTGTTCATTCTGCAGAAGGAGTGTTTCTAATCTTCTTCATAGTGCTTTTCGTGA 391
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 AAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGTGCTCCTCTCTCTTG 753
consensus_9191#1 AAATTTGGACCGACTTATCCGGTCATATGTTGAAAGGCAAGGTCGTGCTCCTCTCTCTTG 451
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 GGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAG 813
consensus_9191#1 GGATTTGGAAGGAGCACCTCCTGCGCCTGACTCACCCGAGCAAAGCCAGGAGCAGCATAG 511
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 AGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACC 873
consensus_9191#1 AGATGAAGAGGAACAGGAGCTTCATGATAATGTTGTTAGGCCTCCCTTAGTGATTCCACC 571
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 TCCGCCTATACCTCCTCGCCAGCCACTTTGGCATTCGGAGTTGCATCGTAATAACTGGAT 933
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 CAGACAAAACATACATCGCTCTGATATTGAATGGGAGGCTATTAATGACTTAAGGGCTGA 993
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 TATGGCTAGGCTTCAGCAGGGCATGAGTCATATGCAAAGAATGTTGGAAGCTTGTATGGA 1053
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 CATGCAGCTCGAGTTACAGCGATCTGTAAGGCAGGAAGTTTCTGCAGCCTTGAATCGCTT 1113
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 CATCGGGGAGCAAGGTGAAAGTAAAGAAACTATAGACGATGGATCAAAATGGATCCATGT 1173
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 GAGAAAAGGGACGTGCTGTATATGCTGTGATACTCCGATTGACTCTCTTTTGTACAGATG 1233
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 TGGGCACATGTGCACATGTTCAAAATGCGCGAATGAGTTGGTTCGAAGCGGAGGGAAATG 1293
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 CCCGCTGTGCCGTGCACCCATAATTGAGGTGATCCGAGCATACTTCATCATGTAGATACA 1353
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 GAGAGAAAGGAAGATAAAGAAGAAGAAATGTTTTTTTCTTTTCTTTTTCCTACTTAGAGC 1413
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 TTGTAGGTGTTAGTGGATGTATGATTATATTCAATTTTAGCTATGCCCTATGCCTGTGTT 1473
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 GTCTTGTGTGTCTCTTGTCTCTGATGAGTTCCATTGTTTTGTTAGATTGGGGCCCTGCTT 1533
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 GTCTGCCTTGGTGTAATATATGGTTTTGGGGTGGCAGAAAGTGTTTTGTTTGGGAACTGG 1593
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 GATTACCGGAGGCAGCTACTAATTCATTTCACAACTGATCATTTGAACAAACTGATTGAT 1653
consensus_9191#1 ------------------------------------------------------------
consensus_9191#2 ------------------------------------------------------------
consensus_9191#0 GGGATACAGTAAGAGGGAACTAATGTTCCTGTCTG 1688
consensus_9191#1 -----------------------------------
consensus_9191#2 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||