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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1168 fasta sequence
[TGGCTATCGCGGAAGGGAGCGGCGGCGAACCCAGCTCGGTGAGTCGTCGTCGGCGGCGGCGGCGACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCATGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTGTCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTTCCCATGGGCTTCAAAAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAGAAGCATTTTCATGAAGATTTGGATGAAGTGAGGAGGAACTGGGGAATTATACCATGCCCTGATCCCAAAAGGAGCAGTGTTTAGACTTTTAGATCGGTACATTTTGCATGAAAGATGTCTGAACTTGGTTTTCACTTTGTCTACGTTAGTATTAGCTCTTCCCTTTCAAGAATAATAGCAAGAGTTATGCTATTGATACCTAAAAAAACTAGTAATTCTCTTTAACTTAGCATAGCAACTAAGCTTGCAATGTTGATGTTCCCTTTAACAATAGTGTAGATGAGTTAATTACATTTTTATGTGTAATACTAGCTGAATGCCGGTACTTCGCTATGGACAGAAGAAAACATATCATAATATTGTCTGAAATAAATAAAATTAT]
[+] EMBL AK103795 [TGGCTATCGCGGAAGGGAGCGGCGGCGAACCCAGCTCGGTGAGTCGTCGTCGGCGGCGGCGGCGACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCATGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTGTCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTTCCCATGGGCTTCAAAAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAGAAGCATTTTCATGAAGATTTGGATGAAGTGAGGAGGAACTGGGGAATTATACCATGCCCTGATCCCAAAAGGAGCAGTGTTTAGACTTTTAGATCGGTACATTTTGCATGAAAGATGTCTGAACTTGGTTTTCACTTTGTCTACGTTAGTATTAGCTCTTCCCTTTCAAGAATAATAGCAAGAGTTATGCTATTGATACCTAAAAAAACTAGTAATTCTCTTTAACTTAGCATAGCAACTAAGCTTGCAATGTTGATGTTCCCTTTAACAATAGTGTAGATGAGTTAATTACATTTTTATGTGTAATACTAGCTGAATGCCGGTACTTCGCTATGGACAGAAGAAAACATATCATAATATTGTCTGAAATAAATAAAATTAT]
[+] EMBL AF074755 [ GGAGCGGCGGCGAA CCAGCTCGTTGAGTCGTCGTCGGCGGCGGCGGCGACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCNTGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATANCTGTTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATNAGGAACAGTGCT ]
[+] EMBL AK101965 [ GCGGCGAACCCAGCTCGGTGAGTCGTCGTCGGCGGCGGCGGCGACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCATGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTGTCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTTCCCATGGGCTTCAAAAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAGAAGCATTTTCATGAAGATTTGGATGAAGTGAGGAGGAACTGGGGAATTATACCATGCCCTGATCCCAAAAGGAGCAGTGTTTAGACTTTTAGATCGGTACATTTTGCATGAAAGATGTCTGAACTTGGTTTTCACTTTGTCTACGTTAGTATTAGCTCTTCCCTTTCAAGAATAATAGCAAGAGTTATGCTATTGATACCTAAAAAAACTAGTAATTCTCTTTAACTTAGCATAGCAACTAAGCTTGCAATGTTGATGTTCCCTTTAACAATAGTGTAGATGAGTTAATTACATTTTTATGTGTAATACTAGCTGAATGCCGGTACTTCGCTATGGACAGAAGAAAACATATCATAATATTGTCTGAAATAAATAAAA ]
[+] EMBL CF307358 [ GACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCATGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATAT ]
[+] EMBL CA998935 [ GCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTGTCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTT CCATGGGCTTCAAAAGCAGGTCTTAAGTGCACAGATCTTATGTC ]
consensusID : consensus_9192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[GCCCAGCTCTACGCCGGCGGCGGCGACGGCTGAGGACCACGTGACGTGCGGATCAGCTCGGAGGCAACGGCGATCCATCTCTTCTCTCCCCCCTCACGATTCAGAGGCTCAACCGAGCGGCGAACGGGAGCGCTCGACGGCGAGGTGCGCGCACGCGAATCCAGTTCCCCTAGAGAGTCATGCAGGGGGCGCGCGTTAATCTGAAGGGGTGGCAACAGGCAGCGGGTGCATTTGGTTCTGCATTTGGGGCATTGCTTGACCCTAGAAGAGCTGATCTGATAGCTACTCTTGGGGAGACTACTGGGAAGCCAGCATTTCACCGTGTGCCTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACGCAGGTTTCTCATGCCTGGGACATGCCTCATAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCAGATGACCGCCCACCTGTCCGTTTCATTGACACAGATGAGCTTGCGTATGTTGCGACCC]
[+] EMBL CF327725 [GCCCAGCTCTACGCCGGCGGCGGCGACGGCTGAGGACCACGTGACGTGCGGATCAGCTCGGAGGCAACGGCGATCCATCTCTTCTCTCCCCCCTCACGATTCAGAGGCTCAACCGAGCGGCGAACGGGAGCGCTCGACGGCGAGGTGCGCGCACGCGAATCCAGTTCCCCTAGAGAGTCATGCAGGGGGCGCGCGTTAATCTGAAGGGGTGGCAACAGGCAGCGGGTGCATTTGGTTCTGCATTTGGGGCATTGCTTGACCCTAGAAGAGCTGATCTGATAGCTACTCTTGGGGAGACTACTGGGAAGCCAGCATTTCACCGTGTGCCTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACGCAGGTTTCTCATGCCTGGGACATGCCTCATAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCAGATGACCGCCCACCTGTCCGTTTCATTGACACAGATGAGCTTGCGTATGTTGCGACCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9192#0 TGGCTATCGCGGAAGGGAGCGGCGGCGAACCCAGCTCGGTGAGTCGTCGTCGGCGGCGGC 60
consensus_9192#1 ---------------------------------------------GCCCAGCTCTACGCC 15
* * * ** *
consensus_9192#0 GGCGACGGCGACGGCT-AGGACCACGTGACG--CGGATCAGCTCGGAGGCAGCGACGACC 117
consensus_9192#1 GGCGGCGGCGACGGCTGAGGACCACGTGACGTGCGGATCAGCTCGGAGGCAACGGCGATC 75
**** *********** ************** ****************** ** *** *
consensus_9192#0 CATCTCTGATCTCCC---TCACG-TTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTC 173
consensus_9192#1 CATCTCTTCTCTCCCCCCTCACGATTCAGAGGCTCAACCGAGCGGCGAACGGGAGCGCTC 135
******* ****** ***** ********* * *** **** *** **********
consensus_9192#0 GACGGCGAG-------------------------------AGTCATGCAGGGGGCGCGTG 202
consensus_9192#1 GACGGCGAGGTGCGCGCACGCGAATCCAGTTCCCCTAGAGAGTCATGCAGGGGGCGCGCG 195
********* ****************** *
consensus_9192#0 TTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGC 262
consensus_9192#1 TTAATCTGAAGGGGTGGCAACAGGCAGCGGGTGCATTTGGTTCTGCATTTGGGGCATTGC 255
************************* ** * ****** ***************** ****
consensus_9192#0 TTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCAT 322
consensus_9192#1 TTGACCCTAGAAGAGCTGATCTGATAGCTACTCTTGGGGAGACTACTGGGAAGCCAGCAT 315
***************************** ******************************
consensus_9192#0 TTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGC 382
consensus_9192#1 TTCACCGTGTGCCTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGC 375
**** ******* ***********************************************
consensus_9192#0 GTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTG 442
consensus_9192#1 GTCCTCGAGTTATATCCACGCAGGTTTCTCATGCCTGGGACATGCCTCATAACACATTTG 435
******************* ** ************************** **********
consensus_9192#0 GTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTG 502
consensus_9192#1 GTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCAGATGACCGCCCACCTG 495
******************************************* ****************
consensus_9192#0 TCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATG 562
consensus_9192#1 TCCGTTTCATTGACACAGATGAGCTTGCGTATGTTGCGACCC------------------ 537
********** ** ****************************
consensus_9192#0 ACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGG 622
consensus_9192#1 ------------------------------------------------------------
consensus_9192#0 TCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTG 682
consensus_9192#1 ------------------------------------------------------------
consensus_9192#0 CGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTTCCCATGGGCTTCAA 742
consensus_9192#1 ------------------------------------------------------------
consensus_9192#0 AAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAGAAGCATTTTCATGAAG 802
consensus_9192#1 ------------------------------------------------------------
consensus_9192#0 ATTTGGATGAAGTGAGGAGGAACTGGGGAATTATACCATGCCCTGATCCCAAAAGGAGCA 862
consensus_9192#1 ------------------------------------------------------------
consensus_9192#0 GTGTTTAGACTTTTAGATCGGTACATTTTGCATGAAAGATGTCTGAACTTGGTTTTCACT 922
consensus_9192#1 ------------------------------------------------------------
consensus_9192#0 TTGTCTACGTTAGTATTAGCTCTTCCCTTTCAAGAATAATAGCAAGAGTTATGCTATTGA 982
consensus_9192#1 ------------------------------------------------------------
consensus_9192#0 TACCTAAAAAAACTAGTAATTCTCTTTAACTTAGCATAGCAACTAAGCTTGCAATGTTGA 1042
consensus_9192#1 ------------------------------------------------------------
consensus_9192#0 TGTTCCCTTTAACAATAGTGTAGATGAGTTAATTACATTTTTATGTGTAATACTAGCTGA 1102
consensus_9192#1 ------------------------------------------------------------
consensus_9192#0 ATGCCGGTACTTCGCTATGGACAGAAGAAAACATATCATAATATTGTCTGAAATAAATAA 1162
consensus_9192#1 ------------------------------------------------------------
consensus_9192#0 AATTAT 1168
consensus_9192#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||