These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [TACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAACCCATGGGATCCCTTTTTTATTTAGGGGGGCAAAGGAAACAGCACCCCCCCCATCTTGGGTTTTTTTTTAACAAAAAGAAAGTTACCCCTTTTCCCCACCGGGTGCCAAAAAAAATCAACCCATTTTGGTTCCCCCATGGGCCAGGGGGCTCCAAACAAACTGGTAAACTCCTTCAATCCCCCCTCAAAAAGGAGTAGGGCAAAGGAAATCTCATTTTTTCCCCCCCCGAGCTTGGTTTTTTGAGTCCCCAACAAGGCCCCCAAGAAACCCCAACAGGGGTACCAAAACGGGAAATTTTTGGGGGCTTTTGGAACCCGGGATTTTTTTCTTTGGGCGGGTTAACA] [+] EMBL CF309091 [TACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAACCCATGGGATCCCTTTTTTATTTAGGGGGGCAAAGGAAACAGCACCCCCCCCATCTTGGGTTTTTTTTTAACAAAAAGAAAGTTACCCCTTTTCCCCACCGGGTGCCAAAAAAAATCAACCCATTTTGGTTCCCCCATGGGCCAGGGGGCTCCAAACAAACTGGTAAACTCCTTCAATCCCCCCTCAAAAAGGAGTAGGGCAAAGGAAATCTCATTTTTTCCCCCCCCGAGCTTGGTTTTTTGAGTCCCCAACAAGGCCCCCAAGAAACCCCAACAGGGGTACCAAAACGGGAAATTTTTGGGGGCTTTTGGAACCCGGGATTTTTTTCTTTGGGCGGGTTAACA] consensusID : consensus_9205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAACCCAGGGGACCCCCTTGTTTTTTATGGGGGGAAAGGAAAAACCCCCCCCCCCCTCTTGGGTTTTTTTTTTCCAAAAAGAAAATTCCCCCTTTTCCCCCCGGGGGGGAAAAAAAAAAAAACCCATTTTGGGTCCCCCGGGGGCCCGGGGGCCCCAAACAAACTGGTAAACCCTTTCAAACCCCCCCCAAAAAGGGGTTGGGCAAAAGAAATTTTTTTTTTTCCCCCCCCCGGCTTTTTTTTTTTGGTCCCCAAAAAGGCCCCTAAGAAACCCCAACCGGGGTCCCAAAACCGGAAAATTTTGGGGGGTTTTGGAACCCAGGATTTTTTTCTTTGGGCGGGTTAAA] [+] EMBL CF329450 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAACCCAGGGGACCCCCTTGTTTTTTATGGGGGGAAAGGAAAAACCCCCCCCCCCCTCTTGGGTTTTTTTTTTCCAAAAAGAAAATTCCCCCTTTTCCCCCCGGGGGGGAAAAAAAAAAAAACCCATTTTGGGTCCCCCGGGGGCCCGGGGGCCCCAAACAAACTGGTAAACCCTTTCAAACCCCCCCCAAAAAGGGGTTGGGCAAAAGAAATTTTTTTTTTTCCCCCCCCCGGCTTTTTTTTTTTGGTCCCCAAAAAGGCCCCTAAGAAACCCCAACCGGGGTCCCAAAACCGGAAAATTTTGGGGGGTTTTGGAACCCAGGATTTTTTTCTTTGGGCGGGTTAAA] consensusID : consensus_9205#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGCCCAGGGAACCCCTTTTTTTTTTAAGGGGGCAAAGGAAACACCAGCCCCCCCGTCTTGGGTTTTTTTTTTCCCAAATGAAAATTTCCTTTTTGCCCCAGCGGGGGGGGAAAAAAAACAACCCATTTTGGTTCCCCCAGGGGCCCGGGGGCCCCAAACAAACTGGTAAACCCCTTCAATCCCCCCTCAAAAAGGAGTAGGGCCAAGGAAATTTTATTTTTTCCCCCCCCCAGCTTGGTTTTTTGAGTCCCCAACCAGGCCCCCAGGAAACCCCAACCGGGGTTCCAAAACGGGAAATTTTTGGGGGCTTTTGGACCCCAGGATTTTTTTC] [+] EMBL CF276982 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGCCCAGGGAACCCCTTTTTTTTTTAAGGGGGCAAAGGAAACACCAGCCCCCCCGTCTTGGGTTTTTTTTTTCCCAAATGAAAATTTCCTTTTTGCCCCAGCGGGGGGGGAAAAAAAACAACCCATTTTGGTTCCCCCAGGGGCCCGGGGGCCCCAAACAAACTGGTAAACCCCTTCAATCCCCCCTCAAAAAGGAGTAGGGCCAAGGAAATTTTATTTTTTCCCCCCCCCAGCTTGGTTTTTTGAGTCCCCAACCAGGCCCCCAGGAAACCCCAACCGGGGTTCCAAAACGGGAAATTTTTGGGGGCTTTTGGACCCCAGGATTTTTTTC] consensusID : consensus_9205#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAACCCAGGGGACCCCTTTTTTTTTTAAGGGGGCAAAGGAAACAACACCCCCCCCTTTTTGGGTTTTTTTTTTCCAAAAAGAAAGTTCCCCCTTTGCCCCACCGGGTGCAAAAAAAAAACAACCCATTTTGGTTCCCCCAGGGGCCCGGGGGCCCCAAACAAACTGTTAAACCCCTTCAATCCCCCCCCAAAAAGGGATTGGGCAAAAGAAAACTTTTTTTTTCCCCCCCCGAACTTGTTTTTTTGAGTCCCCAACAAGGCCCCCAGGAAACCCCAACCGGGGTCCCAAAACCGGAA] [+] EMBL CF276302 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAACCCAGGGGACCCCTTTTTTTTTTAAGGGGGCAAAGGAAACAACACCCCCCCCTTTTTGGGTTTTTTTTTTCCAAAAAGAAAGTTCCCCCTTTGCCCCACCGGGTGCAAAAAAAAAACAACCCATTTTGGTTCCCCCAGGGGCCCGGGGGCCCCAAACAAACTGTTAAACCCCTTCAATCCCCCCCCAAAAAGGGATTGGGCAAAAGAAAACTTTTTTTTTCCCCCCCCGAACTTGTTTTTTTGAGTCCCCAACAAGGCCCCCAGGAAACCCCAACCGGGGTCCCAAAACCGGAA] consensusID : consensus_9205#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAAACCCCTGGGAACCCCTTTTTTTTTTAGGGGGCAAAGGGAAAAACCACCCCCCCCTCTTGGGTTTTTTTTTTACCAAAAGAAAATTTCCCCCTTTCCCCCACGGGTGGGAAAAAAAAATAACCCATTTTGGGTCCCCCAGGGGCCCGGGGGCCCCAAACCAACTGGTAAACCCCTTCAATCCCCCCCCAAAAAGGGGTTGGGCCAAAGGAAATTTTTTTTTTTCCCCCCCCAGCTTTTTTTTTTTAGTCCCCAAAAAGGCCCCCAAGAAACCCCAACCGGGGTTCCAAAACCGGAA] [+] EMBL CF311301 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAAACCCCTGGGAACCCCTTTTTTTTTTAGGGGGCAAAGGGAAAAACCACCCCCCCCTCTTGGGTTTTTTTTTTACCAAAAGAAAATTTCCCCCTTTCCCCCACGGGTGGGAAAAAAAAATAACCCATTTTGGGTCCCCCAGGGGCCCGGGGGCCCCAAACCAACTGGTAAACCCCTTCAATCCCCCCCCAAAAAGGGGTTGGGCCAAAGGAAATTTTTTTTTTTCCCCCCCCAGCTTTTTTTTTTTAGTCCCCAAAAAGGCCCCCAAGAAACCCCAACCGGGGTTCCAAAACCGGAA] consensusID : consensus_9205#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAACCCATGGAAACCCTTTTTTTTTTAAGGGGGCAAAGGAAAAAACAACCCCCCCATTTTGGGTTTTTTTTTTCCCAAATGAAAATTACCCCTTTTCCCCCGCGGGTGCAAAAAAAAAACAACCCATTTTGGTTCCCCCGGGGGCCCGGGGGCCCCAAACCAACTGTTAAACTCCTTCAAACCCCCCCCAAAAAGGAGTTGGGCAAAAGAAA] [+] EMBL CF312577 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAACCCATGGAAACCCTTTTTTTTTTAAGGGGGCAAAGGAAAAAACAACCCCCCCATTTTGGGTTTTTTTTTTCCCAAATGAAAATTACCCCTTTTCCCCCGCGGGTGCAAAAAAAAAACAACCCATTTTGGTTCCCCCGGGGGCCCGGGGGCCCCAAACCAACTGTTAAACTCCTTCAAACCCCCCCCAAAAAGGAGTTGGGCAAAAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9205#0 TACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_9205#2 --------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 34 consensus_9205#3 ---------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 39 consensus_9205#5 --------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 40 consensus_9205#1 -------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 47 consensus_9205#4 -------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTT 29 ***************************** consensus_9205#0 TTTTTTTTTTTTTTTTTTTTTTTTTGAAAAACCCATGGGATCCCTTTTTTATTTAGGGGG 120 consensus_9205#2 TTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGCCCAGGGAACCCCTTTTTTTTTTAAGGGG 94 consensus_9205#3 TTTTTTTTTTTTTTTTTTTTTTTTGGAAAAACCCAGGGGACCCCTTTTTTTTTTAAGGGG 99 consensus_9205#5 TTTTTTTTTTTTTTTTTTTTTTTTTGAAAAACCCATGGAAACCCTTTTTTTTTTAAGGGG 100 consensus_9205#1 TTTTTTTTTTTTTTTTTTTTTTTTTAAAAAACCCAGGGGACCCCCTTGTTTTTTATGGGG 107 consensus_9205#4 TTTTTTTTTTTTTTTTTTTTTTTGGGAAAAACCCCTGGGAACCCCTTTTTTTTTTAGGGG 89 *********************** **** *** ** * *** ** ** *** **** consensus_9205#0 GCAAAGGAAACAGCACCCCCCCCATCTTGGGTTTTTTTTTAACAAAAAGAAAGTTACCCC 180 consensus_9205#2 GCAAAGGAAACACCAGCCCCCCCGTCTTGGGTTTTTTTTTTCCCAAATGAAAATTTCCTT 154 consensus_9205#3 GCAAAGGAAACAACACCCCCCCCTTTTTGGGTTTTTTTTTTCCAAAAAGAAAGTTCCCCC 159 consensus_9205#5 GCAAAGGAAAAAACAACCCCCCCATTTTGGGTTTTTTTTTTCCCAAATGAAAATTACCCC 160 consensus_9205#1 GGAAAGGAAAAACCCCCCCCCCCCTCTTGGGTTTTTTTTTTCCAAAAAGAAAATTCCCCC 167 consensus_9205#4 GCAAAGGGAAAAACCACCCCCCCCTCTTGGGTTTTTTTTTTACCAAAAGAAAATTTCCCC 149 * ***** ** * * ******* * ************** * *** **** ** ** consensus_9205#0 TTTTCCCCACCGGGTGCCAAAAAAAATCAACCCATTTTGGTTCCCCCATGGGCCAGGGGG 240 consensus_9205#2 TTTGCCCCAGCGGGGGGGGAAAAAAAACAACCCATTTTGGTTCCCCCAGGGGCCCGGGGG 214 consensus_9205#3 TTTGCCCCACCGGGTGCAAAAAAAAAACAACCCATTTTGGTTCCCCCAGGGGCCCGGGGG 219 consensus_9205#5 TTTTCCCCCGCGGGTGCAAAAAAAAAACAACCCATTTTGGTTCCCCCGGGGGCCCGGGGG 220 consensus_9205#1 TTTTCCCCCCGGGGGGGAAAAAAAAAAAAACCCATTTTGGGTCCCCCGGGGGCCCGGGGG 227 consensus_9205#4 CTTTCCCCCACGGGTGGGAAAAAAAAATAACCCATTTTGGGTCCCCCAGGGGCCCGGGGG 209 ** **** *** * ******* ************ ****** ***** ***** consensus_9205#0 CTCCAAACAAACTGGTAAACTCCTTCAATCCCCCCTCAAAAAGGAGTAGGGCAAAGGAAA 300 consensus_9205#2 CCCCAAACAAACTGGTAAACCCCTTCAATCCCCCCTCAAAAAGGAGTAGGGCCAAGGAAA 274 consensus_9205#3 CCCCAAACAAACTGTTAAACCCCTTCAATCCCCCCCCAAAAAGGGATTGGGCAAAAGAAA 279 consensus_9205#5 CCCCAAACCAACTGTTAAACTCCTTCAAACCCCCCCCAAAAAGGAGTTGGGCAAAAGAAA 280 consensus_9205#1 CCCCAAACAAACTGGTAAACCCTTTCAAACCCCCCCCAAAAAGGGGTTGGGCAAAAGAAA 287 consensus_9205#4 CCCCAAACCAACTGGTAAACCCCTTCAATCCCCCCCCAAAAAGGGGTTGGGCCAAAGGAA 269 * ****** ***** ***** * ***** ****** ******** * **** ** * ** consensus_9205#0 TCTCATTTTTTCCCCCCCCGAGCTTGGTTTTTTGAGTCCCCAACAAGGCCCCCAAGAAAC 360 consensus_9205#2 TTTTATTTTTTCCCCCCCCCAGCTTGGTTTTTTGAGTCCCCAACCAGGCCCCCAGGAAAC 334 consensus_9205#3 ACTTTTTTTTTCCCCCCCCGAACTTGTTTTTTTGAGTCCCCAACAAGGCCCCCAGGAAAC 339 consensus_9205#5 ------------------------------------------------------------ consensus_9205#1 TTTTTTTTTTTCCCCCCCCCGGCTTTTTTTTTTTGGTCCCCAAAAAGGCCCCTAAGAAAC 347 consensus_9205#4 ATTTTTTTTTTTCCCCCCCCAGCTTTTTTTTTTTAGTCCCCAAAAAGGCCCCCAAGAAAC 329 consensus_9205#0 CCCAACAGGGGTACCAAAACGGGAAATTTTTGGGGGCTTTTGGAACCCGGGATTTTTTTC 420 consensus_9205#2 CCCAACCGGGGTTCCAAAACGGGAAATTTTTGGGGGCTTTTGGACCCCAGGATTTTTTTC 394 consensus_9205#3 CCCAACCGGGGTCCCAAAACCGGAA----------------------------------- 364 consensus_9205#5 ------------------------------------------------------------ consensus_9205#1 CCCAACCGGGGTCCCAAAACCGGAAAATTTTGGGGGGTTTTGGAACCCAGGATTTTTTTC 407 consensus_9205#4 CCCAACCGGGGTTCCAAAACCGGAA----------------------------------- 354 consensus_9205#0 TTTGGGCGGGTTAACA 436 consensus_9205#2 ---------------- consensus_9205#3 ---------------- consensus_9205#5 ---------------- consensus_9205#1 TTTGGGCGGGTTAAA- 422 consensus_9205#4 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||