These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 842 fasta sequence [TCCTTTTTTTTTTTTTGATTATTCACACAATATATTATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGT--------AAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGGAGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCTTCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCAGAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTCTGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCATCTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGAATATGCTCTTAGTTGGCTCGCCCTCCGGTGGTGGCTCATAGCCTTGCAGGGCCATGGCGTCGAACTCCTTTTTTCCACGTTCACGAAGAAACTGCA] [+] EMBL CB635754 [TCCTTTTTTTTTTTTTGATTATTCACACAATATATTATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGT AAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGGAGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCTTCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCAAAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTCTGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCATCTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGAATATGCTCTTAGTTGGCTCGCCCTCCGGTGGTGGCTCATAGCCTTGCAGGGCCATGGCG ] [+] EMBL CB633324 [ tcTTTTTATTGATTATTCACACAATATATTATATATGAAACCCTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAAAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGTA AAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGGAGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCTTCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCAGAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTCTGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCATCTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGA ] [+] EMBL CB631460 [ GATTATTCACACAATATATTATATATGAAACACTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGTAAAAAAAAAAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGGAGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCTTCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCAGAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTCTGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCATCTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGAATATGCTCTTAGTTGGCTCGCCCTCCGGTGGTGGCTCATAGCCTTG ] [+] EMBL CB629772 [ CACAATATATTATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGT AAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGGAGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCTTCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCAGAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTCTGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCATCTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGAATATGCTCTTAGTTGGCTCGCCCTCCGGTGGTGGCTCATAGCCTTGCAGGGCCATGGCGTCGAACTCCTTTTTTCCACGTTCACGAAGAAACTGCA] [+] EMBL CB633211 [ CACAATATATTATATATGCCACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGT AAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGGAGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCTTCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCAGAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTCTGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCATCTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGAATATGCTCTTAGTTGGCTCGCCCTCCGGTGGTGGCTCATAGCCTTGCAGGGCCATGGCGTCG ] consensusID : consensus_9223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [TACCAATGATACCAGTATCCTGATATTGACCCTTTTCTTTGATTATTCACACAATATATTATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGTAAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGACAATATTTTCAGCACAAAACAAACATATTATCAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATAAGGAACG] [-] EMBL CB628268 [TACCAATGATACCAGTATCCTGATATTGACCCTTTTCTTTGATTATTCACACAATATATTATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGTAAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGACAATATTTTCAGCACAAAACAAACATATTATCAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATAAGGAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9223#0 ------------------------TCCTTTTTTTTTTTTTGATTATTCACACAATATATT 36 consensus_9223#1 TACCAATGATACCAGTATCCTGATATTGACCCTTTTCTTTGATTATTCACACAATATATT 60 **** *********************** consensus_9223#0 ATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATAC 96 consensus_9223#1 ATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATAC 120 ************************************************************ consensus_9223#0 CACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACA 156 consensus_9223#1 CACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACA 180 ************************************************************ consensus_9223#0 TCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTAC 216 consensus_9223#1 TCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTAC 240 ************************************************************ consensus_9223#0 TCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATT 276 consensus_9223#1 TCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATT 300 ************************************************************ consensus_9223#0 TCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGTAAAAAAAAATAGCAATCCAAAAC 336 consensus_9223#1 TCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGTAAAAAAAAATAGCAATCCAAAAC 360 ************************************************************ consensus_9223#0 ACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAAT 396 consensus_9223#1 ACCAAAATTTTTGACAATATTTTCAGCACAAAACAAACATATTATCAAAATTGGTCAAAT 420 ************** ***** ** ** ***** * ************** consensus_9223#0 TAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGG 456 consensus_9223#1 TAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATAAGGAACG- 479 **************************************************** * **** consensus_9223#0 AGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCT 516 consensus_9223#1 ------------------------------------------------------------ consensus_9223#0 TCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCA 576 consensus_9223#1 ------------------------------------------------------------ consensus_9223#0 GAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTC 636 consensus_9223#1 ------------------------------------------------------------ consensus_9223#0 TGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCAT 696 consensus_9223#1 ------------------------------------------------------------ consensus_9223#0 CTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGAATATGCTCTT 756 consensus_9223#1 ------------------------------------------------------------ consensus_9223#0 AGTTGGCTCGCCCTCCGGTGGTGGCTCATAGCCTTGCAGGGCCATGGCGTCGAACTCCTT 816 consensus_9223#1 ------------------------------------------------------------ consensus_9223#0 TTTTCCACGTTCACGAAGAAACTGCA 842 consensus_9223#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||