cluster # 9220

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Oryza sativa
cluster # 9220 cluster # 9220 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9220#0 length = 757 sequences # 5

consensus_9220#1 length = 621 sequences # 1

consensusID : consensus_9220#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 757
fasta sequence

                              [ACACACCCAGACGCAAAATCGCCCTCCTCGTCGCCTGCCGGCGA-GATGGCTTCGTCGGCGGCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAGTCCCGCAAGATCGAGACCCTCCTCAAGCAGTCGAAGCCGGTGGAGGCCCTCAAGACGGCGCTCGAGGGGACGCCCCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAACTGGATCGTGGTGCACCGCGCGATGATGGCGATCAGGGACGTCGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACATCCTGATGAAGTACCTGTACAGAGG-TTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGTGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGTTTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCATTAGGGCCAATTAGTTGTATGGAAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTCCATTTGGCAGCTAGCTTCTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACTGCTGTACTACTAGTA-TATATATATTGTTGTTTCCAACACGTTATGTGGCATGAACTATGATAATGAAAATGTTGTGGTTTTCAAAAAAAAAAAAAAA]

[+] EMBL AK063232             [ACACACCCAGACGCAAAATCGCCCTCCTCGTCGCCTGCCGGCGA GATGGCTTCGTCGGCGGCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAGTCCCGCAAGATCGAGACCCTCCTCAAGCAGTCGAAGCCGGTGGAGGCCCTCAAGACGGCGCTCGAGGGGACGCCCCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAACTGGATCGTGGTGCACCGCGCGATGATGGCGATCAGGGACGTCGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACATCCTGATGAAGTACCTGTACAGAGG TTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGTGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGTTTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCATTAGGGCCAATTAGTTGTATGGAAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTCCATTTGGCAGCTAGCTTCTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACTGCTGTACTACTAGTA TATATATATTGTTGTTTCCAACACGTTATGTGGCATGAACTATGATAATGAAAATGT                         ]
[+] EMBL OSC0661              [  ACACCCAGACGCAAAATCGCCCTCCTCGTNGCCTGCCGGCGANNATGGCTGCGTCGGCGGCGGCCTACCTCGACGCNGACGAGAACCTCGAGGCCATCATCTNCCGCATCGAGCAGAAGTCCCGCAAGATCGAGACCCTCCTCAAGCAGTCGAAGCCGGTGGAGGCCCTCAAGACGGNGCTCGAGGGGACGNNCCTCAAGACCCNCGACGAGCGATGCAAGTGGGCGAACTGGATCGTGGTGCACCGNGCGATGATNGCGATCAGGGACGTNGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACATCCTGATNAAGTACCTGTACANAGGTTTTTTNAACAGGG                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF331532             [                                                                                                                                                                                                                                                                                                                   TACGACATCCTGATGAAGTACCTGTACAGAGG TTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGTGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACCAGGTTTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCATTAGGGCCAATTAGTTGTATGGAAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTCCATTTGGCAGCTAGCTTCTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACTGCTGTACTACTAGTANTATATATATTGTTGTTTCCAACACGTTATGTGGCATGAACTATGATAATGAAAATGTTGTGGTTTTC               ]
[-] EMBL CF331533             [                                                                                                                                                                                                                                                                                                                    ACGACATCCTGATGAAGTACCTGTACAGAGG TTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATCCCGTAAACACCGTGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACCAGGTTTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCATTAGGGCCAATTAGTTGTATGGAAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTCCATTTGGCAGCTAGCTTCTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACTGCTGTACTACTAGTA TATATATATTGTTGTTTCCAACACGTTATGTGGCATGAACTATGATAATGAAAATGTTGTGGTTTTCAAAAAAAAAAAAAAA]
[+] EMBL AU166304             [                                                                                                                                                                                                                                                                                                                                           tnCAGAGG TTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCCCCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGTGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGTTTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCATTAGGGCCAATTAGTTGTATGGAAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTCCATTTGGCAGCTAGCTTNTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACTGCTGTACTACTAGTA TATATATATTGTTGTTTCCAACACGTTATGTGGCATGAACTATGATAATGAAAATGTTGTGGTTTTCAAGTGAAAAAA    ]




>consensus_9220#0
ACACACCCAGACGCAAAATCGCCCTCCTCGTCGCCTGCCGGCGAGATGGCTTCGTCGGCG
GCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAG
TCCCGCAAGATCGAGACCCTCCTCAAGCAGTCGAAGCCGGTGGAGGCCCTCAAGACGGCG
CTCGAGGGGACGCCCCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAACTGGATCGTG
GTGCACCGCGCGATGATGGCGATCAGGGACGTCGACGGCATGTTCAACTCGCTGGATCCC
GAGTACTACGACATCCTGATGAAGTACCTGTACAGAGGTTTGTCAACAGGGGATCGGCCA
ACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGT
ATATTGCGCTCACTTGCTGATACCGTAAACACCGTGTGAGTTTCATCTCTGTGGAGGGTG
GGCAACACAAGGTTTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCATTAGGGCCA
ATTAGTTGTATGGAAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTCCA
TTTGGCAGCTAGCTTCTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACT
GCTGTACTACTAGTATATATATATTGTTGTTTCCAACACGTTATGTGGCATGAACTATGA
TAATGAAAATGTTGTGGTTTTCAAAAAAAAAAAAAAA

consensusID : consensus_9220#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [AAAATCGCCCTCCTCGTCGCCTGCCGGCGAGATGGCTTCGTCGGCGGCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAGTCCCGCAAGATCGAGACCCTCCTCAAGCAGTAAGCGCCCCCGATTCGTCTTCTCCTTTCTTGATCTTTTTGATTTGCTGGGTTGGAGGGTGACCCATCTGTGCGCGTCGCGGCGCGGCGGCGGCGGCGGCGGCAGGTCGAAGCCGGTGGAGGCCCTCAAGACGGCGCTCGAGGGGACGCCCCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAACTGGATCGTGGTGCACCGCGCGATGATGGCGATCAGGGACGTCGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACATCCTGATGAAGTACCTGTACAGAGGTTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGGGGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGTTTTTTCTCCCAGCTGGCCCATGATATGAAGATATC]

[+] EMBL CA757077             [AAAATCGCCCTCCTCGTCGCCTGCCGGCGAGATGGCTTCGTCGGCGGCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAGTCCCGCAAGATCGAGACCCTCCTCAAGCAGTAAGCGCCCCCGATTCGTCTTCTCCTTTCTTGATCTTTTTGATTTGCTGGGTTGGAGGGTGACCCATCTGTGCGCGTCGCGGCGCGGCGGCGGCGGCGGCGGCAGGTCGAAGCCGGTGGAGGCCCTCAAGACGGCGCTCGAGGGGACGCCCCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAACTGGATCGTGGTGCACCGCGCGATGATGGCGATCAGGGACGTCGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACATCCTGATGAAGTACCTGTACAGAGGTTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGGGGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGTTTTTTCTCCCAGCTGGCCCATGATATGAAGATATC]




>consensus_9220#1
AAAATCGCCCTCCTCGTCGCCTGCCGGCGAGATGGCTTCGTCGGCGGCGGCCTACCTCGA
CGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAGTCCCGCAAGATCGA
GACCCTCCTCAAGCAGTAAGCGCCCCCGATTCGTCTTCTCCTTTCTTGATCTTTTTGATT
TGCTGGGTTGGAGGGTGACCCATCTGTGCGCGTCGCGGCGCGGCGGCGGCGGCGGCGGCA
GGTCGAAGCCGGTGGAGGCCCTCAAGACGGCGCTCGAGGGGACGCCCCTCAAGACCCGCG
ACGAGCGATGCAAGTCGGCGAACTGGATCGTGGTGCACCGCGCGATGATGGCGATCAGGG
ACGTCGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACATCCTGATGAAGTACC
TGTACAGAGGTTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATG
AAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAA
ACACCGGGGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGTTTTTTCTCCCAGCT
GGCCCATGATATGAAGATATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9220#0      ACACACCCAGACGCAAAATCGCCCTCCTCGTCGCCTGCCGGCGAGATGGCTTCGTCGGCG 60
consensus_9220#1      --------------AAAATCGCCCTCCTCGTCGCCTGCCGGCGAGATGGCTTCGTCGGCG 46
                                    **********************************************

consensus_9220#0      GCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAG 120
consensus_9220#1      GCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAG 106
                      ************************************************************

consensus_9220#0      TCCCGCAAGATCGAGACCCTCCTCAAGCAGT----------------------------- 151
consensus_9220#1      TCCCGCAAGATCGAGACCCTCCTCAAGCAGTAAGCGCCCCCGATTCGTCTTCTCCTTTCT 166
                      *******************************                             

consensus_9220#0      ------------------------------------------------------------
consensus_9220#1      TGATCTTTTTGATTTGCTGGGTTGGAGGGTGACCCATCTGTGCGCGTCGCGGCGCGGCGG 226
                                                                                  

consensus_9220#0      -----------------CGAAGCCGGTGGAGGCCCTCAAGACGGCGCTCGAGGGGACGCC 194
consensus_9220#1      CGGCGGCGGCGGCAGGTCGAAGCCGGTGGAGGCCCTCAAGACGGCGCTCGAGGGGACGCC 286
                                       *******************************************

consensus_9220#0      CCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAACTGGATCGTGGTGCACCGCGCGAT 254
consensus_9220#1      CCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAACTGGATCGTGGTGCACCGCGCGAT 346
                      ************************************************************

consensus_9220#0      GATGGCGATCAGGGACGTCGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACAT 314
consensus_9220#1      GATGGCGATCAGGGACGTCGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACAT 406
                      ************************************************************

consensus_9220#0      CCTGATGAAGTACCTGTACAGAGGTTTGTCAACAGGGGATCGGCCAACATGTGACCAGTG 374
consensus_9220#1      CCTGATGAAGTACCTGTACAGAGGTTTGTCAACAGGGGATCGGCCAACATGTGACCAGTG 466
                      ************************************************************

consensus_9220#0      CCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACT 434
consensus_9220#1      CCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACT 526
                      ************************************************************

consensus_9220#0      TGCTGATACCGTAAACACCGTG-TGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGT 493
consensus_9220#1      TGCTGATACCGTAAACACCGGGGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGT 586
                      ******************** * *************************************

consensus_9220#0      TTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCATTAGGGCCAATTAGTTGTATGG 553
consensus_9220#1      TTTTTCTCCCAGCTGGCCCATGATATGAAGATATC------------------------- 621
                      *************** ************* *****                         

consensus_9220#0      AAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTCCATTTGGCAGCTAGC 613
consensus_9220#1      ------------------------------------------------------------
                                                                                  

consensus_9220#0      TTCTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACTGCTGTACTACTAG 673
consensus_9220#1      ------------------------------------------------------------
                                                                                  

consensus_9220#0      TATATATATATTGTTGTTTCCAACACGTTATGTGGCATGAACTATGATAATGAAAATGTT 733
consensus_9220#1      ------------------------------------------------------------
                                                                                  

consensus_9220#0      GTGGTTTTCAAAAAAAAAAAAAAA 757
consensus_9220#1      ------------------------