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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 929 fasta sequence
[GCCTCGCTCGAACGCGCGGCGCCGCCATCGCACAGAAGCAGAAGCGCGTCACACGCGAGCGCGGCGGCGCACAGACGCCGTCGAGGCATCGCCCTCGGCCGGTTGCAGACGACGTTCTCTCGCTCGGTCGGCCATCTCCCCTTGCTCACCGCGCGCGGCGCGCCCCCACCGCCCTTGGCAAGCTGCCTCGCCGAGTAGTTCTGATTCGATTCAATCGATTGCCAGAGGAGCCAGGAGGTGTTGAAATTGGAAACCCCTGAAGTTTGATCAGCTGAACCAGTTATCAACTCCAGCAGAACAGTAGAATCTCTAGCTAGCCAAAGAAGCCAAGGATAGCAATGGCACTCCGGCGAGCACTGGGATGGTCAGAGGGGGAGGTAATGCGTCCAGAGTCTAAGCCTTGCTCCCGGTTGATGCGACAGACTGCTGGCGTCTTCTCTGTTGGCGGTGCCCTTTCTTTCTGGGTGCTCTGCCGCCTTCACTACGGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAATGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAACACGCTAGGTTTGTTGTTCTGTGGGTTTTATTTACTTGATAAGA]
[+] EMBL AK101880 [GCCTCGCTCGAACGCGCGGCGCCGCCATCGCACAGAAGCAGAAGCGCGTCACACGCGAGCGCGGCGGCGCACAGACGCCGTCGAGGCATCGCCCTCGGCCGGTTGCAGACGACGTTCTCTCGCTCGGTCGGCCATCTCCCCTTGCTCACCGCGCGCGGCGCGCCCCCACCGCCCTTGGCAAGCTGCCTCGCCGAGTAGTTCTGATTCGATTCAATCGATTGCCAGAGGAGCCAGGAGGTGTTGAAATTGGAAACCCCTGAAGTTTGATCAGCTGAACCAGTTATCAACTCCAGCAGAACAGTAGAATCTCTAGCTAGCCAAAGAAGCCAAGGATAGCAATGGCACTCCGGCGAGCACTGGGATGGTCAGAGGGGGAGGTAATGCGTCCAGAGTCTAAGCCTTGCTCCCGGTTGATGCGACAGACTGCTGGCGTCTTCTCTGTTGGCGGTGCCCTTTCTTTCTGGGTGCTCTGCCGCCTTCACTACGGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAATGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAAT ]
[+] EMBL AK061130 [ ACGCGCGGCGCCGCCATCGCACAGAAGCAGAAGCGCGTCACACGCGAGCGCGGCGGCGCACAGACGCCGTCGAGGCATCGCCCTCGGCCGGTTGCAGACGACGTTCTCTCGCTCGGTCGGCCATCTCCCCTTGCTCACCGCGCGCGGCGCGCCCCCACCGCCCTTGGCAAGCTGCCTCGCCGAGTAGTTCTGATTCGATTCAATCGATTGCCAGAGGAGCCAGGAGGTGTTGAAATTGGAAACCCCTGAAGTTTGATCAGCTGAACCAGTTATCAACTCCAGCAGAACAGTAGAATCTCTAGCTAGCCAAAGAAGCCAAGGATAGCAATGGCACTCCGGCGAGCACTGGGATGGTCAGAGGGGGAGGTAATGCGTCCAGAGTCTAAGCCTTGCTCCCGGTTGATGCGACAGACTGCTGGCGTCTTCTCTGTTGGCGGTGCCCTTTCTTTCTGGGTGCTCTGCCGCCTTCACTACGGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAATGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAACACGCTAGGTTTGTTGTTCTGTGGGTTTTATTTACTTGATAAGA]
consensusID : consensus_9202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence
[CTCTTCTCTCCCGTCCCAGATCTCGACTCAACGTTCGTTCTCTACCTCAATACCTCCAAGCCGTGCTACCGACTGCGCTCGTGCCTTCCTCCACACCATTATAACTCTAGCTAACCCAAAGATCTCAGGTACACCCAACCCCCTCCGCCCGCGCCCTCCACTGGCGACACGGCGCAGGTAACCGTCCACAGCTTAACCCCTACTCCCGCGCCTACACGAGGTCGCTCAGGGGTCTGTCCTGGCGACGTGTCCTTTCTTTCCGGGGGTGCTCGCGCCTTCTGCCCGGTCCAAGCAAACCAGTTCCCAGCAGTTTCAGGCGGGCATCCTCCGGAGCAATCTCCGTCAGCTCAGCATCGGCATCGCTCGTCTGACTTTTCAACCCAAAGTGTCAACCCCACAATATAGCACCTTATGCCAAACTTGGGCCCAAGGCTGCATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGGTGGGGAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAACATGTTTATGCAAGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAACGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAAAAAAAAAAAAAAAA]
[-] EMBL CA760116 [CTCTTCTCTCCCGTCCCAGATCTCGACTCAACGTTCGTTCTCTACCTCAATACCTCCAAGCCGTGCTACCGACTGCGCTCGTGCCTTCCTCCACACCATTATAACTCTAGCTAACCCAAAGATCTCAGGTACACCCAACCCCCTCCGCCCGCGCCCTCCACTGGCGACACGGCGCAGGTAACCGTCCACAGCTTAACCCCTACTCCCGCGCCTACACGAGGTCGCTCAGGGGTCTGTCCTGGCGACGTGTCCTTTCTTTCCGGGGGTGCTCGCGCCTTCTGCCCGGTCCAAGCAAACCAGTTCCCAGCAGTTTCAGGCGGGCATCCTCCGGAGCAATCTCCGTCAGCTCAGCATCGGCATCGCTCGTCTGACTTTTCAACCCAAAGTGTCAACCCCACAATATAGCACCTTATGCCAAACTTGGGCCCAAGGCTGCATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGGTGGGGAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAACATGTTTATGCAAGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAACGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAAAAAAAAAAAAAAAA]
consensusID : consensus_9202#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 695 fasta sequence
[GGCACTCCGGCGAGCACTGGGATGGTCAGAGGGGGAGGTAATGCGTCCAGAGTCTAAGCCTTGCTCCCGGTTGATGCGACAGACTGCTGGCGTCTTCTCTGTTGGCGGTGCCCTTTCTTTCTGGGTGCTCTGCCGCCTTCACTACGGTCATTGTTCTTATCCATTTAATTCTCCATGATTCATTCTGTTCTATATTCTATCCATCTTGCCAATGGTAGTTAGTACTGACCTTGTGTTTCTTTTGTAGGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAAAAATTGNTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAACACGCTAGGTTTGGTGGTCTGNGGGNTTTATTTACTTGATAAGATTCTT]
[+] EMBL CA765919 [GGCACTCCGGCGAGCACTGGGATGGTCAGAGGGGGAGGTAATGCGTCCAGAGTCTAAGCCTTGCTCCCGGTTGATGCGACAGACTGCTGGCGTCTTCTCTGTTGGCGGTGCCCTTTCTTTCTGGGTGCTCTGCCGCCTTCACTACGGTCATTGTTCTTATCCATTTAATTCTCCATGATTCATTCTGTTCTATATTCTATCCATCTTGCCAATGGTAGTTAGTACTGACCTTGTGTTTCTTTTGTAGGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAATGATTGNTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAACACGCTAGGTTTGGTGGTCTGNGGGNTTTATTTACTTGATAAGATTCTT]
[+] EMBL CF328718 [ GCATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAAAAA ]
[-] EMBL CF328719 [ CATCATGCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGTGTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATAGAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATCGTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCATGATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTGGACAAAAAa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9202#0 GCCTCGCTCGAACGCGCGGCGCCGCCATCGCACAGAAGCAGAAGCGCGTCACACGCGAGC 60
consensus_9202#2 ------------------------------------------------------------
consensus_9202#1 ------------------------------------------------------------
consensus_9202#0 GCGGCGGCGCACAGACGCCGTCGAGGCATCGCCCTCGGCCGGTTGCAGACGACGTTCTCT 120
consensus_9202#2 ------------------------------------------------------------
consensus_9202#1 ------------------------------------------------------------
consensus_9202#0 CGCTCGGTCGGCCATCTCCCCTTGCTCACCGCGCGCGGCGCGCCCCCACCGCCCTTGGCA 180
consensus_9202#2 ------------------------------------------------------------
consensus_9202#1 ------------------------------------------------------------
consensus_9202#0 AGCTGCCTCGCCGAGTAGTTCTGATTCGATTCAATCGATTGCCAGAGGAGCCAGGAGGTG 240
consensus_9202#2 -------------------------GGCACTCCGGCGAGCACTGGGATGGTCAGAGGGGG 35
consensus_9202#1 -----------------------------CTCTTCTCTCCCGTCCCAGATCTCGACTCAA 31
** *
consensus_9202#0 TTGAAATTGGAAACCCCTGAAG-TTTGATCAGCTGAACCAGTTA-----TCAACT-CCAG 293
consensus_9202#2 AGGTAAT-----GCGTCCAGAG-TCTAAGCCTTGCTCCCGGTTG-----ATG-----CGA 79
consensus_9202#1 CGTTCGTTCTCTACCTCAATACCTCCAAGCCGTGCTACCGACTGCGCTCGTGCCTTCCTC 91
* * * * * * * ** * *
consensus_9202#0 CAGAACAGTAGAATCTCTAGCTAGCCAAAGAAGCCAAGGATAGCAATGGCACTCCGGC-- 351
consensus_9202#2 CAGACTGCTGGCGTCTTC--TCTGTTGGCGGTGCCCTTTCTTTCTG-GGTGCTCTGCC-- 134
consensus_9202#1 CACACCATTATAACTCTAGCTAACCCAAAGATCTCAGGTACACCCAACCCCCTCCGCCCG 151
** * * * * * *** * *
consensus_9202#0 -GAGCACTGGGATGGTCAGAGGGGGAGGTAATGCGTCCAGAGTCTAAGCCTTGCTCCCGG 410
consensus_9202#2 -GC-CTTCACTACGGTCATTGTT--------CTTATCCA---TTTAATTCTC---CATGA 178
consensus_9202#1 CGCCCTCCACTGGCGACACGGCGCAGG--TAACCGTCCACAGCTTAACCCCTACTCCCGC 209
* * * ** * **** *** * * *
consensus_9202#0 TTGATGCGACAGACTGCTGGCGTCTTCTCTGTTGGCGG--TGCCCTTTCTTTCTGGGTGC 468
consensus_9202#2 TTCATTCTGTTCTATATT----CTATCCATCTTGCCAA--TGGTAGTTAGTACTGA-CCT 231
consensus_9202#1 GCCTACACGAGGTCGCTCA--GGGGTCTGTCCTGGCGACGTGTCCTTTCTTTCCGGGGGT 267
** * ** * ** ** * * *
consensus_9202#0 TCTGCCGCCTTCACTACGGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCAT 528
consensus_9202#2 TGTGTTTCTTTTGTA--GGTCCAAGAATAACAGTTCCAAGGAGTCTCAGGTGGGCATCAT 289
consensus_9202#1 GCTCGCGCCTTCTGCCCGGTCCAAGCAAACCAGTTCCCAGCAGTTTCAGGCGGGCATCCT 327
* * ** ******** * * ******* ** *** ***** ******* *
consensus_9202#0 GCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGT 588
consensus_9202#2 GCGGAGCAATCTCTGTGAGCTCAGCATCGGCATTGCTCGTGCGACTCTTCAGCCCAGAGT 349
consensus_9202#1 CCGGAGCAATCTCCGTCAGCTCAGCATCGGCATCGCTCGTCTGACTTTTCAACCCAAAGT 387
************ ** **************** ****** **** **** **** ***
consensus_9202#0 GTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATA 648
consensus_9202#2 GTGAACCACAGAATATAGCAGCTTATGACAAACTTGGACACAAGACTGGATAGTATTATA 409
consensus_9202#1 GTCAACCCCACAATATAGCACCTTATGCCAAACTTGGGCCCAAGGCTGCATAGTATTATA 447
** **** ** ********* ****** ********* * **** *** ***********
consensus_9202#0 GAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATC 708
consensus_9202#2 GAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGCTAGGTAGCAAACCTCTGTATC 469
consensus_9202#1 GAAATATTAGGTCTTGATCATCATCTAAAGAATTAGAGGTGGGGAGCAAACCTCTGTATC 507
************************************** * ** ****************
consensus_9202#0 GTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCAT 768
consensus_9202#2 GTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAAGATGTTTATGCAT 529
consensus_9202#1 GTTTGCTGATTCAGTCTAGGAGATATATTGTATGTCTTTTTCTGGAACATGTTTATGCAA 567
*********************************************** ***********
consensus_9202#0 GATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTG 828
consensus_9202#2 GATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTG 589
consensus_9202#1 GATGTAACTTGGCCTGAAGACCTTCCCTCCATAGGAGTATCCACTTCACTGGCTGCCGTG 627
************************************************************
consensus_9202#0 GACAATGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAACAC 888
consensus_9202#2 GACAAAAATTGNTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAACAC 649
consensus_9202#1 GACAACGATTGTTATTATTTTACCTGAAACCTGATGGGTTTAATAAGTTTAAGGAAAAAA 687
***** **** ********************************************* *
consensus_9202#0 GCTAGGTTTGTTGTTCTGTGGGTTTTATTTACTTGATAAGA----- 929
consensus_9202#2 GCTAGGTTTGGTGGTCTGNGGGNTTTATTTACTTGATAAGATTCTT 695
consensus_9202#1 AAAAAAAAAAA----------------------------------- 698
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||