cluster # 9222

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Oryza sativa
cluster # 9222 cluster # 9222 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9222#0 length = 741 sequences # 5

consensus_9222#1 length = 397 sequences # 1

consensusID : consensus_9222#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 741
fasta sequence

                              [TGGACCTGACTGGACTGAAGGAGTAGAAAATAGCCTGCGTGGTCCAGCTTCCCCTCCCCTCGGGTTTCCGGCGTGCTAGGGCTCGGCCGCGGTGGCGAAGGCGAAAGGGAGCTCGGGGATGGAGGCGGCCGCCGACGAGGAGCAGGAGGGGATCTCCGCCCAGTCGCCGGCCCAGGCGCCGCCCTCCTCCGCCTCGTCCCTTCCCAAGGAGCAATCGCAGGTGGAGCTGGAGCTGCGGGTGCTTCAGGCTCTCGAGTTCTACCCTCCGTCCAAACTGAAAGGCATTCATCGTCACTTTGTTATCTATGGTCTAATGGAATACTTGAGAAAAAGTCTTGATAGACAATTCTCTGCTGATGAAGTTTTACAACTACTGGACCGATTCTTCAACCTAGAAATGCTGAAGCCAGAGGACGACGAGAAGGATAACTTCACTCAAGGAGAAGAATTTTCCTTACCTGAAAGTTTCTTTAACAAGGACGAATGATAGCCCAGTAACCCTGCAGCGCAACATCCTTCGTAATTTAACAGAGGGGACTACGAATCTTATGATGTTTCCAATGATTCTCTTGCGTAGACATCTCTTGACGGCACACTTCGAACTGAAAGAACACATTTTGCTCGGCCGTGTCTTTGTGTTAGTGCTTACTGTGACTTGTACAGCTTCTGTTGACTTAGGATATGCAGTCAATGGTACGGGATCTCAGTACCCGTTAACTATCAGTGCCGTTTCTTCGCTCT]

[+] EMBL CF332064             [TGGACCTGACTGGACTGAAGGAGTAGAAAATAGCCTGCGTGGTCCAGCTTCCCCTCCCCTCGGGTTTCCGGCGTGCTAGGGCTCCGCCGCGGTGGCGAACGCCAAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF331928             [                                     CGTGGTCCAGCTTCCCCTCCCCTCGGGTTTCCGGCGTGCTAGGGCTCGGCCGCGGTGGCGAAGGCGAAAGGGAGCTCGGGGATGGAGGCGGCCGCCGACGAGGAGCAGGAGGGGATCTCCGCCCAGTCGCCGGCCCAGGCGCCGCCCTCCTCCGCCTCGTCCCTTCCCAAGGAGCAATCGCAGGTGGAGCTGGAGCTGCGGGTGCTTCAGGCTCTCGAGTTCTACCCTCCGTCCAAACTGAAAGGCATTCATCGTCACTTTGTTATCTATGGTCTAATGGAATACTTGAGAAAAAGTCTTGATAGACAATTCTCTGCTGATGAAGTTTTACAACTACTGGACCGATTCTTCAACCTAGAAATGCTGAAGCCAGAGGACGACGAGAAGGATAACTTCACTCAAGGAGAAGAATTTTCCTTACCTGAAAGTTTCTTTAACAAGGACGAATGATAGCCCAGTAACCCTGCAGCGCAACATCCTTCGTAATTTAACAGAGGGGACTACGAATCTTATGATGTTTCCAATGATTCTCTTGCGTAGACATCTCTTGACGGCACACTTCGAACTGAA                                                                                                                                      ]
[+] EMBL AK062441             [                                        GGTCCAGCTTCCCCTCCCCTCGGGTTTCCGGCGTGCTAGGGCTCGGCCGCGGTGGCGAAGGCGAAAGGGAGCTCGGGGATGGAGGCGGCCGCCGACGAGGAGCAGGAGGGGATCTCCGCCCAGTCGCCGGCCCAGGCGCCGCCCTCCTCCGCCTCGTCCCTTCCCAAGGAGCAATCGCAGGTGGAGCTGGAGCTGCGGGTGCTTCAGGCTCTCGAGTTCTACCCTCCGTCCAAACTGAAAGGCATTCATCGTCACTTTGTTATCTATGGTCTAATGGAATACTTGAGAAAAAGTCTTGATAGACAATTCTCTGCTGATGAAGTTTTACAACTACTGGACCGATTCTTCAACCTAGAAATGCTGAAGCCAGAGGACGACGAGAAGGATAACTTCACTCAAGGAGAAGAATTTTCCTTACCTGAAAGTTTCTTTAACAAGGACGAATGATAGCCCAGTAACCCTGCAGCGCAACATCCTTCGTAATTTAACAGAGGGGACTACGAATCTTATGATGTTTCCAATGATTCTCTTGCGTAGACATCTCTTGACGGCACACTTCGAACTGAAAGAACACATTTTGCTCGGCCGTGTCTTTGTGTTAGTGCTTACTGTGACTTGTACAGCTTCTGTTGACTTAGGATATGCAGTCAATGGTACGGGATCTCAGTACCC                             ]
[+] EMBL AU077631             [                                                                                                                                             GCAGGAGGGGATCTCCGCCCAGTCGCCGGCCCAGGCGCCGCCCTCCTCCGCCTCGTCCCTTCCCAAGGAGCAATCGCAGGTGGAGCTGGAGCTGCGGGTGCTTCAGGCTCTCGAGTTCTACCCTCCGTCCAAACTGAAAGGCATTCATCGTCACTTTGTTATCTATGGTCTAATGGAATACTTGAGAAAAAGTCTTGATAGACAATTCTCTGCTGATGAAGTTTTACAACTACTGGACCGATTCTTCAACCTAGAAATGCTGAAGCCAGAGGACGACGAGAAGGATAACTTCACTCAAGGAGAAGAATTTTCCTTACCTGAAAGTTTCTTTAACAAGGACGAATGATAGCCCAGTAACCCTGCAGCGCAACATCCTTCGTAATTTAACAGAGGGGACTACGAATCTTATGATGTTTCCAATGATTCTCTTGCGTAGACATCTCTTGACGGCACACTTCGAACTGAAAGAACACATTTTGCTCGGCCGTGTCTTTGTGTTAGTGCTTACTGTGACTTGTACAGCTTCTGTTGACTTAGGATATGCAGTCAATGGTACGGGATCTCAGTACCCGTTAACTATCAGTGCCGTTTCTTCGCTCT]
[+] EMBL OSC26891             [                                                                                                                                                                                                                                                                                                                                    GAGAAAAAGTCTTGATAGACAATTCTCTGCTGATGAAGTTTTACAACTACTGGACCGATTCTTCAACCTAGAAATGCTGAAGCCAGAGGACGACGAGAAGGATAACTTCACTCAAGGAGAAGAATTTTCCTTACCTGAAAGTTTCTTTAACAAGGACGAATGATAGCCCAGTAACCCTGCAGCGCAACATCCTTCGTAATTTAACAGAGGGGACTACGAATCTTATGATGTTTCCAATGATTCTCTTGCGTAGACATCTCTTGACGGCACACTTCGAACTGAAAGAACACATTTTGCTCGGCCGTGTCTTTGTGTTAGTGCTTACTGTGACTTGTNCAGCTTCTGTTGNCTTAGGGTATGCAGT AATG                                                ]




>consensus_9222#0
TGGACCTGACTGGACTGAAGGAGTAGAAAATAGCCTGCGTGGTCCAGCTTCCCCTCCCCT
CGGGTTTCCGGCGTGCTAGGGCTCGGCCGCGGTGGCGAAGGCGAAAGGGAGCTCGGGGAT
GGAGGCGGCCGCCGACGAGGAGCAGGAGGGGATCTCCGCCCAGTCGCCGGCCCAGGCGCC
GCCCTCCTCCGCCTCGTCCCTTCCCAAGGAGCAATCGCAGGTGGAGCTGGAGCTGCGGGT
GCTTCAGGCTCTCGAGTTCTACCCTCCGTCCAAACTGAAAGGCATTCATCGTCACTTTGT
TATCTATGGTCTAATGGAATACTTGAGAAAAAGTCTTGATAGACAATTCTCTGCTGATGA
AGTTTTACAACTACTGGACCGATTCTTCAACCTAGAAATGCTGAAGCCAGAGGACGACGA
GAAGGATAACTTCACTCAAGGAGAAGAATTTTCCTTACCTGAAAGTTTCTTTAACAAGGA
CGAATGATAGCCCAGTAACCCTGCAGCGCAACATCCTTCGTAATTTAACAGAGGGGACTA
CGAATCTTATGATGTTTCCAATGATTCTCTTGCGTAGACATCTCTTGACGGCACACTTCG
AACTGAAAGAACACATTTTGCTCGGCCGTGTCTTTGTGTTAGTGCTTACTGTGACTTGTA
CAGCTTCTGTTGACTTAGGATATGCAGTCAATGGTACGGGATCTCAGTACCCGTTAACTA
TCAGTGCCGTTTCTTCGCTCT

consensusID : consensus_9222#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [CTATTGGGCCGATTTTTCACCCTAAAAATGTTGAAGCCAAAGGCCGCCGAAAAGGATAACTTCCCTCAAGGAGAAAAATTTTCCTTCCCTGAAAGTTTTTTTAACAAGGACGAATGATAGCCCAGTAACCCTGCAGGGCAACATCCTTTGTAATTTAACAAAGGGGGCTACGAATTTTATGATGTTTCCAATGATTTTTTTGGGTAGACATTTTTTGGCGGCACATTTTGAATTGAAAAAAAAAATTTTGTTCGGCCGGGTTTTTGTGTTAGGGCTTACTGTGACTTGTACAGCTTTTGTTGACTTAGGAAAACCAGTCAATGGTACGGGATTTCAGTACCCGTTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF331929             [CTATTGGGCCGATTTTTCACCCTAAAAATGTTGAAGCCAAAGGCCGCCGAAAAGGATAACTTCCCTCAAGGAGAAAAATTTTCCTTCCCTGAAAGTTTTTTTAACAAGGACGAATGATAGCCCAGTAACCCTGCAGGGCAACATCCTTTGTAATTTAACAAAGGGGGCTACGAATTTTATGATGTTTCCAATGATTTTTTTGGGTAGACATTTTTTGGCGGCACATTTTGAATTGAAAAAAAAAATTTTGTTCGGCCGGGTTTTTGTGTTAGGGCTTACTGTGACTTGTACAGCTTTTGTTGACTTAGGAAAACCAGTCAATGGTACGGGATTTCAGTACCCGTTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9222#1
CTATTGGGCCGATTTTTCACCCTAAAAATGTTGAAGCCAAAGGCCGCCGAAAAGGATAAC
TTCCCTCAAGGAGAAAAATTTTCCTTCCCTGAAAGTTTTTTTAACAAGGACGAATGATAG
CCCAGTAACCCTGCAGGGCAACATCCTTTGTAATTTAACAAAGGGGGCTACGAATTTTAT
GATGTTTCCAATGATTTTTTTGGGTAGACATTTTTTGGCGGCACATTTTGAATTGAAAAA
AAAAATTTTGTTCGGCCGGGTTTTTGTGTTAGGGCTTACTGTGACTTGTACAGCTTTTGT
TGACTTAGGAAAACCAGTCAATGGTACGGGATTTCAGTACCCGTTAATTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9222#0      TGGACCTGACTGGACTGAAGGAGTAGAAAATAGCCTGCGTGGTCCAGCTTCCCCTCCCCT 60
consensus_9222#1      ------------------------------------------------------------
                                                                                  

consensus_9222#0      CGGGTTTCCGGCGTGCTAGGGCTCGGCCGCGGTGGCGAAGGCGAAAGGGAGCTCGGGGAT 120
consensus_9222#1      ------------------------------------------------------------
                                                                                  

consensus_9222#0      GGAGGCGGCCGCCGACGAGGAGCAGGAGGGGATCTCCGCCCAGTCGCCGGCCCAGGCGCC 180
consensus_9222#1      ------------------------------------------------------------
                                                                                  

consensus_9222#0      GCCCTCCTCCGCCTCGTCCCTTCCCAAGGAGCAATCGCAGGTGGAGCTGGAGCTGCGGGT 240
consensus_9222#1      ------------------------------------------------------------
                                                                                  

consensus_9222#0      GCTTCAGGCTCTCGAGTTCTACCCTCCGTCCAAACTGAAAGGCATTCATCGTCACTTTGT 300
consensus_9222#1      ------------------------------------------------------------
                                                                                  

consensus_9222#0      TATCTATGGTCTAATGGAATACTTGAGAAAAAGTCTTGATAGACAATTCTCTGCTGATGA 360
consensus_9222#1      ------------------------------------------------------------
                                                                                  

consensus_9222#0      AGTTTTACAACTACTGGACCGATTCTTCAACCTAGAAATGCTGAAGCCAGAGGACGACGA 420
consensus_9222#1      ----------CTATTGGGCCGATTTTTCACCCTAAAAATGTTGAAGCCAAAGGCCGCCGA 50
                                *** *** ****** **** **** ***** ******** *** ** ***

consensus_9222#0      GAAGGATAACTTCACTCAAGGAGAAGAATTTTCCTTACCTGAAAGTTTCTTTAACAAGGA 480
consensus_9222#1      AAAGGATAACTTCCCTCAAGGAGAAAAATTTTCCTTCCCTGAAAGTTTTTTTAACAAGGA 110
                       ************ *********** ********** *********** ***********

consensus_9222#0      CGAATGATAGCCCAGTAACCCTGCAGCGCAACATCCTTCGTAATTTAACAGAGGGGACTA 540
consensus_9222#1      CGAATGATAGCCCAGTAACCCTGCAGGGCAACATCCTTTGTAATTTAACAAAGGGGGCTA 170
                      ************************** *********** *********** ***** ***

consensus_9222#0      CGAATCTTATGATGTTTCCAATGATTCTCTTGCGTAGACATCTCTTGACGGCACACTTCG 600
consensus_9222#1      CGAATTTTATGATGTTTCCAATGATTTTTTTGGGTAGACATTTTTTGGCGGCACATTTTG 230
                      ***** ******************** * *** ******** * *** ******* ** *

consensus_9222#0      AACTGAAAGAACACATTTTGCTCGGCCGTGTCTTTGTGTTAGTGCTTACTGTGACTTGTA 660
consensus_9222#1      AATTGAAAAAAAAAATTTTGTTCGGCCGGGTTTTTGTGTTAGGGCTTACTGTGACTTGTA 290
                      ** ***** ** * ****** ******* ** ********** *****************

consensus_9222#0      CAGCTTCTGTTGACTTAGGATATGCAGTCAATGGTACGGGATCTCAGTACCCGTTAACTA 720
consensus_9222#1      CAGCTTTTGTTGACTTAGGAAAACCAGTCAATGGTACGGGATTTCAGTACCCGTTAATTA 350
                      ****** ************* *  ****************** ************** **

consensus_9222#0      TCAGTGCCGTTTCTTCGCTCT-------------------------- 741
consensus_9222#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 397
                        *